Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0811 ATGGAAGGCTCCTCATGGGATTTGCAAGCTATAGTAAGAGGATCATACACCAATGAAACTGATCATGATCCAATAATTACTGATGATATAATCAAAATGGAATCACCGCAGTTACCGGCGTCCACCTTTGATCAATACCCTAATTTGGTCGGTACTGTTCTTGATCATGATGAAGATGTACCTTTTCCAGATTTCTTTGAAACCACCACAACAAGTTTAGATGAATTGGAAGGGCTTTACAAGCCTTTCTACCCGGTCTTTTCCTCTCAGACCGTCCGTTTTACAGACCCCTCAGCCTCGATTTCTGTTCCAAGAGAATTAGTCAAAGAACTAGATGATCATCCTCAAAAGCAGGCACAGCACCACAAAAACCATCAAACCTCATCATCTGTTAAGACTAAAACAAGCAAGAAGAATCAACAAAATAGGGTGATAAAACAGGTAAAAGCAGATGGGCTGAGCTCAGACATGTGGGCATGGAGGAAATATGGGCAGAAACCAATAAAGGGATCGCCATATCCGAGAAGCTATTATAGATGTAGTAGCTCAAAGGGATGTTCAGCAAGAAAGCAAGTAGAACAAAGCCCTTCCGATCCAGACATTTTCATCATAACCTACATGTCGGAACACGACCATGCCCTCCCGACTCGCCTGAACTCACTTTCCGGAATCAGCAAGAGCAAGTACTACTCACACAAACGGAAAATCACTACTTGTGATCCCGATCAGGCCGTAAATAGTAATATTGGTTCGCCGGATCCCGATACTTATAAGGTTATGTCTCCTACTACATCTCAATCTGTAGTAACTTATGAAGATCATGATCTTGGGCATGTTAACAACATTTGCGTAAGAAAGGAAGAAGAATATCATGATCAGGCAGTGTTCTTGGAACAAAGTGAAGGCAATTATAATTACGACCAATGTGTGATGGTTAGTTCCGATAATCGTGATCATGATCAGATCATTTCAAGTGACGATTTGTTTCCAATCCTGGAAGAGATACTTTTTGGATAA 1017 41.2 MEGSSWDLQAIVRGSYTNETDHDPIITDDIIKMESPQLPASTFDQYPNLVGTVLDHDEDVPFPDFFETTTTSLDELEGLYKPFYPVFSSQTVRFTDPSASISVPRELVKELDDHPQKQAQHHKNHQTSSSVKTKTSKKNQQNRVIKQVKADGLSSDMWAWRKYGQKPIKGSPYPRSYYRCSSSKGCSARKQVEQSPSDPDIFIITYMSEHDHALPTRLNSLSGISKSKYYSHKRKITTCDPDQAVNSNIGSPDPDTYKVMSPTTSQSVVTYEDHDLGHVNNICVRKEEEYHDQAVFLEQSEGNYNYDQCVMVSSDNRDHDQIISSDDLFPILEEILFG 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3902804 3904063 + Conep09aG0082900.1 Cone9ag0811 444974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0811 338 MobiDBLite consensus disorder prediction 112 142 - -
Cone9ag0811 338 Pfam WRKY DNA -binding domain 156 212 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone9ag0811 338 MobiDBLite consensus disorder prediction 122 142 - -
Cone9ag0811 338 FunFam WRKY transcription factor 22 137 208 - -
Cone9ag0811 338 Gene3D WRKY domain 137 208 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone9ag0811 338 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 112 324 IPR044810 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cone9ag0811 338 ProSiteProfiles WRKY domain profile. 149 215 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone9ag0811 338 SUPERFAMILY WRKY DNA-binding domain 152 215 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone9ag0811 338 SMART WRKY_cls 154 214 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone9ag0811 Cone-Chr9:3902804 Cone9ag1134 Cone-Chr9:7884428 1.44E-31 dispersed
Cone11ag0447 Cone-Chr11:2253478 Cone9ag0811 Cone-Chr9:3902804 3.39E-38 wgd
Cone14ag0387 Cone-Chr14:1810039 Cone9ag0811 Cone-Chr9:3902804 2.97E-41 wgd
Cone14ag0050 Cone-Chr14:312009 Cone9ag0811 Cone-Chr9:3902804 2.88E-38 wgd
Cone15ag0424 Cone-Chr15:2001244 Cone9ag0811 Cone-Chr9:3902804 1.21E-37 wgd
Cone15ag0055 Cone-Chr15:335860 Cone9ag0811 Cone-Chr9:3902804 4.95E-39 wgd
Cone18ag1061 Cone-Chr18:7777622 Cone9ag0811 Cone-Chr9:3902804 4.63E-39 wgd
Cone6ag0812 Cone-Chr6:4127490 Cone9ag0811 Cone-Chr9:3902804 3.99E-193 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46835 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0811 K13426 - mdm:103439197 199.134