Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0813 ATGAGAAAACAGAACCTCCAAGTAACGATAAGAAGGAGTGGACACTGCAGACGCAGAAGGAAATTACCTGCTTGGGTGGGCAGTCCATCCATGATTCGAACACTGCCTTCAAAACCAAGATATGTAATCATGGGCTGTTGCTTTATTGACAGTGGCCATTTATCTGACCATCATCCTCCTGTCGAACCTGCGGAAGGGAGCGAGGTATTAGCTGATAGAGAGTCTCAACACAGAAAGCAACCCAAGTGCACTGTAGTTATTGTAGATACGTATTCTCTTACCATTGTTCAAACTATTGTTCATGGGATCTTATCTGTTGGGTCTCTGAAGTTCATGGAAGTGGTTTCGTCAATTGAAGACGAGGAGAAGCATTCTGTCATCATGGCTGATTTTTTTGGTAGGCTGCAACTGGTTTCATTACCGAAGGAACCCCACCAAGATGGGGACAGTGGGATGGGATTGCATAAAGCTCAATTTGAAACGGCTGTGTGGGGAGATATATTGAACGAGAGGGGACAGGTGTTATCAATAGATACCCAGGGGAACTTGATTGCTTTCCTGTTGCACGATCACTGCATATTCAAACTTTTGTCCAGTGGTTTAACAATTGGAGAGATATCTTTTGTAGATAGTTTCCCTTGTCTCGAGCAAGATTCCAGTCAAAGACATAGGATTGGGGGGATGTTTCTTGATAAAGGAGATACTGAAAATACAGTGAATACCAAGGCGTCTCATGAACCCCTTGAAGTGAAATTTATGATTTGGAATGCTTCAGGTTTTGCCATTGTGTATATTATTTCATATTTGAATGATGCTTTTAAATGTGAACCACATCTGGAGATTCCTACCGCTTGTTATTCTCCTGATATAAGGCTTTCAATTTCTTTCAGCCAGTTGAACCACTGTCTTCTCCGCGTTGAATCCATTAGCTCCCAAGTTGAAGAACCTTTACATTGGACACCTAATTTTAAAATCTGGTCACTGTGTAAGAAATATGATGACCACCAGAAGTTCTGTCAACAAGGTAGATTGCTTGGTGAGGGAAGTTCTTTATTTGATTGGATTCCAAAGTCCTCTTTACTTAATGAGAGACAGGGCCAGCATGGGGAAAGTGTGCTTGGGTCTCAGCAATGTTCTGTTTTGAGTTTAGAAAGTGTAAATACAATACATTTAGATGAAAATCAAAAGTTTGTGCACAAGCAACAGATAGTGTCTTCTTCAATGGTTATTTCTGACAATTTCTACACTCCCTACGCTGTGGTGTATGGCTTGTTTAGTGGGGATATAGAGGTTGTGCACTTCGATTTATTACAGGGGTTAGCTCCTTATTTTGACAGTTTGCAATGTAAAGTTGATTCGCATGGACCAAAACAATATTTTTTGGGACATACTGGACCGGTTCTATGCTTAGCAGCTCATGGAATGATGGAGGTTGTCAGAGGATGGAGTTTCAAGCGAGTGCTACTATCTGGAAGTATGGATTGTACCATTCGAATATGGGATCTTCACTCTGGAAATCTTATCTCTATAATGCACCAGCATGTGGCTCCGGTGCGGCAGATAATCCTTCCTCCGACTCAGACTGGCCATCCTTGGAGTGATTGTTTTCTCTCCGTTGGGGAAGATTCTTGCATTGCTCTTACTTCTCTGGAGACTTTACGGGTGGAAAGAATGTTTCCTGGACACCCGAGCTATCCTGCAAAAGTTGTGTGGGATGGTGCAAGAGGCTACATTGCATGTCTCTGCAAAAACTATTCTGTGACATCTGATGCCGTAGATATGTTATACATTTGGGACATAAAGACCGCCGCCCGTGAACGGGTTCTTCGTGGGACTGCTTCTCATTCCATGTTTGATCATTTTTGTAAAGGCATTAGCAAAAGTTCCTCTTCTGGAATTATATTAAATGGAAATACCTCAGCTTCCTCATTACTAGTTTCAACAAGTGAAGATAGGAGTCTTTCTCGGTCTCATTCTAGTAACCTAAGTCAGTTGGCTCCTACATCATATTCAAGTTTGACAAGTCTAATAAAAAATAGTACTTCCCAAGCATATGCCATTCCCCAGAGCAGCAGGTATCCCATATGTTCTTCCCCATTCCCTGGAATTGCTACCCTGAGTTTTGATCTTGCATCGATAATGTCTTTTAATCAGAAATCCAAGTCAGGAACAAATGGTGGTCATATTCAAGAGATTATCATTTCAAAGGAACAGGAAACTAAGATATCAAGGGCGGCCCATGCGACTGTTGAAGGTGGTTCAGTTATGCCTGTGGTATCAAATGAATGTAAAGACAAGCTTGACTTAATTAAGTCACTTGAAGAGTATTTCATTCAATCTAGCTTGTCCTTTTTACACTTATGGGATTTGGATACTAAGCTTGACAGTTTGCTAGTAACAGATATGAAGTTAAAGAGACCAGAGAGTTTTATAGTGTCTGCAGGTCTGCAGGGGGACAGAGGTTCGTTGACTGTGACATTTCCTGGTTTGAATGCTATTCTTGAGCTTCTGAAATCATCCCCCGAGTTTTGTGCGATGAGGTCACTCACAATGGTGTCCCTTGCCCAACACACGATAAGCTTGTCTCACTCTGGTTCAGCTGCCAGCAGTGACTTAGCGGCATTCTATACTAGGAATATTGCAGACAAAATTCCAGATATGAAACCTCCCTTACTCCAGCTTTTGGTGAGCTTCTGGCAAGATGAAAGTGAACATGTCCGTATGGCTGCACGGTCTCTATTCCATTGTGCTGCTTCCCGGGGAATTCCTCTTCCCCTAGGTGGTCAAATGTCAACTGAACATGGAAATCCTCCAGAAACTGAGGGAGTTTCTGAAGATGAGGAATCTAACATTCGTGCTTGGCTTGAATCATTTGAAATGCAAGACTGGGTTTCATGTGTTGGGGGAACCAGTCAAGATGCAATGGCATCACATATCATTGTTGCAGCGGCATTGGCTATTTGGTACCCTAGTCTTGTGAAGCCCAGCCTTCCAATGTTAGTTGTTCATCTGTTGGTGAAATTGGTGATGGCCATGAGTGAAAAATACAGTTCTACTGCAGCAGAGCTCCTTGCAGAGGGGATGCAGAGCACATGGAAAGTATGTCTTGGTTCTGAAATAACCCGTTTGATCGAGGATATATTCTTCCAGATAGAGTGTGTTAGTGGTCCATCTGCCAATTCGTCTACAAAAAGTGTTCTTGTTCCAGTTTCCATTCGGGAAACGTTGGTAGAAATTCTTCTTCCAAGTTTGGCAATGGTTGATATACCTAGTTTCCTTACAGTTGTAGAAAGCCAACTCTGGTCTACTGCATCTGATTCACCTGTTCATTTGATATCGCTCATGACTCTGATCAGAATCGTGCAGAGACATCCAAGTAACTTGGCACAATACCTTGATAAGGTTGTTAGCTTCATTTTACAAACTATGGACCCTAGCAACTCAGTCATGCGCAAATCTTGCTTTCAGAGTTCAATGACTGCATTAAAGGAAGTTGTACGTGCCTTCCCTATGGTAGCATTGAATGATTCCTGGACAAAATTGGCCGTTGGCGACATAATTGGAGAGATTAATAGTGCTAGAATTCAGGTGTATGATGTGCAAAGTGTTACGAAGATTAAGGTTTTGGATGCAAGTGGACCTCCAGGACTTCCAAGTTTGCTTGCAGCTGGGTCTGAATCGATGGTAACAACTGCAATCTCAGCTTTGAGTTTTTCCCCAGATGGAGAGGGGGTGGTTGCATTTTCCGAGAACGGTTTGATGATCAGATGGTGGTCACTGGGATCTGTTTGGTGGGAGAAACTTAGCCGGAACTTTGTTCCTGTCCAATGCACCAAACTGATCTTTATTCCTCCATGGGAGGGATTCTCACCAAATTCTTCAAGATCAAGCATTATGGCAAGAATTATGGAAGATGATCAAAAGGCCAACTCGCAGGACAAAAACAGAAAGAGTTTCAATCGTGTGGACAGTTTCCGGCAGTTGATTCACAATCTTGACCTCTCTTATCAGCTAGATTGGATTTCTGAACGGAAGGTAAATCTTATAAGGCATGGCCATGAGTTGGGAACCTTCCAATTCTAG 4083 42.47 MRKQNLQVTIRRSGHCRRRRKLPAWVGSPSMIRTLPSKPRYVIMGCCFIDSGHLSDHHPPVEPAEGSEVLADRESQHRKQPKCTVVIVDTYSLTIVQTIVHGILSVGSLKFMEVVSSIEDEEKHSVIMADFFGRLQLVSLPKEPHQDGDSGMGLHKAQFETAVWGDILNERGQVLSIDTQGNLIAFLLHDHCIFKLLSSGLTIGEISFVDSFPCLEQDSSQRHRIGGMFLDKGDTENTVNTKASHEPLEVKFMIWNASGFAIVYIISYLNDAFKCEPHLEIPTACYSPDIRLSISFSQLNHCLLRVESISSQVEEPLHWTPNFKIWSLCKKYDDHQKFCQQGRLLGEGSSLFDWIPKSSLLNERQGQHGESVLGSQQCSVLSLESVNTIHLDENQKFVHKQQIVSSSMVISDNFYTPYAVVYGLFSGDIEVVHFDLLQGLAPYFDSLQCKVDSHGPKQYFLGHTGPVLCLAAHGMMEVVRGWSFKRVLLSGSMDCTIRIWDLHSGNLISIMHQHVAPVRQIILPPTQTGHPWSDCFLSVGEDSCIALTSLETLRVERMFPGHPSYPAKVVWDGARGYIACLCKNYSVTSDAVDMLYIWDIKTAARERVLRGTASHSMFDHFCKGISKSSSSGIILNGNTSASSLLVSTSEDRSLSRSHSSNLSQLAPTSYSSLTSLIKNSTSQAYAIPQSSRYPICSSPFPGIATLSFDLASIMSFNQKSKSGTNGGHIQEIIISKEQETKISRAAHATVEGGSVMPVVSNECKDKLDLIKSLEEYFIQSSLSFLHLWDLDTKLDSLLVTDMKLKRPESFIVSAGLQGDRGSLTVTFPGLNAILELLKSSPEFCAMRSLTMVSLAQHTISLSHSGSAASSDLAAFYTRNIADKIPDMKPPLLQLLVSFWQDESEHVRMAARSLFHCAASRGIPLPLGGQMSTEHGNPPETEGVSEDEESNIRAWLESFEMQDWVSCVGGTSQDAMASHIIVAAALAIWYPSLVKPSLPMLVVHLLVKLVMAMSEKYSSTAAELLAEGMQSTWKVCLGSEITRLIEDIFFQIECVSGPSANSSTKSVLVPVSIRETLVEILLPSLAMVDIPSFLTVVESQLWSTASDSPVHLISLMTLIRIVQRHPSNLAQYLDKVVSFILQTMDPSNSVMRKSCFQSSMTALKEVVRAFPMVALNDSWTKLAVGDIIGEINSARIQVYDVQSVTKIKVLDASGPPGLPSLLAAGSESMVTTAISALSFSPDGEGVVAFSENGLMIRWWSLGSVWWEKLSRNFVPVQCTKLIFIPPWEGFSPNSSRSSIMARIMEDDQKANSQDKNRKSFNRVDSFRQLIHNLDLSYQLDWISERKVNLIRHGHELGTFQF 1360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3905592 3913176 - Conep09aG0083100.1 Cone9ag0813 444976

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0813 1360 PANTHER RABCONNECTIN-3B, ISOFORM A 11 1360 IPR049916 GO:0005737(PANTHER)
Cone9ag0813 1360 SMART WD40_4 504 549 IPR001680 GO:0005515(InterPro)
Cone9ag0813 1360 SMART WD40_4 552 599 IPR001680 GO:0005515(InterPro)
Cone9ag0813 1360 SMART WD40_4 453 501 IPR001680 GO:0005515(InterPro)
Cone9ag0813 1360 SMART WD40_4 1223 1259 IPR001680 GO:0005515(InterPro)
Cone9ag0813 1360 SUPERFAMILY WD40 repeat-like 456 660 IPR036322 GO:0005515(InterPro)
Cone9ag0813 1360 ProSiteProfiles Trp-Asp (WD) repeats profile. 488 510 IPR001680 GO:0005515(InterPro)
Cone9ag0813 1360 Pfam WD domain, G-beta repeat 459 501 IPR001680 GO:0005515(InterPro)
Cone9ag0813 1360 Gene3D - 399 709 IPR015943 GO:0005515(InterPro)
Cone9ag0813 1360 MobiDBLite consensus disorder prediction 927 946 - -
Cone9ag0813 1360 ProSitePatterns Trp-Asp (WD) repeats signature. 488 502 IPR019775 -
Cone9ag0813 1360 SUPERFAMILY ARM repeat 833 1238 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0813 K24738 - - mdm:103439192 1641.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0814 Cone-Chr6:4130196 Cone9ag0813 Cone-Chr9:3905592 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g47 . Blo03g00223 Bda06g00120 . . Bpe07g00097 . . . . . . . . . . . . . . . . . . Cla07g00745 Cam07g0798 Cec07g0863 Cco07g0835 Clacu07g0778 Cmu07g0786 Cre07g1139 . . Cone6ag0814 Cone9ag0813 . . . Cme07g01612 . . . . . . . Bma12g00068 . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00613 Chy07g01198 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007130 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 3 1 37