Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0866 ATGGAAACCGAAACCCGCCAGAAAATCGAGGAAGCGGTGCGGAAGATTCTAGAAGGTTCGGATATGGAGGACCTGACGGAGTCGAAGATTCGGGAGCAGGCATCCAAAGACCTTGGCCTCGATCTCTCTGAGCCGCCGTACAAGGTGCTGGTGAAGCAGGTCGTAGAGTCCTTTCTAGAAGAAGTAGCTCAACGAGATCAAAATCAACAGCAAGAAGAAGAAGAAGAAGAAGACAATAATGCTGCTAAGGAGTATGACGATGATGGAGATCTCATAATCTGCAGGCTTTCGCAGAAGAGGAGAGTGACGATACAAGATTTCAGGGGGAAAACTCTGGTCTCCATTAGAGAATTCTATAGCAAAGATGGAAAAGATCTTCCCACATCTAAAGGAATAAGCTTGACAGAAGAACAATGGTCTGTATTCAAGAAAAATGTACCTGCTATAGAGAAAGCTATTAAGGAGATGCAATCACAGGCTATGTAA 486 44.65 METETRQKIEEAVRKILEGSDMEDLTESKIREQASKDLGLDLSEPPYKVLVKQVVESFLEEVAQRDQNQQQEEEEEEDNNAAKEYDDDGDLIICRLSQKRRVTIQDFRGKTLVSIREFYSKDGKDLPTSKGISLTEEQWSVFKKNVPAIEKAIKEMQSQAM 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4216267 4217151 + Conep09aG0088700.1 Cone9ag0866 445029

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0866 161 MobiDBLite consensus disorder prediction 62 85 - -
Cone9ag0866 161 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 3 158 IPR045125 GO:0003713(PANTHER)|GO:0003713(InterPro)|GO:0005634(PANTHER)|GO:0005667(PANTHER)|GO:0060261(InterPro)
Cone9ag0866 161 Pfam DEK C terminal domain 5 59 IPR014876 -
Cone9ag0866 161 SUPERFAMILY DEK C-terminal domain 5 59 - -
Cone9ag0866 161 FunFam RNA polymerase II transcriptional coactivator KELP 83 159 - -
Cone9ag0866 161 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 3 60 IPR014876 -
Cone9ag0866 161 PIRSF RNA_polymII_KELP 1 160 IPR017415 -
Cone9ag0866 161 SUPERFAMILY ssDNA-binding transcriptional regulator domain 93 156 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone9ag0866 161 Coils Coil 59 88 - -
Cone9ag0866 161 Gene3D Transcriptional Coactivator Pc4; Chain A 82 160 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone9ag0866 161 Pfam Transcriptional Coactivator p15 (PC4) 94 145 IPR003173 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone9ag0866 161 MobiDBLite consensus disorder prediction 70 84 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0866 K25815 - - csv:101208418 207.608
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0495 Cone-Chr11:2539079 Cone9ag0866 Cone-Chr9:4216267 1.87E-28 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g158 . . Bda06g00157 . . Bpe07g00061 . . Cmo06g01034 Cmo16g00589 . . . . . Cpe14g00452 . . . . . . . . Cla07g01089 Cam07g1409 Cec07g1252 Cco07g1229 Clacu07g1154 Cmu07g1133 Cre07g1513 . . . Cone9ag0866 . . . . . . . . . . . Bma12g00616 . . . Cma06g01014 Cma16g00536 Car06g00852 . . . . . . . . . . . . . . . . . . Csa04g00674 Chy07g01136 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011192 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46841 PF07690 MFS_1 6.20E-33 CL0015 Cone TR