Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0869 ATGATGGCTAATCGAGGTTATGGAGGAGAAGATGCTCTTTATACGGAGCTATGGAAAGCTTGTGCAGGCCCACTCGTTGATGTTCCTACTGCAGGGGAGATGGTCTACTACTTTCCTCAGGGACACATGGAACAATTAGAGGCATCAACAAATCAGGTGCTGAATCACAAACTTCCTGATTTTAAGCTTTCTTCCAAGATTCTATGTCGTGTAGCAAACGCTCGGCTGATGGCAGAGCAAGAAACAGATGAAGTTTATGCACAAATAACTTTAATCCCAGAGTCACATAGACCTGAGCCTGCAAGTCATAAGTCATGTGTTTCTGAACCTTCAAGACCAAAAATTCACTCATTTTGTAAGGTCTTGACTGCTTCTGATACTAGTACCCATGGTGGGTTTTCTGTACTCCGTAAGCATGCCACTGAATGCCTTCCTCCCCTGGACATGACCCAGCCAACTCCAACACAAGAACTGGTAGCCAAGGATCTTCATGGTTATGAATGGCGATTCAAACATATTTTCAGAGGTCAACCACGGAGGCACTTGCTAACAACTGGATGGAGCACATTTGTTTCTTCTAAGAGATTGCTCGCAGGGGATTCTTTCATATTCTTGAGGGGAGAAAACGGGGATTTACATGTTGGAGTGAGACGTCAAGCTCGTCAACAGAGCAGTATGCCTTCATCTGTAATTTCAAGTCAAAGCATGCACCTAGGAGTGCTCGCTACTGCATCGCATGCTGTTTCAACCCAAACAATGTTTGTAGTTTATTATAAGCCAAGGACAAGCCGATTTATCATAAGCTTGAAGAAATACTCGGAAGCTGTGAACAATAAGTTTTCTGTCGGTTCAAAATTCAAAATGAGGTTTGAAGGGGATGATTCTCCAGAAAGGAGTTTTTCTGGCACTATTGTTGGGGTTGAAGATATGTCTTCTAACTGGGCTGATTCAAAATGGCGATCTTTGAAAGTTCAATGGGATGAACCAGCCTCTATTTCAAGACCTGATAGGATTTCACCTTGGGAGATAGAACCCTTTGTGCCTTCTTCTGCCCCTAACTTAGGTCAACCAGTTTTGGTAAAGAGCAAAAGGCCTCGGCAACCCTTTGAAAATCCCCCCCTTGATTCTAGTAATTCAACTCCATCACCTCTCTGGCACTCTGTATTGACTCAACCTCATGATAGACCACAACTGAGCAATGTTACAGCTGAAAGCAAAAGAAATGGAAATCATAGCCTGTGGCATCATATGCAGACAGATAACTCCATGAACAGAAACTCTTTTTCAAGGAATCAAAACGATGGGTCCTGGTTATCATCACCGTCCCCCCATGCAAATGGTACTCAGCATCTTTTTCAAGATATGACTGAAGAGAATAAAAGTGTTCCCACATGGTCTGCGTCTGCTTTTTCAGCATATTCAACCACACAATCATCAAAACCGAACAATGAACCAATCATGATTCCTGACCCCGTGGAAAAAGGGAAGAAAACTGAGATGGCTACTAGTTGTAGATTGTTTGGTATTGAGCTGATAACTAATCCTCCGCCTATCCCTACTCCTGAAAAGGCCTGTGCTCAACCAATACATGTGTCTAGTGACACCAGTCAAAGCAAGCAAAGTTGCTCTACCAATGCCAGAAGCCGCACTAAGGTACAAATGCAGGGGATAGCTGTGGGTCGAGCTGTAGACCTAACAATGTTGGAAGGGTATGATCAGCTTATAGATGAACTGGAGAAGTTGTTTGATATCAAGGGACAGCTTCGACCACGTGACAAGTGGGACATTGTATTTACTGATGATGAAGGGGACACAATGCTCATGGGAGATTATCCTTGGCATGAATTCTGTGATGTGGTTAGAAGAATATTTATAAGTTTGAGCCGCCATGATATGAAGAAGATGAGTTCAGTGCCCATGTCTTCTATAGAAGGTGAATTCACTGGAAAAAGCGCAGAGCATGCTGAAATTTGA 1974 43.21 MMANRGYGGEDALYTELWKACAGPLVDVPTAGEMVYYFPQGHMEQLEASTNQVLNHKLPDFKLSSKILCRVANARLMAEQETDEVYAQITLIPESHRPEPASHKSCVSEPSRPKIHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMTQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVSSKRLLAGDSFIFLRGENGDLHVGVRRQARQQSSMPSSVISSQSMHLGVLATASHAVSTQTMFVVYYKPRTSRFIISLKKYSEAVNNKFSVGSKFKMRFEGDDSPERSFSGTIVGVEDMSSNWADSKWRSLKVQWDEPASISRPDRISPWEIEPFVPSSAPNLGQPVLVKSKRPRQPFENPPLDSSNSTPSPLWHSVLTQPHDRPQLSNVTAESKRNGNHSLWHHMQTDNSMNRNSFSRNQNDGSWLSSPSPHANGTQHLFQDMTEENKSVPTWSASAFSAYSTTQSSKPNNEPIMIPDPVEKGKKTEMATSCRLFGIELITNPPPIPTPEKACAQPIHVSSDTSQSKQSCSTNARSRTKVQMQGIAVGRAVDLTMLEGYDQLIDELEKLFDIKGQLRPRDKWDIVFTDDEGDTMLMGDYPWHEFCDVVRRIFISLSRHDMKKMSSVPMSSIEGEFTGKSAEHAEI 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4229505 4233448 + Conep09aG0089000.1 Cone9ag0869 445032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0869 657 SUPERFAMILY CAD & PB1 domains 544 623 - -
Cone9ag0869 657 MobiDBLite consensus disorder prediction 364 449 - -
Cone9ag0869 657 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 12 636 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone9ag0869 657 FunFam Auxin response factor 116 220 - -
Cone9ag0869 657 CDD B3_DNA 116 218 IPR003340 GO:0003677(InterPro)
Cone9ag0869 657 FunFam Auxin response factor 279 350 - -
Cone9ag0869 657 MobiDBLite consensus disorder prediction 371 449 - -
Cone9ag0869 657 Gene3D - 279 351 - -
Cone9ag0869 657 Pfam Auxin response factor 244 323 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone9ag0869 657 Gene3D - 115 220 IPR015300 -
Cone9ag0869 657 ProSiteProfiles PB1 domain profile. 547 628 IPR053793 -
Cone9ag0869 657 Pfam AUX/IAA family 594 625 IPR033389 -
Cone9ag0869 657 Pfam AUX/IAA family 516 583 IPR033389 -
Cone9ag0869 657 Pfam B3 DNA binding domain 118 219 IPR003340 GO:0003677(InterPro)
Cone9ag0869 657 SUPERFAMILY DNA-binding pseudobarrel domain 106 247 IPR015300 -
Cone9ag0869 657 ProSiteProfiles B3 DNA-binding domain profile. 118 220 IPR003340 GO:0003677(InterPro)
Cone9ag0869 657 Gene3D - 542 636 - -
Cone9ag0869 657 SMART B3_2 118 220 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0688 Cone-Chr19:5790271 Cone9ag0869 Cone-Chr9:4229505 5.59E-196 dispersed
Cone4ag0660 Cone-Chr4:3207618 Cone9ag0869 Cone-Chr9:4229505 1.00E-07 dispersed
Cone9ag0298 Cone-Chr9:1285154 Cone9ag0869 Cone-Chr9:4229505 5.63E-109 dispersed
Cone9ag0869 Cone-Chr9:4229505 Cone9ag0989 Cone-Chr9:5080316 4.66E-99 dispersed
Cone14ag0428 Cone-Chr14:2007796 Cone9ag0869 Cone-Chr9:4229505 6.87E-230 wgd
Cone15ag0465 Cone-Chr15:2208844 Cone9ag0869 Cone-Chr9:4229505 2.30E-222 wgd
Cone5ag1564 Cone-Chr5:10893332 Cone9ag0869 Cone-Chr9:4229505 2.14E-107 wgd
Cone6ag0864 Cone-Chr6:4412479 Cone9ag0869 Cone-Chr9:4229505 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46842 PF01494 FAD_binding_3 1.90E-23 CL0063 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0869 K14486 - rcu:8286247 884.789