Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone9ag0869 | ATGATGGCTAATCGAGGTTATGGAGGAGAAGATGCTCTTTATACGGAGCTATGGAAAGCTTGTGCAGGCCCACTCGTTGATGTTCCTACTGCAGGGGAGATGGTCTACTACTTTCCTCAGGGACACATGGAACAATTAGAGGCATCAACAAATCAGGTGCTGAATCACAAACTTCCTGATTTTAAGCTTTCTTCCAAGATTCTATGTCGTGTAGCAAACGCTCGGCTGATGGCAGAGCAAGAAACAGATGAAGTTTATGCACAAATAACTTTAATCCCAGAGTCACATAGACCTGAGCCTGCAAGTCATAAGTCATGTGTTTCTGAACCTTCAAGACCAAAAATTCACTCATTTTGTAAGGTCTTGACTGCTTCTGATACTAGTACCCATGGTGGGTTTTCTGTACTCCGTAAGCATGCCACTGAATGCCTTCCTCCCCTGGACATGACCCAGCCAACTCCAACACAAGAACTGGTAGCCAAGGATCTTCATGGTTATGAATGGCGATTCAAACATATTTTCAGAGGTCAACCACGGAGGCACTTGCTAACAACTGGATGGAGCACATTTGTTTCTTCTAAGAGATTGCTCGCAGGGGATTCTTTCATATTCTTGAGGGGAGAAAACGGGGATTTACATGTTGGAGTGAGACGTCAAGCTCGTCAACAGAGCAGTATGCCTTCATCTGTAATTTCAAGTCAAAGCATGCACCTAGGAGTGCTCGCTACTGCATCGCATGCTGTTTCAACCCAAACAATGTTTGTAGTTTATTATAAGCCAAGGACAAGCCGATTTATCATAAGCTTGAAGAAATACTCGGAAGCTGTGAACAATAAGTTTTCTGTCGGTTCAAAATTCAAAATGAGGTTTGAAGGGGATGATTCTCCAGAAAGGAGTTTTTCTGGCACTATTGTTGGGGTTGAAGATATGTCTTCTAACTGGGCTGATTCAAAATGGCGATCTTTGAAAGTTCAATGGGATGAACCAGCCTCTATTTCAAGACCTGATAGGATTTCACCTTGGGAGATAGAACCCTTTGTGCCTTCTTCTGCCCCTAACTTAGGTCAACCAGTTTTGGTAAAGAGCAAAAGGCCTCGGCAACCCTTTGAAAATCCCCCCCTTGATTCTAGTAATTCAACTCCATCACCTCTCTGGCACTCTGTATTGACTCAACCTCATGATAGACCACAACTGAGCAATGTTACAGCTGAAAGCAAAAGAAATGGAAATCATAGCCTGTGGCATCATATGCAGACAGATAACTCCATGAACAGAAACTCTTTTTCAAGGAATCAAAACGATGGGTCCTGGTTATCATCACCGTCCCCCCATGCAAATGGTACTCAGCATCTTTTTCAAGATATGACTGAAGAGAATAAAAGTGTTCCCACATGGTCTGCGTCTGCTTTTTCAGCATATTCAACCACACAATCATCAAAACCGAACAATGAACCAATCATGATTCCTGACCCCGTGGAAAAAGGGAAGAAAACTGAGATGGCTACTAGTTGTAGATTGTTTGGTATTGAGCTGATAACTAATCCTCCGCCTATCCCTACTCCTGAAAAGGCCTGTGCTCAACCAATACATGTGTCTAGTGACACCAGTCAAAGCAAGCAAAGTTGCTCTACCAATGCCAGAAGCCGCACTAAGGTACAAATGCAGGGGATAGCTGTGGGTCGAGCTGTAGACCTAACAATGTTGGAAGGGTATGATCAGCTTATAGATGAACTGGAGAAGTTGTTTGATATCAAGGGACAGCTTCGACCACGTGACAAGTGGGACATTGTATTTACTGATGATGAAGGGGACACAATGCTCATGGGAGATTATCCTTGGCATGAATTCTGTGATGTGGTTAGAAGAATATTTATAAGTTTGAGCCGCCATGATATGAAGAAGATGAGTTCAGTGCCCATGTCTTCTATAGAAGGTGAATTCACTGGAAAAAGCGCAGAGCATGCTGAAATTTGA | 1974 | 43.21 | MMANRGYGGEDALYTELWKACAGPLVDVPTAGEMVYYFPQGHMEQLEASTNQVLNHKLPDFKLSSKILCRVANARLMAEQETDEVYAQITLIPESHRPEPASHKSCVSEPSRPKIHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMTQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVSSKRLLAGDSFIFLRGENGDLHVGVRRQARQQSSMPSSVISSQSMHLGVLATASHAVSTQTMFVVYYKPRTSRFIISLKKYSEAVNNKFSVGSKFKMRFEGDDSPERSFSGTIVGVEDMSSNWADSKWRSLKVQWDEPASISRPDRISPWEIEPFVPSSAPNLGQPVLVKSKRPRQPFENPPLDSSNSTPSPLWHSVLTQPHDRPQLSNVTAESKRNGNHSLWHHMQTDNSMNRNSFSRNQNDGSWLSSPSPHANGTQHLFQDMTEENKSVPTWSASAFSAYSTTQSSKPNNEPIMIPDPVEKGKKTEMATSCRLFGIELITNPPPIPTPEKACAQPIHVSSDTSQSKQSCSTNARSRTKVQMQGIAVGRAVDLTMLEGYDQLIDELEKLFDIKGQLRPRDKWDIVFTDDEGDTMLMGDYPWHEFCDVVRRIFISLSRHDMKKMSSVPMSSIEGEFTGKSAEHAEI | 657 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 4229505 | 4233448 | + | Conep09aG0089000.1 | Cone9ag0869 | 445032 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone9ag0869 | 657 | SUPERFAMILY | CAD & PB1 domains | 544 | 623 | - | - | |
Cone9ag0869 | 657 | MobiDBLite | consensus disorder prediction | 364 | 449 | - | - | |
Cone9ag0869 | 657 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 12 | 636 | IPR044835 | GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro) | |
Cone9ag0869 | 657 | FunFam | Auxin response factor | 116 | 220 | - | - | |
Cone9ag0869 | 657 | CDD | B3_DNA | 116 | 218 | IPR003340 | GO:0003677(InterPro) | |
Cone9ag0869 | 657 | FunFam | Auxin response factor | 279 | 350 | - | - | |
Cone9ag0869 | 657 | MobiDBLite | consensus disorder prediction | 371 | 449 | - | - | |
Cone9ag0869 | 657 | Gene3D | - | 279 | 351 | - | - | |
Cone9ag0869 | 657 | Pfam | Auxin response factor | 244 | 323 | IPR010525 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro) | |
Cone9ag0869 | 657 | Gene3D | - | 115 | 220 | IPR015300 | - | |
Cone9ag0869 | 657 | ProSiteProfiles | PB1 domain profile. | 547 | 628 | IPR053793 | - | |
Cone9ag0869 | 657 | Pfam | AUX/IAA family | 594 | 625 | IPR033389 | - | |
Cone9ag0869 | 657 | Pfam | AUX/IAA family | 516 | 583 | IPR033389 | - | |
Cone9ag0869 | 657 | Pfam | B3 DNA binding domain | 118 | 219 | IPR003340 | GO:0003677(InterPro) | |
Cone9ag0869 | 657 | SUPERFAMILY | DNA-binding pseudobarrel domain | 106 | 247 | IPR015300 | - | |
Cone9ag0869 | 657 | ProSiteProfiles | B3 DNA-binding domain profile. | 118 | 220 | IPR003340 | GO:0003677(InterPro) | |
Cone9ag0869 | 657 | Gene3D | - | 542 | 636 | - | - | |
Cone9ag0869 | 657 | SMART | B3_2 | 118 | 220 | IPR003340 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone19ag0688 | Cone-Chr19:5790271 | Cone9ag0869 | Cone-Chr9:4229505 | 5.59E-196 | dispersed | |
Cone4ag0660 | Cone-Chr4:3207618 | Cone9ag0869 | Cone-Chr9:4229505 | 1.00E-07 | dispersed | |
Cone9ag0298 | Cone-Chr9:1285154 | Cone9ag0869 | Cone-Chr9:4229505 | 5.63E-109 | dispersed | |
Cone9ag0869 | Cone-Chr9:4229505 | Cone9ag0989 | Cone-Chr9:5080316 | 4.66E-99 | dispersed | |
Cone14ag0428 | Cone-Chr14:2007796 | Cone9ag0869 | Cone-Chr9:4229505 | 6.87E-230 | wgd | |
Cone15ag0465 | Cone-Chr15:2208844 | Cone9ag0869 | Cone-Chr9:4229505 | 2.30E-222 | wgd | |
Cone5ag1564 | Cone-Chr5:10893332 | Cone9ag0869 | Cone-Chr9:4229505 | 2.14E-107 | wgd | |
Cone6ag0864 | Cone-Chr6:4412479 | Cone9ag0869 | Cone-Chr9:4229505 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
46842 | PF01494 | FAD_binding_3 | 1.90E-23 | CL0063 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone9ag0869 | K14486 | - | rcu:8286247 | 884.789 |