Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0836 ATGAGCAGCCGGAAAACTAGAAGATCGCCGTGGAGACGGCGATTATTGATCGTTAATCTGGCCGAGGAGGCGAAACCCTCGACTGAAGGAGTTAAGGCTCCGAGTAATGCCTTCCTCAGCATCTGCAAGTCTCTCTGCGCCGGAGGAATCGCCGGCGGAGTGTCACGTACTGCAGTTGCACCATTGGAAAGACTGAAGATTTTGCTTCAGGTTCAAAATCCTCATAGTATAAAGTATAAGGGAACCATTCAGGGCTTGAAATACATCTGGAGAGCTGAGGGATTCAGAGGATTGTTCAAAGGCAATGGAACTAATTGCGTGCGCATTGTCCCAAATTCGGCAGTCAAGTTCTTTAGTTATGAGGAAGCATCTAGGGGCATCCTCTGGCTGTATCGACAGCAAACTGGACATGAAGATGCTCAACTTACTCCAGTCCTACGCCTTGGAGCTGGTGCTTGTGCAGGTATTATTGCAATGTCTGCAACTTACCCAATGGACCTTGTACGAGGTCGGCTCACTGTTCAGACAGAAAAGTCTCCTTACCAGTATAGAGGAATTTTTCATGCTCTTTCAACAGTCCTTCGGGAAGAAGGTCCTCGTGCTGTATACAAAGGCTGGCTGCCATCCGTCATAGGAGTAATACCATATGTGGGTCTCAACTTTGCTGTATATGAATCTTTGAAGGACTGGTTGTTAAAAAGCAAGCCTTTTGGGCTAGTCCAGGACCCTGAGTTGAGTGTGACTACTAGACTTGCATGTGGTGCTGTTGCTGGAACTGTGGGCCAGACAGTTGCTTACCCACTTGATGTTGTTCGTCGAAGGATGCAAATGGTGGGTTGGAAAGATGCTGCCTCGGTTGTTACTGGTGGTGGGGTGAGTAAAACATCCCTTGAATACAGCGGCATGATTGATACGTTCAGGAAAACTGTTCAGCATGAGGGATTTGGTGCTTTATACAAGGGTTTGGTCCCCAATTCAGTAAAGGTGGTGCCATCAATAGCAATTGCATTTGTGACTTACGAAGTAGTGAAGGATGTTCTTGGAGTTGAGATGAGGATTTCCGACTGA 1068 47.19 MSSRKTRRSPWRRRLLIVNLAEEAKPSTEGVKAPSNAFLSICKSLCAGGIAGGVSRTAVAPLERLKILLQVQNPHSIKYKGTIQGLKYIWRAEGFRGLFKGNGTNCVRIVPNSAVKFFSYEEASRGILWLYRQQTGHEDAQLTPVLRLGAGACAGIIAMSATYPMDLVRGRLTVQTEKSPYQYRGIFHALSTVLREEGPRAVYKGWLPSVIGVIPYVGLNFAVYESLKDWLLKSKPFGLVQDPELSVTTRLACGAVAGTVGQTVAYPLDVVRRRMQMVGWKDAASVVTGGGVSKTSLEYSGMIDTFRKTVQHEGFGALYKGLVPNSVKVVPSIAIAFVTYEVVKDVLGVEMRISD 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4096979 4102275 - Conep09aG0085600.1 Cone9ag0836 444999

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0836 355 FunFam Mitochondrial substrate carrier 37 349 - -
Cone9ag0836 355 Gene3D Mitochondrial carrier domain 36 349 IPR023395 -
Cone9ag0836 355 SUPERFAMILY Mitochondrial carrier 38 342 IPR023395 -
Cone9ag0836 355 PANTHER SOLUTE CARRIER FAMILY 25 33 347 - -
Cone9ag0836 355 PRINTS Mitochondrial carrier protein signature 57 71 IPR002067 GO:0055085(InterPro)
Cone9ag0836 355 PRINTS Mitochondrial carrier protein signature 157 175 IPR002067 GO:0055085(InterPro)
Cone9ag0836 355 PRINTS Mitochondrial carrier protein signature 101 121 IPR002067 GO:0055085(InterPro)
Cone9ag0836 355 PRINTS Mitochondrial carrier protein signature 203 221 IPR002067 GO:0055085(InterPro)
Cone9ag0836 355 PRINTS Mitochondrial carrier protein signature 44 57 IPR002067 GO:0055085(InterPro)
Cone9ag0836 355 PRINTS Mitochondrial carrier protein signature 254 276 IPR002067 GO:0055085(InterPro)
Cone9ag0836 355 ProSiteProfiles Solute carrier (Solcar) repeat profile. 142 230 IPR018108 -
Cone9ag0836 355 Pfam Mitochondrial carrier protein 40 125 IPR018108 -
Cone9ag0836 355 Pfam Mitochondrial carrier protein 245 347 IPR018108 -
Cone9ag0836 355 Pfam Mitochondrial carrier protein 142 234 IPR018108 -
Cone9ag0836 355 ProSiteProfiles Solute carrier (Solcar) repeat profile. 245 346 IPR018108 -
Cone9ag0836 355 ProSiteProfiles Solute carrier (Solcar) repeat profile. 39 126 IPR018108 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0836 K14684 - - rcu:8268649 607.446
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag1469 Cone-Chr18:9815622 Cone9ag0836 Cone-Chr9:4096979 6.23E-57 dispersed
Cone1ag1250 Cone-Chr1:56101032 Cone9ag0836 Cone-Chr9:4096979 6.49E-40 dispersed
Cone5ag0234 Cone-Chr5:992390 Cone9ag0836 Cone-Chr9:4096979 9.81E-37 dispersed
Cone8ag1517 Cone-Chr8:11444879 Cone9ag0836 Cone-Chr9:4096979 4.91E-25 dispersed
Cone9ag0836 Cone-Chr9:4096979 Cone9ag1478 Cone-Chr9:10908961 3.92E-39 dispersed
Cone11ag0478 Cone-Chr11:2416386 Cone9ag0836 Cone-Chr9:4096979 5.05E-211 wgd
Cone18ag1031 Cone-Chr18:7616034 Cone9ag0836 Cone-Chr9:4096979 9.79E-211 wgd
Cone6ag0839 Cone-Chr6:4286484 Cone9ag0836 Cone-Chr9:4096979 1.94E-243 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g109 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0839 Cone9ag0836 . . . . . . . . . . . . . . . Cma06g01029 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003572 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 2 2 2 2 1 2 2 4 2 47