Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0888 ATGGGATCGACTGGAAGCAAACCTTCGAGCGCTACGTCGTCTTCTTCTTCTTCTTCTTCTCGGAGGATTCGATACAAAGGCCGTCGGATTTTCAAGTCCTCCTGCCTCGATCGTTCTTCTAGATCTCACGACAGTGACAATGTCGGCGACCAGGTTTGTAGTAACCAGAACAAAGAGAGCGAAGCTTATGCTTCATCTGCAAATCAGTCTGGAACAGAGACAGATCAGACGAAGATTGATAATCACAGAGTGGTCAAACTTGACCACCAATCTGTAGAAATCCCATCTTTATCTTCCAACATTCATCTCAATGAATGGGAACCAGCAAGCGTCCCCAATATTTCTTCTACCCGAACTGGCTCTAGCTCAGTTCAAGATTCCTCCACTCAATCTTTGAACCCTTCAAGCCATTTTCTTTCCCGTTTTAGTTTTATTCCTGGTAATGTAAGCTTCAGACTAAGTAGAGCTACCAGTTTAGGATCTTCAAGGTCATTTCCAGTCTCTTCAACAAGCCCCACCTCAATGTTAAACAATGAAGATGAACTTCATTCACATAGACAACCTTCTACTGTTGTACTTCCTATAGATGAAGCTCTGCCTTCTTCAAATCATTATGGTGGTACTAGTGCTAGTTTTTCTTACATGGCTAGCGACTGTGATAATAATAATATAAGAGTAGGGTCTGATGTAAATTTATACCCTTCAGGAACCAATGCAGAAAGCAATGAGACTAGATTACCTGATAGGCGGATTGGTGATAGAGAACCAGTTGAACGGAACGTCCGTTTTAGCCGGACACTAAGTGTAGGGAGGCTCCGAGATAGAGTTCTTCGTAGACCCTCATTATCTGACTTTACATTCTGTCCTTTACAACAAGAGAGCGAAGAGAGAGAAGGTGGGAGTCAGATTGGTCAGACAAGAGTAGTAGTAGCGCCAGAAGAAAATAATAATAATAATAATACTATGGCCTCTCCAACTAGATTGGTTTATCCTTCTTCTAGCCTGTCAAGCTCCCTGTTTGGCATTCACGATTATGAGGGGGGAACTAACCGGCCAAGAGAAGCTAGATACCAGGATCTTCAGGAGCATAGGTCAAATTTCCTTGAACGTAGAAGAAGAATTCGGTCCCAGGTTCGTGCGCTTCAAAGACTGGGAAGCCGATTTGAGAACCTATCTGGCCATGAGAGATCGTGCATATTATCTGGTCAACATAGAACGGGTCGTTGTACATGTCAAATTAATACCCGAGAGGATAACATAAATGATAATAATGGTGCTAGGGCCAGTATATCAAGAATCGTGATGTTAGCAGAAGCTTTATTTGAGGTAGAATTTGTTCTGGATGAAATTCACCAGCAATCTGTGGTTCTAACTTCTCAACCATCCATTTCTTCGATTGGGTCCGTTCCTGCACCTAATGAAGCTGTGGAATCCTTGCCTGTCAAATTATACTCCAAGTTAAAGAAACACGAGACTGATGAAATCCCACAATGTTATATTTGCCTAGTAGAGTATGAAGAAGGAGACGACATGAGAATACTTCCTTGCCACCATGAATTCCATAGGACATGTGTAGATAAATGGCTGAAAGAGATTCACAGGGTTTGTCCACTTTGTCGGAGGGATGTATGCCTGTCTGTTGAGAACTAG 1650 42.55 MGSTGSKPSSATSSSSSSSSRRIRYKGRRIFKSSCLDRSSRSHDSDNVGDQVCSNQNKESEAYASSANQSGTETDQTKIDNHRVVKLDHQSVEIPSLSSNIHLNEWEPASVPNISSTRTGSSSVQDSSTQSLNPSSHFLSRFSFIPGNVSFRLSRATSLGSSRSFPVSSTSPTSMLNNEDELHSHRQPSTVVLPIDEALPSSNHYGGTSASFSYMASDCDNNNIRVGSDVNLYPSGTNAESNETRLPDRRIGDREPVERNVRFSRTLSVGRLRDRVLRRPSLSDFTFCPLQQESEEREGGSQIGQTRVVVAPEENNNNNNTMASPTRLVYPSSSLSSSLFGIHDYEGGTNRPREARYQDLQEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHERSCILSGQHRTGRCTCQINTREDNINDNNGARASISRIVMLAEALFEVEFVLDEIHQQSVVLTSQPSISSIGSVPAPNEAVESLPVKLYSKLKKHETDEIPQCYICLVEYEEGDDMRILPCHHEFHRTCVDKWLKEIHRVCPLCRRDVCLSVEN 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4333137 4336191 + Conep09aG0091000.1 Cone9ag0888 445051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0888 549 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 545 - -
Cone9ag0888 549 MobiDBLite consensus disorder prediction 1 21 - -
Cone9ag0888 549 MobiDBLite consensus disorder prediction 160 179 - -
Cone9ag0888 549 FunFam Putative RING zinc finger domain superfamily protein 466 545 - -
Cone9ag0888 549 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 460 544 IPR013083 -
Cone9ag0888 549 SMART ring_2 498 539 IPR001841 -
Cone9ag0888 549 MobiDBLite consensus disorder prediction 160 178 - -
Cone9ag0888 549 MobiDBLite consensus disorder prediction 1 79 - -
Cone9ag0888 549 MobiDBLite consensus disorder prediction 46 75 - -
Cone9ag0888 549 MobiDBLite consensus disorder prediction 112 132 - -
Cone9ag0888 549 SUPERFAMILY RING/U-box 476 546 - -
Cone9ag0888 549 MobiDBLite consensus disorder prediction 30 45 - -
Cone9ag0888 549 Pfam Ring finger domain 497 540 IPR001841 -
Cone9ag0888 549 ProSiteProfiles Zinc finger RING-type profile. 498 540 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone9ag0760 Cone-Chr9:3637166 Cone9ag0888 Cone-Chr9:4333137 3.99E-10 dispersed
Cone19ag0136 Cone-Chr19:730622 Cone9ag0888 Cone-Chr9:4333137 2.71E-10 transposed
Cone9ag0823 Cone-Chr9:3982397 Cone9ag0888 Cone-Chr9:4333137 3.16E-168 transposed
Cone6ag0884 Cone-Chr6:4512765 Cone9ag0888 Cone-Chr9:4333137 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0888 - - - 0.0