Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0881 ATGACCTATGGTGGTACATTCAACCCAGTAGGATCCGGAATTGTCGGATCTGGAGTACCGAATAACGGTCTGAGTACAATAAGTTTCGGAAGTGATGCTGTCATTTATGGGCTCTGTATGGTCAAAACTCCGCTCATTATGAAAGATCCGGCTACATACTACTATGTGACACTGAATTCCTTTAGTGTTAATGGAGGGAAGATGCTGACATGGAACAATGACACGTCCAGAAATAGTTCGGGGAATATTATTGTTGATTCCTGGACGACATATACTCTGTTACCTCCCGTGATTATGGATCAGTTGGTGTTGGCTGTGAAGGCTCCTGTGAAGGGTAAGAATATTGTTCTGGATCCGATCCGAATGGTTATTCTTCTGCTCTGTTTTGAAGGAGGGAGTGATGCAGATTTTCCGACAATGACGGCTCATTTTGACGGTGCGGACGTGGTGTTACCACCTATTAATATGTTTTCTAGGGTTGGTCCTAATGTGGTGTGTTTGGCTAGTGTTTACACAACTGATGTTGCCGTGTGGGGGAGAATATTGCTCAGCGACATAAATACTCTCCCTCGTCCAGTAACTTCAGTTACATCACACAGTGTACAAGAACAACTACAACACCCCCTTGTGGTTGGTTTTGACCATGAGACTAAAACGGCAGTGCTTAAACAATTATGGCGCTTTGGTAACGAAGGCCTGTCGATAGATGAGACCGAGCTTCAGTGTTACCACCAACTTCAAAGTCTATACAATTCAACCAGGACAGCTAAGCATTTCCAGAGGCATATTGTCCGTGGTGTTGAAGGTTTCGCTTCATTAAGTTCAAAGCAAATGGAGATTGTAAGAAGATTAGCCGATGATTGTTGCAAATACGGAGTCGACAATCAAACAACTGGCTCTCCCCTTTCAAAAGCTACTCTTCACTTTGGAAACTCGCATAACTCAATGGAAAAGGAAAGTGAGACTCTGTTACGGATCTTAGGTGATCAGGTTACTGAGCCACTAAGAGCACAAATAAACGGAGCACCTTTGGAGGATGCTCGGCATTTGACTCGACGTTATGAGAAGCTCCGTCAAGAGGTGGAATCACAGGCAGGTGAAGTGTTGAAACGGCGGTCTAAATCTAAGGATTCTGCTGCTATTTCTACTGAGAGTTCTATGAGGCTTCAAAGTGCTGAGGCGAGGTTGAGTGAGCTTAAATCGACAGTGGTGGCACTTGGGAAAGAAGCATCTGCTGCTATGCTTTCGGTTGAGGATCAGCAGCAACAGATGACTTTCCAGAAGCTTCTTATCATGGTCAATGCTGAGAGATCGTATCATCAAAGTGTTCTTGGTATTTTGGAGAAGCTGAATGAGGAGATGGTTCTTGATGAGCAGGCCAATGGAGCACGGCTTACCTCAATAAGTGGCCAGAGAGATACACATGCTGATACTCCTCACGAGGATTCCAAGCGAAGTGCATCTGATGCCGATTTGGATGAAAATAGCACATTCTTCCTTTCAAAAGTCGTTCACCCATTTGATGCTCAAGCAGATGGTGAGTTGAGTCTTTCAGTTGATGATTATGTCGTGATTCGTCAGGTGGGTTCGAATGGATGGGATGGTCAGAAGGAGAATGCGAGGGAAAAGCAGGATGGTTTCCCTCTGCCTATATAG 1656 44.75 MTYGGTFNPVGSGIVGSGVPNNGLSTISFGSDAVIYGLCMVKTPLIMKDPATYYYVTLNSFSVNGGKMLTWNNDTSRNSSGNIIVDSWTTYTLLPPVIMDQLVLAVKAPVKGKNIVLDPIRMVILLLCFEGGSDADFPTMTAHFDGADVVLPPINMFSRVGPNVVCLASVYTTDVAVWGRILLSDINTLPRPVTSVTSHSVQEQLQHPLVVGFDHETKTAVLKQLWRFGNEGLSIDETELQCYHQLQSLYNSTRTAKHFQRHIVRGVEGFASLSSKQMEIVRRLADDCCKYGVDNQTTGSPLSKATLHFGNSHNSMEKESETLLRILGDQVTEPLRAQINGAPLEDARHLTRRYEKLRQEVESQAGEVLKRRSKSKDSAAISTESSMRLQSAEARLSELKSTVVALGKEASAAMLSVEDQQQQMTFQKLLIMVNAERSYHQSVLGILEKLNEEMVLDEQANGARLTSISGQRDTHADTPHEDSKRSASDADLDENSTFFLSKVVHPFDAQADGELSLSVDDYVVIRQVGSNGWDGQKENAREKQDGFPLPI 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4301807 4304619 - Conep09aG0090300.1 Cone9ag0881 445044

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0881 551 PANTHER OS07G0603500 PROTEIN-RELATED 21 182 IPR051708 GO:0005576(PANTHER)
Cone9ag0881 551 ProSiteProfiles Peptidase family A1 domain profile. 1 200 IPR033121 -
Cone9ag0881 551 MobiDBLite consensus disorder prediction 365 384 - -
Cone9ag0881 551 SUPERFAMILY SH3-domain 485 533 IPR036028 GO:0005515(InterPro)
Cone9ag0881 551 Gene3D Arfaptin homology (AH) domain/BAR domain 238 456 IPR027267 -
Cone9ag0881 551 MobiDBLite consensus disorder prediction 474 490 - -
Cone9ag0881 551 Pfam Xylanase inhibitor C-terminal 54 172 IPR032799 -
Cone9ag0881 551 Coils Coil 389 409 - -
Cone9ag0881 551 SUPERFAMILY Acid proteases 20 183 IPR021109 -
Cone9ag0881 551 SUPERFAMILY BAR/IMD domain-like 245 454 IPR027267 -
Cone9ag0881 551 Gene3D Acid Proteases 38 189 IPR021109 -
Cone9ag0881 551 Coils Coil 344 367 - -
Cone9ag0881 551 MobiDBLite consensus disorder prediction 463 490 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0881 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0876 Cone-Chr6:4475114 Cone9ag0881 Cone-Chr9:4301807 5.59E-78 dispersed
Cone6ag0875 Cone-Chr6:4471860 Cone9ag0881 Cone-Chr9:4301807 2.57E-189 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g923 . . . . . . Bma07g01221 . . . . . . . . . Cpe02g00590 . . . . . . . . . . . . . . . . Cone6ag0875 Cone9ag0881 . . . . . . . Bda09g00465 Bpe08g01063 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012200 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 0 1 1 1 27