Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0838 ATGACAGAAAAGCAGAGGAAGCCTTATGAAGAGATTGCAACAAAGAACAAGGAAAAGTATGTGATAGAAATGGAAGTTTACAAACAGAAGAAGGAGGAGGAAGCTGCAATTCACGAAAAGGAAGAGGACGAGCACATGAAACTTCAGAAACAGGAAGCTTTGCAGTTGCTCAAGAAGAAGGAGAAAACAGAGAATATAATCAAGAAAACTAAGGAGGATCGTCAGAAGAAGAAGAAAGAGAGGGAAGAGAAGAAGGCTGTTGACCCTAACAAGCCAAAGAAGCCTGCCGGATCTTTCTTTCTATTCTGTAGAGAAACAAGGAAGAGTTTAACAGAGGAGGTACCTGGCATTAACAACTCTACACTTACTGCAATGATTTCAATGAAATGGAAGGAACTGAAGGAGGAAGAGAAGAAAGTCTGGAACGATAAAGCTGCAGAAGCTATGGAGGCTTACAAGAAGGAACTGGAAGACTACAACAAGTCTGTTGTTACATTGAAGCAGGATGGGGACAAAAAAGCCTGA 525 41.14 MTEKQRKPYEEIATKNKEKYVIEMEVYKQKKEEEAAIHEKEEDEHMKLQKQEALQLLKKKEKTENIIKKTKEDRQKKKKEREEKKAVDPNKPKKPAGSFFLFCRETRKSLTEEVPGINNSTLTAMISMKWKELKEEEKKVWNDKAAEAMEAYKKELEDYNKSVVTLKQDGDKKA 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4108447 4109155 - Conep09aG0085800.1 Cone9ag0838 445001

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0838 174 Gene3D High mobility group box domain 72 169 IPR036910 -
Cone9ag0838 174 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 92 160 IPR009071 -
Cone9ag0838 174 MobiDBLite consensus disorder prediction 59 91 - -
Cone9ag0838 174 Pfam HMG (high mobility group) box 92 160 IPR009071 -
Cone9ag0838 174 MobiDBLite consensus disorder prediction 59 94 - -
Cone9ag0838 174 SUPERFAMILY HMG-box 87 163 IPR036910 -
Cone9ag0838 174 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 1 167 IPR044601 GO:0003677(InterPro)
Cone9ag0838 174 Coils Coil 131 169 - -
Cone9ag0838 174 Coils Coil 53 87 - -
Cone9ag0838 174 Coils Coil 24 51 - -
Cone9ag0838 174 SMART hmgende2 91 161 IPR009071 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0838 K09273 - - csv:101204736 171.785
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0841 Cone-Chr6:4298018 Cone9ag0838 Cone-Chr9:4108447 2.90E-55 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g113 . . . Bda08g00480 . . . . . . . . . . . Cpe14g00470 . . . . . . . . . . . . . . . . . Cone6ag0841 Cone9ag0838 . . . Cme07g01578 . . . . . . Bma05g00859 . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00644 Chy07g01166 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013737 1 1 1 1 1 0 2 0 0 1 0 0 0 1 1 0 0 2 2 0 1 1 1 1 1 1 1 2 1 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46838 PF07297 DPM2 1.50E-34 No_clan Cone TR