Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0876 ATGCCAGACCCAGAGGTGGAAAACAGATCAGAATTCTATCCCAAACAGAAGGACAAATTTCTATTACCAGCATGTGTAGAAGAAAGAGATGATACACTCATGGACTTCGATCTGGACCAGGATTCTTCCTGGCCGCTGTATCAGTTCACGTCCTTAATCTCTAACCCTACTTCTCCCATTCTTATCTGCGCTTCTGACCAGCCCTGCACTCCTCTCTGGGCATCTATCGATGGAGACAACGATGAAAACAGCAAGCTTCCTGACCAGGCCAACTCAGTCCCAAGTACTAGCAATTCCTGTTTAAACCGTGAAAGCAGGATTCATCAATCCCATCTGTTTGTACCAAAACCTATAGATAGTCCAGATGGGTATTGTTTAATGAAAGAGAGAATGACACAAGCTCTTCGATTCTTCAAAGAATCAACAGAGCAACATATTCTAGCTCAGGTGTGGGCCCCTGTCAAAACAGGCGGTCAATATGTCCTTACAACTTCAGGCCAACCTTTTGTTCTTGATCCGCAAAGTATTGGACTTCACCAATACAGGATGGTCTCTCTTATGTACGTGTTTTCTCTTGACAGTGAGAAAGATGAAGTTTTAGGCCTTCCTGGCCGTGTTTTCCGCCAGAAATTGCCAGAATGGACTCCTAATGTTCAATACTACTCCAGCAGAGAGTATCCACGCCTTACTCATGCTCTTCATTATAATGTTCAGGGCAGCTTAGCTCTGCCCATATTTGAATCTTCTGGGCAGACCTGTGTTGGCGTGATTGAGCTTATTACAACTGCTCCTAAGATCAATTATGCACCTGAGGTTGAGATAATCTGCAAAGCCCTTGAGGCTGTAAATCTTAAAAGTTCGGAAATTTTGGATCACCCAAATATACAGATATGCAATGAAGGTCGCCAAAATGCTTTAGGAGAAATCTTGGAAGTGCTTAGTGCTGTATGTGAAATGCACAAGTTGCCGTTGGCTCAAACCTGGGTTCCATGCAAGCATAGAAGTGTTCTAGCCTATAATGGTGGGTTCAGGAAAAGCTGTACTAGCTTTGATGGAAGTTGTAATGGGAAGGTATGTATGTCCACAACTGATGTAGCGTTCTACGTAATTGATGCTCACATGTGGGGTTTTCGAGGAGCGTGTCTAGAACATCATTTACAAAAAGGTCAAGGAGTTTCCGGAAGGGCATTTCTGTCCCAAAGCTTGTCTTTTTGTAGCAACATAACTCGTTTCTGCAAGAAGGAGTATCCTTTAGCTCATTATGCGCTTATGTTTGGTTTGAAAAGCTGTTTTGCAATCTGTTTAAAGAGTAGTTTTACTGGAGATGATGAATATGTCTTAGAATTTTTTCTGCCATCTAGCATTGTAGAGGATATTGAGCAGAAAATTTTCTTGGGGTCTTTACTTGGTACGATGAAGCAGCATTTCCGTACTCTAAAGGTTGCTTCGGGGATTGAGTTTGAAGAGGATAAGGTATTTGTTGAAATCATTCAAGGTTCTGAAAACGATGGGCTTGATTTTCGATTTGAATGTATTCAAATTCCTCAATCCATTGAGTTGCCACCTGAGTCTACTGACCTTGTACAAAAGGCAGCAGATTTGGTTCTAGATGCAGGAGATTCATTTGAAAAATGGGTACTAAATGATGGAAGCAAACCCATTCATGAGGGTGAAATCCAAAATCCTGTTCCTTTTCCTCCACAAATTAGAGATACTAATAAAAAGCCAGTTGAGAGAAAACGTGGAAAAACCGAGAAATCAATTAATCTTGAGGTTTTACAGCAATATTTTGCTGGGAGTCTTAAAGATGCCGCTAGAAGCCTTGGTGTTTGCCCCACTACAATGAAGCGGATATGTAGACAGCATGGAATCTCACGCTGGCCATCTCGGAAGATCAATAAAGTCAACCGTTCCCTTTCTAAGCTCAAACGGGTGATTGAATCTGTTCAAGTGGCTGAAGGAACATTTGGTTTGAACTCTTTGACTAAAAACACAAATCCTTCTAATGCCAAAAATGGGTCTGAGCCTGAAGCCCAGATCGAGAATAAGGAATCACCCGCCTCAACAACTCCACAAAACGAAGTACAGGTAGAAATGGAAGATCATCACGATCTACCTAGAGAAGGCGGGCCATCTAGTTCTAGCCCAGAAGAACCAATTCACGAACAAAATTCCAAAACGGGTTCTGGCTCAAGGGAGGAAGAAGGGAGTGCTCTGGCCCCCACATCTAATGGGTCTTGCCAAGGTAGTCCCACATATGAAATGCCTCGAGCCGTCATTCCTGATAATATTCTCTTGACGGGCAAAAATGATGAACCCTTTCGAGGAATGCTGGTAGAAGAGCCCTTTGGAGGAATGTTGGTTGAAGATTCCGGGAGTTCTAAAGACTTAAAGAACCTTTGTCCACCTGGTGGCATGGATTCCATTCTGGACGAGCAAGTCCTTACCAACAACCATTCCACCATGGATGTTCTTCCTCAGACAATGTCGACTCTTGTAGGAGGTGGAGATATGGGGAGGTTCACTATAAAGGCTACTTACAAGGAAGATATGATCATTAGGTTTAGGATTCCGTCAGGTTCTGGGATTATGGATTTAAAAGAGGAGGTAGCAAAGAGGTTGAAATTGGAGGTGGATACTTTTGATATCAAATACATAGATGATGATAATGAATGGGTTTTGATAGCATGTGATGCAGACCTACAGGAATGCGTGGAGATTTCGAAATCTTCAGGGAGCAATATTATAAGGCTTCTGGTTAATGATATCATTCCCAGTCTGGGCAGTTCAGGTGAGAGCAGCTGGCAATGA 2811 42.65 MPDPEVENRSEFYPKQKDKFLLPACVEERDDTLMDFDLDQDSSWPLYQFTSLISNPTSPILICASDQPCTPLWASIDGDNDENSKLPDQANSVPSTSNSCLNRESRIHQSHLFVPKPIDSPDGYCLMKERMTQALRFFKESTEQHILAQVWAPVKTGGQYVLTTSGQPFVLDPQSIGLHQYRMVSLMYVFSLDSEKDEVLGLPGRVFRQKLPEWTPNVQYYSSREYPRLTHALHYNVQGSLALPIFESSGQTCVGVIELITTAPKINYAPEVEIICKALEAVNLKSSEILDHPNIQICNEGRQNALGEILEVLSAVCEMHKLPLAQTWVPCKHRSVLAYNGGFRKSCTSFDGSCNGKVCMSTTDVAFYVIDAHMWGFRGACLEHHLQKGQGVSGRAFLSQSLSFCSNITRFCKKEYPLAHYALMFGLKSCFAICLKSSFTGDDEYVLEFFLPSSIVEDIEQKIFLGSLLGTMKQHFRTLKVASGIEFEEDKVFVEIIQGSENDGLDFRFECIQIPQSIELPPESTDLVQKAADLVLDAGDSFEKWVLNDGSKPIHEGEIQNPVPFPPQIRDTNKKPVERKRGKTEKSINLEVLQQYFAGSLKDAARSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQVAEGTFGLNSLTKNTNPSNAKNGSEPEAQIENKESPASTTPQNEVQVEMEDHHDLPREGGPSSSSPEEPIHEQNSKTGSGSREEEGSALAPTSNGSCQGSPTYEMPRAVIPDNILLTGKNDEPFRGMLVEEPFGGMLVEDSGSSKDLKNLCPPGGMDSILDEQVLTNNHSTMDVLPQTMSTLVGGGDMGRFTIKATYKEDMIIRFRIPSGSGIMDLKEEVAKRLKLEVDTFDIKYIDDDNEWVLIACDADLQECVEISKSSGSNIIRLLVNDIIPSLGSSGESSWQ 936
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4266120 4269679 + Conep09aG0089800.1 Cone9ag0876 445039

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0876 936 MobiDBLite consensus disorder prediction 658 755 - -
Cone9ag0876 936 Gene3D - 839 926 - -
Cone9ag0876 936 MobiDBLite consensus disorder prediction 85 100 - -
Cone9ag0876 936 ProSiteProfiles PB1 domain profile. 840 923 IPR053793 -
Cone9ag0876 936 PANTHER PROTEIN NLP8 66 934 IPR045012 GO:0003700(InterPro)
Cone9ag0876 936 MobiDBLite consensus disorder prediction 716 751 - -
Cone9ag0876 936 MobiDBLite consensus disorder prediction 556 583 - -
Cone9ag0876 936 MobiDBLite consensus disorder prediction 74 100 - -
Cone9ag0876 936 SMART PB1_new 840 923 IPR000270 GO:0005515(InterPro)
Cone9ag0876 936 Pfam NLP protein GAF domain 296 479 IPR055081 -
Cone9ag0876 936 ProSiteProfiles RWP-RK domain profile. 574 655 IPR003035 -
Cone9ag0876 936 SUPERFAMILY CAD & PB1 domains 838 927 - -
Cone9ag0876 936 CDD PB1_NLP 841 922 IPR034891 -
Cone9ag0876 936 Pfam RWP-RK domain 587 634 IPR003035 -
Cone9ag0876 936 MobiDBLite consensus disorder prediction 658 695 - -
Cone9ag0876 936 Pfam PB1 domain 841 922 IPR000270 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0876 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0645 Cone-Chr11:4281071 Cone9ag0876 Cone-Chr9:4266120 2.37E-139 dispersed
Cone18ag0864 Cone-Chr18:5955332 Cone9ag0876 Cone-Chr9:4266120 1.10E-134 dispersed
Cone20ag0023 Cone-Chr20:143717 Cone9ag0876 Cone-Chr9:4266120 7.10E-72 dispersed
Cone4ag2020 Cone-Chr4:14057012 Cone9ag0876 Cone-Chr9:4266120 8.16E-129 dispersed
Cone7ag1936 Cone-Chr7:12353709 Cone9ag0876 Cone-Chr9:4266120 3.90E-135 dispersed
Cone8ag1327 Cone-Chr8:10741156 Cone9ag0876 Cone-Chr9:4266120 3.12E-96 dispersed
Cone6ag0870 Cone-Chr6:4444310 Cone9ag0876 Cone-Chr9:4266120 3.42E-200 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone9ag0876 . 182 934 NLP Transcription Factor Family AT1G64530 52.2 5.0e-207 718.4
Cone9ag0876 . 262 936 NLP Transcription Factor Family AT4G24020 50.4 1.4e-180 630.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003291 3 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 2 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46843 None None None None Cone TF