Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0880 ATGGTCATCTGTCTAGTGAAATGGCGAGGGCCGTGGGTGCTGCATAATATTTTACTGCTTTGTATAATAATAAACAAAGGCAGTAGTAGTCTTAGCTCTGATGGTGAGGCACTTCTAAGCTTTAGAACATCAGTTATTAGTTCCGATGGTGTCCTCCTGAAGTGGAGACCGGAAGATCACGCCCCATGTGGTTGGAAAGGAGTGACATGTGATCCAAAGACCAAGAGAGTAATATATTTGAGTCTTCCACATCATAAACTGAGTGGATCTCTATCACCTGATCTGGGAAAGCTAGAGCAATTGAAGATTTTAGCTCTTCATAATAACAATTTCTATGGAACAATCCCGTCAGAGCTGGGAAATTGCTTGCAGTTGCAGGGAATATTCTTTCAGGGTAATTACTTAAGTGGATCAATACCTGATGAATTGGGAAATCTTTCACAGCTCCAGAATTTAGATATCTCAAGCAATTCTCTTGGTGGAAATATCCCCTTGTCCTTGGGAAAGTTGAAAAAGCTTGTTACTCTCAATGTGTCAAACAATTTTCTGGTTGGACCACTACCTTTGGATGGTGTGCTTATCAACATTTCAGAAAACTCATTTGTTGGGAACCGTGGCTTGTGCGGGAAACAAATCAGTGTGGCATGTAAAACTGATGGTGGAGGCACTGGAACAAACTCTCAACATACAATCTCAGGTGAATTTCCAGGTGGAAGGAAGAAGTACTCTGGCCGTCTTCTTATCAGTGCATCAGCAACTGTTGGTGCACTCCTTCTGGTGGCACTAATATGTTTTTGGGGTTGCTCTCTCTATAAGAAGTTTGGTAAAACTGAGAGTAAAGGGCTTGCAATGGATGTTTGTGGAGGCGCATCAATTGTAATGTTTCATGGAGATTTGCCATACTCTTCAAAAGACATTATTAAGAAATTGGAAGCCTTAAATGAGGAGCATGTTATAGGTTGTGGGGGCTTTGGCAAAGTTTACAAGCTCAAAATGGATGATGGCAATGTCTTTGCTTTAAAGAGGATCGTCAAGATGAATGAGAAATTTGATCGGTTTTTCGAGAGGGAACTGGAAATTCTCGGAAGCATAAAACATCGGCATTTAGTAAATTTGCGAGGATATTGCAATTCTCCTACATCAAAACTGTTAATTTATGATTTCTTACTTGGTGGTAGCCTTGACGAGGTCCTTCATGAGAGATCCGAGCAACTAGACTGGGATGCACGGTTGAACATTATCATGGGTGCAGCAAAAGGCTTGGCCTACTTACACCATGATTGCTCACCCAGGATCATACATAGAGACATAAAATCAAGCAACATTCTACTCGATGGAAATTTGGAGGCTCGAGTTTCTGACTTTGGGCTTGCCAAACTTTTGGAGGATGAAGAGTCTCACATTACAACCATTGTTGCTGGAACATTTGGTTATCTTGCTCCTGAGTATATGCAAAGTGGTAGAGCCACTGAAAAGACTGATGTGTACAGTTTCGGGGTTTTAGTGCTTGAAGTTTTAAATGGAAAGAGACCCACTGATGCATCATTCATTGAGAAGGGCCTTAACATTGTTGGCTGGTTAAATTTTCTTGTCACGGAGAATATGCAAAGAGAAATTGTTGATCCACAGTGCAACGGGGTGCAACTAGAAAGCCTTGATGCCTTGCTCTCTATTGCTACTCGATGCGTTTCATCAAATCCAGAGGATCGGCCCACCATGCACAAGGTAGTCCAGATTCTTGAATCTGAGGTTATGACCCCTTGTCCAAGCGACTTCTATGATTCACACTCCGATTAA 1797 41.79 MVICLVKWRGPWVLHNILLLCIIINKGSSSLSSDGEALLSFRTSVISSDGVLLKWRPEDHAPCGWKGVTCDPKTKRVIYLSLPHHKLSGSLSPDLGKLEQLKILALHNNNFYGTIPSELGNCLQLQGIFFQGNYLSGSIPDELGNLSQLQNLDISSNSLGGNIPLSLGKLKKLVTLNVSNNFLVGPLPLDGVLINISENSFVGNRGLCGKQISVACKTDGGGTGTNSQHTISGEFPGGRKKYSGRLLISASATVGALLLVALICFWGCSLYKKFGKTESKGLAMDVCGGASIVMFHGDLPYSSKDIIKKLEALNEEHVIGCGGFGKVYKLKMDDGNVFALKRIVKMNEKFDRFFERELEILGSIKHRHLVNLRGYCNSPTSKLLIYDFLLGGSLDEVLHERSEQLDWDARLNIIMGAAKGLAYLHHDCSPRIIHRDIKSSNILLDGNLEARVSDFGLAKLLEDEESHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLNGKRPTDASFIEKGLNIVGWLNFLVTENMQREIVDPQCNGVQLESLDALLSIATRCVSSNPEDRPTMHKVVQILESEVMTPCPSDFYDSHSD 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4293527 4298372 + Conep09aG0090200.1 Cone9ag0880 445043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0880 598 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 389 591 - -
Cone9ag0880 598 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 73 204 IPR051564 GO:0016020(PANTHER)
Cone9ag0880 598 SMART serkin_6 313 585 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag0880 598 FunFam LRR receptor-like serine/threonine-protein kinase FEI 1 287 388 - -
Cone9ag0880 598 SUPERFAMILY Protein kinase-like (PK-like) 299 580 IPR011009 -
Cone9ag0880 598 ProSiteProfiles Protein kinase domain profile. 313 585 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag0880 598 ProSitePatterns Serine/Threonine protein kinases active-site signature. 432 444 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone9ag0880 598 Gene3D Transferase(Phosphotransferase) domain 1 390 587 - -
Cone9ag0880 598 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 31 193 - -
Cone9ag0880 598 ProSitePatterns Protein kinases ATP-binding region signature. 319 345 IPR017441 GO:0005524(InterPro)
Cone9ag0880 598 SUPERFAMILY L domain-like 31 203 - -
Cone9ag0880 598 Gene3D Ribonuclease Inhibitor 31 217 IPR032675 -
Cone9ag0880 598 Pfam Protein kinase domain 315 578 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag0880 598 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Cone9ag0880 598 Gene3D Phosphorylase Kinase; domain 1 290 388 - -
Cone9ag0880 598 Pfam Leucine Rich Repeat 148 170 IPR001611 GO:0005515(InterPro)
Cone9ag0880 598 Pfam Leucine Rich Repeat 100 122 IPR001611 GO:0005515(InterPro)
Cone9ag0880 598 Pfam Leucine Rich Repeat 125 146 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0089 Cone-Chr13:556162 Cone9ag0880 Cone-Chr9:4293527 2.14E-141 dispersed
Cone19ag0092 Cone-Chr19:526011 Cone9ag0880 Cone-Chr9:4293527 5.75E-157 dispersed
Cone4ag1700 Cone-Chr4:12643837 Cone9ag0880 Cone-Chr9:4293527 3.71E-70 dispersed
Cone7ag1617 Cone-Chr7:10987657 Cone9ag0880 Cone-Chr9:4293527 5.05E-70 dispersed
Cone9ag0327 Cone-Chr9:1427234 Cone9ag0880 Cone-Chr9:4293527 6.60E-281 dispersed
Cone9ag0880 Cone-Chr9:4293527 Cone9ag1418 Cone-Chr9:10516382 1.14E-70 dispersed
Cone6ag0874 Cone-Chr6:4465526 Cone9ag0880 Cone-Chr9:4293527 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83177 PF00847 AP2 1.70E-15 CL0081 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0880 - - - 0.0