Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0825 ATGGTTTCAAATACAACAGCAGCAGCAGCACACATTTGTGTCCCTCCAATGAAAGTCACCTCAAACGGCATATTCCAGGGCGATAATCCTCTAGATTCTGCTCTCCCTCTCCTCATCTTACAGGTCGTTTTAGTTGTTACACTCACCAGATGCCTCGCCTTTCTCTTGAAGCCATTGAGACAGCCCCGTGTCATTGCAGAGATTATAGGAGGAATCCTACTCGGCCCATCCGCTCTAGGACGAAACAAAACCTACATAAACACAATCTTTCCGTCAAAAAGCCTCTTAGTATTAGACACGGTAGCAAACATTGGTCTATTGCTATTTCTATTCCTAGTGGGCCTTGAACTGGACCCAAAATCGATCCGTAAAACCGGAAAGAAAGCATTAGCCATTGCAATAGCCGGGATCAGCCTTCCTTTCGCGCTAGGGATCGGCACCTCCTATATCCTCCGAGCAACCATCTCTAAAGGTGTGGATAGCATCGCATTCCTGGTGTTTATGGGAGTAGCCCTTTCCATAACCGCCTTCCCTGTCTTGGCTCGTATTCTAGCCGAGCTCAAGCTATTAACAACTAACATAGGAAGACTTGCCATGTCAGCAGCAGCGGTTAATGATGTTGCTGCTTGGATTCTTCTTGCTTTAGCAATCGCTTTGTCTGGTTCCGGACAATCTCCTTTAGTTGCTGTCTGGGCTCTTTTTTCTGGGTGCGGTTTTATCATCTGTTCGATTCTTTTAATATCTCCCATCCTTAAATGGATGGCCAAACAGTGTCCAGAAGGAGAGCCGGTGAAAGAGATTTATGTCTGTGCGACTCTTGTTATTGTTCTTGCAGCCGGATTTGTTACAGATGCGATTGGAATCCATGCCATGTTTGGAGCTTTTGTGGTTGGAATTTTGGTTCCAAAAGATGGACCGTTTAGAAGCGTTTTAGTTGAGAAAGTGGAGGATCTAGTTTCGGGTATTTTTCTGCCATTGTATTTTGTTTCAAGTGGATTGAAGACCAATATAGCCACGATTCAAGGGGTCCGTTCTTGGGGTCTTTTAGGTTTAGTTATAGTAACGGCTTGTTTTGGGAAAATTGTTGGTAGTACGGCTGTTTCCTTGCTTTGCAAGATACCTTTTAGAGAAGCTCTCACCCTCGGGTTTTTGATGAATAGTAAAGGATTGGTCGAGGTCATTGTCCTTAACATTGGTAGAGACAGAAAGGTTTTGAATGATCAAACATTTGCAATTATGGTTCTCATGGCACTTTTTACAACCTTCATCACCACACCTCTTGTTGTTTTCTTCTACAAGCCGGGAAAAAGGGGATCTTTATTGGCTGGTTACAAGCACCGGAAAATTGAAAGGAAGAACCGGACAGACCCTGAGCTAAGAATCTTAACATGCTTCCATGGAGCAAGAAACATTCCGTCGCTGATTAACCTCCTAGAGGCCTCAAGAGGGACTGATAAGCGCAAAGGGCTTTGCGTCTATGCAATGCACCTCATGGAACTTTCCGAACGACCCTCTGCTATTCTAATGGTGCATAAGGCAAGAAAAAATGGTCGACCCTTCTGGAACAAAAGTCAAGGATCAGCCTCTGACCGAATGACTGTTGCTTTCGAGAGTTACGAGCAGTTAAGCCATGTTTCGATCCGTCCAATGACTGCAATCTCATCAATGTCTGATATACATGAAGATATTAACACGACTGCTGAGAGAAAGAGAGTGGCCATTATAATTCTCCCCTTCCATAAGCACCAGAAAATGGATGGTTCACTAGAGATTACTCAGAGTAGCTTCCGGATGGTCAACCAGAAGGTTCTAGAGAATGCTCCTTGTTCAGTTGGGATTCTTGTTGACCGCGGACTTGGCGGGACCACTCACATCTCGGCGGGTAATGTTTCTTATTTTGTTGTCGCACTTTTCTTTGGTGGTCGTGATGACAGAGAAGCACTTGCATATGCGGCCCGCATGGCAGAACACTCCGGGATTAAGTTAATGGCGATCCGTTTCTTACTGGACTTGGACAATATTGTGGAGGAGATAGCTGGAGATGAAGAGTTTCTTTTGGAGTTCAAGCAAGATGTGGCGAAGAAGAATCCCCTAATATATGAGGAGAAAGTTGTGAGACATGTAAAGGATATTACTTCGGCTGTTAGCGAAGTAAGCAATTGCAATTTGTTTCTCGTGGGCCGGGTTTCAAATGGTGTAACTAACTTATTAAGTTCGGTTAGAAGTGACTGCCCCGAGTTGGGGCCGGTTGGGAATTTGTTGACTTTACCAGAATATTCAGTTACAGCATCGGTTCTGGTGGTGCAGCAGTACTTTAGTGGGGGGATATCTCAAGTTTCGACTTCGTCTGTGGAGCAAAGCTTGGGCGACGGAATATCAGATTCTGCTTAA 2391 44.75 MVSNTTAAAAHICVPPMKVTSNGIFQGDNPLDSALPLLILQVVLVVTLTRCLAFLLKPLRQPRVIAEIIGGILLGPSALGRNKTYINTIFPSKSLLVLDTVANIGLLLFLFLVGLELDPKSIRKTGKKALAIAIAGISLPFALGIGTSYILRATISKGVDSIAFLVFMGVALSITAFPVLARILAELKLLTTNIGRLAMSAAAVNDVAAWILLALAIALSGSGQSPLVAVWALFSGCGFIICSILLISPILKWMAKQCPEGEPVKEIYVCATLVIVLAAGFVTDAIGIHAMFGAFVVGILVPKDGPFRSVLVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGVRSWGLLGLVIVTACFGKIVGSTAVSLLCKIPFREALTLGFLMNSKGLVEVIVLNIGRDRKVLNDQTFAIMVLMALFTTFITTPLVVFFYKPGKRGSLLAGYKHRKIERKNRTDPELRILTCFHGARNIPSLINLLEASRGTDKRKGLCVYAMHLMELSERPSAILMVHKARKNGRPFWNKSQGSASDRMTVAFESYEQLSHVSIRPMTAISSMSDIHEDINTTAERKRVAIIILPFHKHQKMDGSLEITQSSFRMVNQKVLENAPCSVGILVDRGLGGTTHISAGNVSYFVVALFFGGRDDREALAYAARMAEHSGIKLMAIRFLLDLDNIVEEIAGDEEFLLEFKQDVAKKNPLIYEEKVVRHVKDITSAVSEVSNCNLFLVGRVSNGVTNLLSSVRSDCPELGPVGNLLTLPEYSVTASVLVVQQYFSGGISQVSTSSVEQSLGDGISDSA 796
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3996401 3999845 - Conep09aG0084300.1 Cone9ag0825 444988

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0825 796 FunFam Cation/H(+) antiporter 15 37 439 - -
Cone9ag0825 796 PANTHER CATION/H + ANTIPORTER 12 776 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
Cone9ag0825 796 Gene3D - 37 437 IPR038770 -
Cone9ag0825 796 Pfam Sodium/hydrogen exchanger family 47 427 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0825 K26731 - - mdm:114821014 1061.6
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1271 Cone-Chr6:10152369 Cone9ag0825 Cone-Chr9:3996401 6.67E-248 dispersed
Cone7ag0072 Cone-Chr7:306194 Cone9ag0825 Cone-Chr9:3996401 1.65E-109 dispersed
Cone7ag0073 Cone-Chr7:310621 Cone9ag0825 Cone-Chr9:3996401 1.49E-115 dispersed
Cone9ag0825 Cone-Chr9:3996401 Cone9ag0826 Cone-Chr9:4014052 0 tandem
Cone6ag0824 Cone-Chr6:4210873 Cone9ag0825 Cone-Chr9:3996401 7.00E-69 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone6ag1271 . 11 821 Antiporter Super Family AT2G13620 68.4 0.0e+00 1120.9
Cone12ag0018 . 6 792 Antiporter Super Family AT2G13620 69.8 0.0e+00 1094.7
Cone8ag0012 . 1 231 Antiporter Super Family AT2G13620 56.9 2.1e-74 278.1
Cone10ag0300 . 76 831 Antiporter Super Family AT3G53720 69.4 4.5e-297 1017.7
Cone10ag0299 . 77 804 Antiporter Super Family AT3G53720 57.3 1.2e-228 790.4
Cone6ag0825 . 83 781 Antiporter Super Family AT3G53720 50.3 7.9e-185 644.8
Cone9ag0826 . 1 803 Antiporter Super Family AT5G41610 65.7 1.3e-299 1026.2
Cone6ag0825 . 1 807 Antiporter Super Family AT5G41610 65.4 1.6e-297 1019.2
Cone9ag0825 . 1 777 Antiporter Super Family AT5G41610 65.3 7.3e-290 993.8
Cone14ag0671 . 1 783 Antiporter Super Family AT5G41610 62.9 9.2e-277 950.3
Cone10ag0300 . 1 806 Antiporter Super Family AT5G41610 51.4 1.3e-209 727.2
Cone15ag0680 . 1 348 Antiporter Super Family AT5G41610 52.2 3.9e-102 370.2
Cone15ag0681 . 1 146 Antiporter Super Family AT5G41610 52.7 2.2e-36 151.8
Cone6ag0825 . 11 808 Antiporter Super Family AT4G23700 65.1 3.9e-283 971.5
Cone9ag0826 . 11 808 Antiporter Super Family AT4G23700 64.8 5.6e-282 967.6
Cone9ag0825 . 13 788 Antiporter Super Family AT4G23700 60.8 2.9e-270 928.7
Cone14ag0671 . 8 804 Antiporter Super Family AT4G23700 58.3 4.5e-263 904.8
Cone15ag0680 . 1 343 Antiporter Super Family AT4G23700 52.2 8.3e-100 362.5
Cone15ag0681 . 9 146 Antiporter Super Family AT4G23700 56.6 3.1e-38 157.9
Cone14ag0671 . 5 801 Antiporter Super Family AT3G17630 71.3 0.0e+00 1092.0
Cone6ag0825 . 4 782 Antiporter Super Family AT3G17630 65.3 1.4e-282 969.5
Cone9ag0825 . 13 771 Antiporter Super Family AT3G17630 66.3 1.8e-280 962.6
Cone9ag0826 . 4 782 Antiporter Super Family AT3G17630 64.1 2.0e-279 959.1
Cone10ag0300 . 8 804 Antiporter Super Family AT3G17630 51.4 8.4e-206 714.5
Cone15ag0680 . 1 354 Antiporter Super Family AT3G17630 62.9 2.0e-127 454.1
Cone6ag0825 . 1 782 Antiporter Super Family AT1G64170 58.6 6.4e-246 847.8
Cone9ag0826 . 11 782 Antiporter Super Family AT1G64170 59.1 4.2e-245 845.1
Cone9ag0825 . 14 784 Antiporter Super Family AT1G64170 55.5 6.1e-228 788.1
Cone14ag0671 . 7 782 Antiporter Super Family AT1G64170 52.9 3.2e-221 765.8
Cone6ag1271 . 11 821 Antiporter Super Family AT2G13620 68.4 0.0e+00 1120.9
Cone12ag0018 . 6 792 Antiporter Super Family AT2G13620 69.8 0.0e+00 1094.7
Cone8ag0012 . 1 231 Antiporter Super Family AT2G13620 56.9 2.1e-74 278.1
Cone6ag0825 . 1 782 Antiporter Super Family AT1G64170 58.6 6.4e-246 847.8
Cone9ag0826 . 11 782 Antiporter Super Family AT1G64170 59.1 4.2e-245 845.1
Cone9ag0825 . 14 784 Antiporter Super Family AT1G64170 55.5 6.1e-228 788.1
Cone14ag0671 . 7 782 Antiporter Super Family AT1G64170 52.9 3.2e-221 765.8
Cone6ag0825 . 11 808 Antiporter Super Family AT4G23700 65.1 3.9e-283 971.5
Cone9ag0826 . 11 808 Antiporter Super Family AT4G23700 64.8 5.6e-282 967.6
Cone9ag0825 . 13 788 Antiporter Super Family AT4G23700 60.8 2.9e-270 928.7
Cone14ag0671 . 8 804 Antiporter Super Family AT4G23700 58.3 4.5e-263 904.8
Cone15ag0680 . 1 343 Antiporter Super Family AT4G23700 52.2 8.3e-100 362.5
Cone15ag0681 . 9 146 Antiporter Super Family AT4G23700 56.6 3.1e-38 157.9
Cone9ag0826 . 1 803 Antiporter Super Family AT5G41610 65.7 1.3e-299 1026.2
Cone6ag0825 . 1 807 Antiporter Super Family AT5G41610 65.4 1.6e-297 1019.2
Cone9ag0825 . 1 777 Antiporter Super Family AT5G41610 65.3 7.3e-290 993.8
Cone14ag0671 . 1 783 Antiporter Super Family AT5G41610 62.9 9.2e-277 950.3
Cone10ag0300 . 1 806 Antiporter Super Family AT5G41610 51.4 1.3e-209 727.2
Cone15ag0680 . 1 348 Antiporter Super Family AT5G41610 52.2 3.9e-102 370.2
Cone15ag0681 . 1 146 Antiporter Super Family AT5G41610 52.7 2.2e-36 151.8
Cone14ag0671 . 5 801 Antiporter Super Family AT3G17630 71.3 0.0e+00 1092.0
Cone6ag0825 . 4 782 Antiporter Super Family AT3G17630 65.3 1.4e-282 969.5
Cone9ag0825 . 13 771 Antiporter Super Family AT3G17630 66.3 1.8e-280 962.6
Cone9ag0826 . 4 782 Antiporter Super Family AT3G17630 64.1 2.0e-279 959.1
Cone10ag0300 . 8 804 Antiporter Super Family AT3G17630 51.4 8.4e-206 714.5
Cone15ag0680 . 1 354 Antiporter Super Family AT3G17630 62.9 2.0e-127 454.1
Cone10ag0300 . 76 831 Antiporter Super Family AT3G53720 69.4 4.5e-297 1017.7
Cone10ag0299 . 77 804 Antiporter Super Family AT3G53720 57.3 1.2e-228 790.4
Cone6ag0825 . 83 781 Antiporter Super Family AT3G53720 50.3 7.9e-185 644.8
Cone20ag1063 . 36 798 Antiporter Super Family AT3G52080 51.2 1.7e-214 743.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000528 2 8 3 3 2 4 4 4 4 4 4 4 4 3 3 4 4 5 2 4 4 2 2 3 4 4 2 5 5 5 111