Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0815 ATGGTTTTGATGGACGAAGCTGTTCTTGATGATATTATACGACGGCTTGTCGGTGCCAAGAACGGTCGGACTACGAGACAGGTGCAGCTCTCGGAGGCGGAAATCAAACAGCTTTGCCTTTCGTCCAAGGAGATCTTTCTCAGCCAACCGAATCTTCTCGAGCTCGAAGCTCCGATTAAAATTTGCGGAGATGTACATGGTCAGTTTTCAGATCTTCTAAGACTGTTTGAATATGGCGGTTACCCTCCCGAAGCAAATTATTTATTCCTAGGTGACTATGTTGATCGTGGTAAGCAGGGCATTGAGACCGTTTGCCTTCTCCTTGCCTACAAAGTCAAATACAGGGAGAACTTCTTTCTACTGAGGGGCAACCATGAATGTGCTTCCATAAACCGAATATATGGATTCTACGACGAGTGCAAGAGGAGATTTAATGTTCGGGTCTGGAAGACTTTTACGGAGTGCTTTAACTGTTTACCTGTTGCTGCTCTAATAGATGAGAAGATTCTTTGTATGCATGGAGGACTCTCTCCTGATTTGCAAAACTTGGATCAGATTAGGAGTATTGCTCGGCCTGTTGATGTGCCGGACCAGGGCCTTCTCTGTGACTTGCTATGGGCTGATCCAGATAAAGATATTGAAGGTTGGGGAGAAAATGATCGGGGTGTGTCTTATACCTTTGGGGCTGATAAGGTTGCTGAGTTTCTCCAGAAACATGACCTTGACCTTGTTTGCCGTGCCCACCAGGTGGTGGAAGATGGATATGAGTTTTTTGCTAAGCGACAGCTAGTGACGGTATTTTCAGCACCCAATTATTGTGGGGAGTTTGATAATGCAGGTGCCATGATGAGTGTTGACGGTACTTTAACATGTTCCTTCCAAATACTTAAAGCTTCAGAGAAGAAAGGAAAAGGTGGATATGGAAATATGTTGAGACCTGGAACCCCTCCCCATAAGGGTGGGAAGGTCTAG 972 45.37 MVLMDEAVLDDIIRRLVGAKNGRTTRQVQLSEAEIKQLCLSSKEIFLSQPNLLELEAPIKICGDVHGQFSDLLRLFEYGGYPPEANYLFLGDYVDRGKQGIETVCLLLAYKVKYRENFFLLRGNHECASINRIYGFYDECKRRFNVRVWKTFTECFNCLPVAALIDEKILCMHGGLSPDLQNLDQIRSIARPVDVPDQGLLCDLLWADPDKDIEGWGENDRGVSYTFGADKVAEFLQKHDLDLVCRAHQVVEDGYEFFAKRQLVTVFSAPNYCGEFDNAGAMMSVDGTLTCSFQILKASEKKGKGGYGNMLRPGTPPHKGGKV 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3920141 3922621 - Conep09aG0083300.1 Cone9ag0815 444978

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0815 323 Pfam Calcineurin-like phosphoesterase 58 251 IPR004843 GO:0016787(InterPro)
Cone9ag0815 323 ProSitePatterns Serine/threonine specific protein phosphatases signature. 121 126 IPR006186 GO:0016787(InterPro)
Cone9ag0815 323 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 9 298 IPR050341 GO:0004722(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)
Cone9ag0815 323 Pfam Serine-threonine protein phosphatase N-terminal domain 9 56 IPR031675 -
Cone9ag0815 323 PRINTS Serine/threonine phosphatase family signature 240 260 IPR006186 GO:0016787(InterPro)
Cone9ag0815 323 PRINTS Serine/threonine phosphatase family signature 262 278 IPR006186 GO:0016787(InterPro)
Cone9ag0815 323 PRINTS Serine/threonine phosphatase family signature 87 114 IPR006186 GO:0016787(InterPro)
Cone9ag0815 323 PRINTS Serine/threonine phosphatase family signature 120 144 IPR006186 GO:0016787(InterPro)
Cone9ag0815 323 PRINTS Serine/threonine phosphatase family signature 183 210 IPR006186 GO:0016787(InterPro)
Cone9ag0815 323 PRINTS Serine/threonine phosphatase family signature 154 180 IPR006186 GO:0016787(InterPro)
Cone9ag0815 323 PRINTS Serine/threonine phosphatase family signature 58 85 IPR006186 GO:0016787(InterPro)
Cone9ag0815 323 SUPERFAMILY Metallo-dependent phosphatases 25 300 IPR029052 -
Cone9ag0815 323 SMART pp2a_7 30 300 IPR006186 GO:0016787(InterPro)
Cone9ag0815 323 MobiDBLite consensus disorder prediction 304 323 - -
Cone9ag0815 323 CDD MPP_PP1_PPKL 8 297 - -
Cone9ag0815 323 Gene3D - 2 309 IPR029052 -
Cone9ag0815 323 FunFam Serine/threonine-protein phosphatase 2 306 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0815 K06269 - - cit:102611078 628.632
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag1090 Cone-Chr7:8271525 Cone9ag0815 Cone-Chr9:3920141 7.72E-187 dispersed
Cone8ag1565 Cone-Chr8:11695438 Cone9ag0815 Cone-Chr9:3920141 9.09E-69 dispersed
Cone9ag0048 Cone-Chr9:245465 Cone9ag0815 Cone-Chr9:3920141 3.53E-95 dispersed
Cone6ag0815 Cone-Chr6:4142641 Cone9ag0815 Cone-Chr9:3920141 2.53E-240 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g50 Blo02g01122 Blo03g00225 Bda06g00121 Bda08g00504 Bpe05g00660 Bpe07g00095 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0815 Cone9ag0815 . . . . . . . . . . Bma05g00834 Bma12g00065 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000122 12 6 9 10 10 5 9 5 6 6 6 6 9 6 6 8 6 16 7 6 6 6 6 6 6 6 5 12 7 7 221