Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0808 ATGATGAATACGAGCAATCAAACCCAGTCGTGCGTCTTGTCTAAGATAGCAACAGGAAATGGGCATGGTGAAGATTCTTCATATTTCGATGGCTGGAAAGCATATGACAGCGATCCATTCCATCCCACCATGAATCCTCACGGTGTTATCCAGATGGGTCTCGCTGAAAACCAGCTAAGCTTTGACTTGGTTCAAGACTGGATAAAGAAAAACCCAGAGGCTTCTATTTGCGACGGCGGACTTAAAGAGTTCAAGGACATAGCAATCTTTCAGGATTATCATGGCTTGCCCGATTTCAGAAACGCTGTCGCAAAGTTTATGGGAAAGGTGAGGGGAGATAGAGTGACATTCGACCCTGATCGTATCGTCATGAGCGGCGGAGCAACGGGAGCTCATGAAACGATAGCGTTCTGTCTGGCTGATCCTGGCGAAGCTTTTCTTGTTCCTATTCCTTATTATCCTGGGTTTGACCGAGACTTGAGATGGAGAACAGGAGTCCAACTCATCCCTGTAATCTGCGAGAGCTCGAATAATTTCCAGGTAACGACAAAAGCGTTGGAAGCTGCTTACAATGAAGCCCAACAGGCCCATATAAAAGTCAAGGGCCTACTCATAACCAACCCGTCAAACCCATTAGGCACCATCTTAGACAAACAAACACTCAAGAACATAGTAAACTTCATCAACCAAAAGAACATCCACTTGATCTGCGACGAAATATATTCCGCCACTGTTTTCACCCAGCCGAACTTCATTAGCATCTCCGAAATAGTACAAGACCCAACCCTCCTCCCTCCTTGTAACACCAACCTTATCCACGTTGTCTATAGTCTCTCCAAAGACATGGGATTCCCAGGTTTCAGGGTGGGAATCGTCTATTCCTACAACGACCGAGTCGTAAACTGTGCTCGTAAAATGTCGAGCTTCAGTCTCATCTCGTCTCAAACTCAATACATGATCGCTTCGATGCTATCGGACGAGGAATTCACAGACCAGTTTATTCTAGAAAGCTCTAGAAGATTGGCGGCAAGGCACGACATTTTCTCCAAGGGTCTTGGAGAGGTTTCTATTGGTCATTTGAAGGGCAATGCGGGTTTGTTTCTGTGGATGGATTTACGGCATCTTCTTAAGGCGAAAACGTTCAAGGCCGAGATGGAGTTATGGCGGGTTATTATTAAAGAAGTGAAGTTGAACGTTTCGCCGGGCGGATCTTTCCATTGCTTGGAGCCGGGTTGGTTCAGGGTTTGCTTTGCTAATATGGATGATGGGACCATGGAAGTTGCTTTGAGGAGGATTAGAGCGTTTGTGGGTGAGAAGTATAGTAAGGAGAGTGAGACGGCATTAATGAGTACTAGTACTAGTAGTGTAGTCAAGAAGAAGAAGTGCTGGCAGAGTAATCTCGAGTTGAGGTTGTCGTCTAGGAGGTTGGAAGATAAGATCGGGGTGTCGTTTATGATGTCTCCTCAATCTCCTCTGCCTCAGTCTCCTCTTGTTCGAGCAAGGACTTAA 1509 45.99 MMNTSNQTQSCVLSKIATGNGHGEDSSYFDGWKAYDSDPFHPTMNPHGVIQMGLAENQLSFDLVQDWIKKNPEASICDGGLKEFKDIAIFQDYHGLPDFRNAVAKFMGKVRGDRVTFDPDRIVMSGGATGAHETIAFCLADPGEAFLVPIPYYPGFDRDLRWRTGVQLIPVICESSNNFQVTTKALEAAYNEAQQAHIKVKGLLITNPSNPLGTILDKQTLKNIVNFINQKNIHLICDEIYSATVFTQPNFISISEIVQDPTLLPPCNTNLIHVVYSLSKDMGFPGFRVGIVYSYNDRVVNCARKMSSFSLISSQTQYMIASMLSDEEFTDQFILESSRRLAARHDIFSKGLGEVSIGHLKGNAGLFLWMDLRHLLKAKTFKAEMELWRVIIKEVKLNVSPGGSFHCLEPGWFRVCFANMDDGTMEVALRRIRAFVGEKYSKESETALMSTSTSSVVKKKKCWQSNLELRLSSRRLEDKIGVSFMMSPQSPLPQSPLVRART 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3883100 3885543 - Conep09aG0082600.1 Cone9ag0808 444971

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0808 502 Gene3D - 72 326 IPR015421 -
Cone9ag0808 502 Pfam Aminotransferase class I and II 50 432 IPR004839 GO:0009058(InterPro)|GO:0030170(InterPro)
Cone9ag0808 502 CDD AAT_like 90 434 - -
Cone9ag0808 502 SUPERFAMILY PLP-dependent transferases 22 437 IPR015424 -
Cone9ag0808 502 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 84 100 - -
Cone9ag0808 502 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 271 295 - -
Cone9ag0808 502 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 121 141 - -
Cone9ag0808 502 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 143 164 - -
Cone9ag0808 502 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 197 221 - -
Cone9ag0808 502 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 233 256 - -
Cone9ag0808 502 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 52 78 - -
Cone9ag0808 502 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 303 326 - -
Cone9ag0808 502 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 14 442 IPR050478 GO:0006520(PANTHER)|GO:0008483(PANTHER)
Cone9ag0808 502 Gene3D Aspartate Aminotransferase, domain 1 38 431 IPR015422 -
Cone9ag0808 502 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 277 290 IPR004838 GO:0003824(InterPro)|GO:0009058(InterPro)|GO:0030170(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0808 K20772 - - csv:101212728 718.383
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0781 Cone-Chr4:4659200 Cone9ag0808 Cone-Chr9:3883100 2.27E-181 dispersed
Cone4ag1638 Cone-Chr4:12377793 Cone9ag0808 Cone-Chr9:3883100 1.68E-163 dispersed
Cone7ag1313 Cone-Chr7:9627095 Cone9ag0808 Cone-Chr9:3883100 5.85E-27 dispersed
Cone8ag0179 Cone-Chr8:926432 Cone9ag0808 Cone-Chr9:3883100 3.94E-172 dispersed
Cone9ag0808 Cone-Chr9:3883100 Cone9ag1404 Cone-Chr9:10435022 4.16E-174 dispersed
Cone14ag0386 Cone-Chr14:1798225 Cone9ag0808 Cone-Chr9:3883100 8.82E-241 wgd
Cone15ag0422 Cone-Chr15:1986261 Cone9ag0808 Cone-Chr9:3883100 1.43E-228 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g40 Blo02g01120 Blo03g00222 Bda06g00119 . . Bpe07g00098 . . . Cmo16g00632 . . . . . Cpe14g00493 . . . . . . . . Cla07g00752 Cam07g0805 Cec07g0867 Cco07g0843 Clacu07g0787 Cmu07g0794 Cre07g1146 . . . Cone9ag0808 . . . Cme07g01616 . . . . . . . Bma12g00069 . . . . Cma16g00582 . . . . . . . . . . . . . . . . . . . Csa04g00609 Chy07g01202 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001626 1 2 3 2 2 2 4 2 2 2 2 2 4 2 2 4 2 3 3 2 2 2 2 2 2 2 2 5 2 2 71