Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0812 ATGGAAAGAGAGATTAATGATATCCCACTCCCATCAACTTCATTCATGGACCAACTCATGACACAGGAAGTAGTAGCTCATGATCATCATCTTCTTGCTTCGGACAACAGTAATAGTAACAATATCGATTGGGTGAGCCTCCTTTCTTCTTCCTTCAACTACGGTAATTATCAGCAATTGCCATCGTTGATTGCAGGAAGCTGTAGCAGTGATCAATATCAGTCAATAATGGCTAGAAATGGAGGAGATGATCATGATCATCAAGCTGTATCAAATAATGGGAATGATGATCATAGAAACAGGTACATAAGGGGCAGGAAAGTTACTCCTCCAAGGGTGGCTTTTCACACGAGGAGCGTTGATGACATTCTGGACGATGGATACAGATGGAGAAAATATGGGCAGAAGGCTGTAAAGAATAGTAGACATCCAAGGAGTTATTATCGCTGTACCCATCATACATGCAACGTAAAGAAACAGATCCAGCGGCTGGCAAATGATTCAAGCATAGTGGTGACAACCTACGAAGGAATACACAACCACCTTTGTGAAAAATTGATGGAGACCTTAAGCCCACTGCTAAAGCAATTGCAATTCCTCTCTGGGATTTAG 612 41.83 MEREINDIPLPSTSFMDQLMTQEVVAHDHHLLASDNSNSNNIDWVSLLSSSFNYGNYQQLPSLIAGSCSSDQYQSIMARNGGDDHDHQAVSNNGNDDHRNRYIRGRKVTPPRVAFHTRSVDDILDDGYRWRKYGQKAVKNSRHPRSYYRCTHHTCNVKKQIQRLANDSSIVVTTYEGIHNHLCEKLMETLSPLLKQLQFLSGI 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3904808 3905551 + Conep09aG0083000.1 Cone9ag0812 444975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0812 203 Gene3D WRKY domain 109 183 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone9ag0812 203 SUPERFAMILY WRKY DNA-binding domain 118 181 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone9ag0812 203 MobiDBLite consensus disorder prediction 80 102 - -
Cone9ag0812 203 ProSiteProfiles WRKY domain profile. 119 184 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone9ag0812 203 SMART WRKY_cls 124 183 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone9ag0812 203 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 85 182 IPR044810 GO:0003700(InterPro)
Cone9ag0812 203 FunFam WRKY transcription factor 57 110 184 - -
Cone9ag0812 203 Pfam WRKY DNA -binding domain 125 181 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone9ag0812 Cone-Chr9:3904808 Cone9ag1265 Cone-Chr9:9395529 4.96E-30 dispersed
Cone14ag0389 Cone-Chr14:1820231 Cone9ag0812 Cone-Chr9:3904808 9.08E-51 wgd
Cone15ag0427 Cone-Chr15:2010547 Cone9ag0812 Cone-Chr9:3904808 1.10E-49 wgd
Cone6ag0813 Cone-Chr6:4129505 Cone9ag0812 Cone-Chr9:3904808 4.19E-105 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46836 PF01344 Kelch_1 8.00E-11 CL0186 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0812 - - - 0.0