Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0850 ATGGAGGAGAATAACCGACTGGTGGAGCTTTGTATCGAGTCCGCCTGCCTGAGTACTGACAGCGTGGAGAAATGGAGGCGGCAGCTGCGAAGCATCGAACGCTTGCCTTCTCAGCTCGCGGATGCTCTTTTCCGCCGTCTTCACTCGCGACGCCTCCTCCATCCTTATTTAATTGAAGTTTTCAAGTATGGCGTAGAGGAAATCAATCTCAGCGGTGATAATGCAGTGGATGCAGAATGGATGGCATACATTGGATCATGTCGCTATTTACGCATATTGTATGTTGCAGATTGCCACAGACTGACGAGTTCTGCTCTTTGGCCTATTGGTGGGATGACTAATTTGAAGGAGCTGGACCTTTCAAGATGTTTAAAGTTTACTGATGCTGGAATTAGGCATCTTTTATCCATATCAACTTTGGAAAAGCTATGGATTTCCGAAACTGGTGTTACTGCTGATGGGGTTGCCCTTCTTGCTTCCCTAGAAAACTTGATGGTCTTGGACTTGGGTGGTCTACCAGTTACTGACCACGCAATCAGTTCTCTCCAGGTGCTTACAAAATTACATTACCTGGACATTTGGGGAAGTAAAATATCTGATGATGGATCCTCTGTTCTTCAAATGTTTCCAAAGTTGAGCTTTTTGAATTTAGCTTGGACTGATGTCACAAAGTTTCCTGATCTGCCTCATCTTGAATGCTTAAACATGAGTAATTGTAACATCAACTCTGCACTTAAAGAGTATGGAGTTAAATCTCCATTAAATAAGCTCATTTTGTCTGGAACTACACTTTCAAATGAGGCCGAAGCATTGGAATATATTGAAATAAGTCTCCTACACTATCTGGATGCATCCAACTCTTCCTTTCAGAGCTTCTCCTTCTTACCTCAAATGAGAGCATTGGAATACTTGAACCTCAGCTCTACCGCATTAGGCGACGATTCAATCGAATTAATTGCATGTGTAGGGGAAAATTTGAGATATCTAAACCTCAGCAACACAGCAGTTGCCTCTCTTGGATTAGGGATTTTAGCTGGCAAAGTCCCAAACCTAGAAACTATAGAATTATCTCACACACAAATCGATGATGTTGCAATATCATATATTGCTATGATGCCTTCACTGAACACCGTCAATTTGAGCAATACAAAAATAAAAGGTTTTATTCGCCAGCCAACTGCCAATTCTGATCCATTTCTGTCACTATCAGCTCTACAAAGTCTTGGTTGTTTAAAAACATTGAATTTGGAGCAGACTCAGATTGAAGATTCAGCTCTCCGCCCTCTATCACGTTTCCAAGAGTTGAGTCATCTGCTGCTAAAAAGTCCTAAACTCACAGACATTTCCCTGCAGTATTTATCATCCCTTCCAAAGCTGGAAACTCTTGGCGTTTGTGATGCAGTTTTGACTAATAGTGCACTTGATCTGTTTAAACCTCCAAAATCTATAAGAAAGGTTGATTTAAGGGGTTGTTGGCTCTTAACTGATGATGCAATATCAGCATTTAGTAAAAGTTTTCCTCAAATTGAGCTGAAGCATGAGCTTGTTCATGAATTACCATACAACAAACTCGGTTCCTATAGGAAGTCTCCAATTCAAACTGCCAAAAGATCACAAGTGACCCCGGAGAAGGGGAAAATGCCCATGTCATCAAGTTTTGTAGATCAAAGGTTTAAGTATAGCAGAGAGGAGCTACTTGCTCTAAAGTATTCCTCTTTGCCCCTCTCATCCAGTCGAGATAAAGCTGATTCAATACCCAAGATGAACTTAACTTACAATTAA 1782 41.19 MEENNRLVELCIESACLSTDSVEKWRRQLRSIERLPSQLADALFRRLHSRRLLHPYLIEVFKYGVEEINLSGDNAVDAEWMAYIGSCRYLRILYVADCHRLTSSALWPIGGMTNLKELDLSRCLKFTDAGIRHLLSISTLEKLWISETGVTADGVALLASLENLMVLDLGGLPVTDHAISSLQVLTKLHYLDIWGSKISDDGSSVLQMFPKLSFLNLAWTDVTKFPDLPHLECLNMSNCNINSALKEYGVKSPLNKLILSGTTLSNEAEALEYIEISLLHYLDASNSSFQSFSFLPQMRALEYLNLSSTALGDDSIELIACVGENLRYLNLSNTAVASLGLGILAGKVPNLETIELSHTQIDDVAISYIAMMPSLNTVNLSNTKIKGFIRQPTANSDPFLSLSALQSLGCLKTLNLEQTQIEDSALRPLSRFQELSHLLLKSPKLTDISLQYLSSLPKLETLGVCDAVLTNSALDLFKPPKSIRKVDLRGCWLLTDDAISAFSKSFPQIELKHELVHELPYNKLGSYRKSPIQTAKRSQVTPEKGKMPMSSSFVDQRFKYSREELLALKYSSLPLSSSRDKADSIPKMNLTYN 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4153564 4156599 + Conep09aG0087000.1 Cone9ag0850 445013

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0850 593 PANTHER - 4 517 IPR051341 -
Cone9ag0850 593 Gene3D Ribonuclease Inhibitor 397 542 IPR032675 -
Cone9ag0850 593 Pfam Leucine Rich repeat 112 131 IPR001611 GO:0005515(InterPro)
Cone9ag0850 593 Pfam Leucine Rich repeat 301 320 IPR001611 GO:0005515(InterPro)
Cone9ag0850 593 Pfam Leucine Rich repeat 229 242 IPR001611 GO:0005515(InterPro)
Cone9ag0850 593 Gene3D Ribonuclease Inhibitor 9 149 IPR032675 -
Cone9ag0850 593 Gene3D Ribonuclease Inhibitor 151 250 IPR032675 -
Cone9ag0850 593 Gene3D Ribonuclease Inhibitor 270 396 IPR032675 -
Cone9ag0850 593 SUPERFAMILY RNI-like 67 515 - -
Cone9ag0850 593 SMART LRR_CC_2 113 137 IPR006553 -
Cone9ag0850 593 SMART LRR_CC_2 87 112 IPR006553 -
Cone9ag0850 593 SMART LRR_CC_2 480 505 IPR006553 -
Cone9ag0850 593 SMART LRR_CC_2 298 322 IPR006553 -
Cone9ag0850 593 SMART LRR_CC_2 348 372 IPR006553 -
Cone9ag0850 593 SMART LRR_CC_2 161 185 IPR006553 -
Cone9ag0850 593 SMART LRR_CC_2 432 456 IPR006553 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0850 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g130 . . . . . . . Bma14g00633 . . . . . . . . . . . . . . . . Cla07g01424 Cam07g1525 Cec07g1621 Cco07g1581 Clacu07g1513 Cmu07g1483 Cre07g1860 . . . Cone9ag0850 . . . . . . Bda07g00458 . . Bpe11g00635 . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00655 Chy07g01156 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005843 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 7 1 39