Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0889 ATGAATAACAGCATAAGCGACGATACCTTCGAACCTCATACCGATCAACAAAACAGTCACTACTTAGCTCACTCAATTCAACCACAATCTCAGCCCCAGACCCGTCGTCCTCGTGGATTTGCCGCCACCGCGGCTGCCTCTGCGGCTAGAATTGGCGCAAACGACGGTGCCGCCGGTAGTACCGCCGGAGCTAAAGGAAAGAGGGAGAAAGAGAAAAAACGTACGAAGCTTCGAGAACCCCATCGCCGAGCTATCACAAGCAGGATGCGAGCTGGACTCCGTCAATACGGTAATTTCCCTCTCCCAGCTCGCGCCGATATGAACGATGTGCTGGCCGCGCTTGCTAGGGAAGCTGGCTGGATTGTTGAGGCGGATGGAACCACCTACCGACAGTCTCCTCCTCCTCCTCTTCCTCAGTCTCAACTGGCAGCATTTCCTGTTAGGTCAGTAGAAAGCCCTCTCTCTTCTGAGAGAGAAGTGAAAAATGATAAGTATCCCAGCCCCATCAGCTCAGCTGACTGCTTAGAAGCTGATCAGCTTCTACAGGATCTTCGCCCTGGAGAGATCATAGGCACTCCATATGTCCCAGTTTATGTAACACTTGCATCATTGAATGTGGATGGTGTAGTTGTGGATTGTTGGTGGGGCATCGTTGAAGGTTGGAGCCCACAGAAGTATGTATGGTCAGGATATCGGGAGCTTTTCAACATCATACGAGAGTTCAAGCTGAAACTGCAGGTTGTGATGGCATTTCACATGTGTGGTGGAATTCAATCTGGGGATGCACTGATAAGCCTCCCACAATGGGTTTTGGATGGTGGAAGAGAAAACCGGGATATATTCTTCACCGACCGTGAAGGAAGAAGGAATGATGAATGTTCATCTTGGGAAATAGGGCTTGGAGCAGCTGGGGAACTCAAGTACCCATCTTTTCCAGAAAGGATGGGATGGAGCTATTATGGGCGGTTTTTCCTGAATTGGTATGCCCAATCACTGACATCCCATGTGGATAATGTTTTATCTCTTGCTAACCTGGCTTTTGAGGATACTAAATTAATTGTTAAGGTCCCAGCTCTTTATTGGTGGTACAAGACTTCCAGTCATGCAGCAGAGCTTACTGCAGGATTCTATAACCCTACAAACCAGGATGGTTATTCCCCGATTTTTGAGGTTCTTAAGAAACATTCAGCCACAGTGAAGCTTGTCTGCTCGGGTTTAGACATCGTTCGTCCAGTTTTGAATTCAGCCTGGGATCGGGGATTAACTGTAGCAGGTGAAAACGCACTTTCATGCTGCAACAGAGATGGGTTTATGAGAATAGTGGAGATTGCGAAGCCAAGAAACGATCCCGACCGACGCCATTTCTCTTATTTTGTGTATCGTCAGCCAACTCCGTCAATACAGGGGACAATTTATTACCCAGAGCTGGATTACTTCATTAAGTCCATGCATGGTGAAATAGCCGGTGATTTTTAG 1476 47.9 MNNSISDDTFEPHTDQQNSHYLAHSIQPQSQPQTRRPRGFAATAAASAARIGANDGAAGSTAGAKGKREKEKKRTKLREPHRRAITSRMRAGLRQYGNFPLPARADMNDVLAALAREAGWIVEADGTTYRQSPPPPLPQSQLAAFPVRSVESPLSSEREVKNDKYPSPISSADCLEADQLLQDLRPGEIIGTPYVPVYVTLASLNVDGVVVDCWWGIVEGWSPQKYVWSGYRELFNIIREFKLKLQVVMAFHMCGGIQSGDALISLPQWVLDGGRENRDIFFTDREGRRNDECSSWEIGLGAAGELKYPSFPERMGWSYYGRFFLNWYAQSLTSHVDNVLSLANLAFEDTKLIVKVPALYWWYKTSSHAAELTAGFYNPTNQDGYSPIFEVLKKHSATVKLVCSGLDIVRPVLNSAWDRGLTVAGENALSCCNRDGFMRIVEIAKPRNDPDRRHFSYFVYRQPTPSIQGTIYYPELDYFIKSMHGEIAGDF 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4336429 4339359 + Conep09aG0091100.1 Cone9ag0889 445052

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0889 491 MobiDBLite consensus disorder prediction 1 37 - -
Cone9ag0889 491 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 205 219 IPR001554 GO:0000272(InterPro)|GO:0016161(InterPro)
Cone9ag0889 491 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 248 269 IPR001554 GO:0000272(InterPro)|GO:0016161(InterPro)
Cone9ag0889 491 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 226 244 IPR001554 GO:0000272(InterPro)|GO:0016161(InterPro)
Cone9ag0889 491 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 75 202 IPR001554 GO:0000272(InterPro)|GO:0016161(InterPro)
Cone9ag0889 491 MobiDBLite consensus disorder prediction 1 81 - -
Cone9ag0889 491 Pfam Glycosyl hydrolase family 14 205 293 IPR001554 GO:0000272(InterPro)|GO:0016161(InterPro)
Cone9ag0889 491 Pfam Glycosyl hydrolase family 14 318 450 IPR001554 GO:0000272(InterPro)|GO:0016161(InterPro)
Cone9ag0889 491 SUPERFAMILY (Trans)glycosidases 195 486 IPR017853 -
Cone9ag0889 491 Gene3D Glycosidases 199 299 - -
Cone9ag0889 491 Gene3D Glycosidases 318 489 - -
Cone9ag0889 491 Pfam BES1/BZR1 plant transcription factor, N-terminal 64 172 IPR008540 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0889 K01177 - - sly:101251494 516.538
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag0362 Cone-Chr7:1575054 Cone9ag0889 Cone-Chr9:4336429 1.85E-40 dispersed
Cone6ag0885 Cone-Chr6:4515872 Cone9ag0889 Cone-Chr9:4336429 7.14E-271 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g940 Blo02g01221 . . . Bpe05g00764 . . . . Cmo16g00557 . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0885 Cone9ag0889 . . . . . . . . . . . . . . . . Cma16g00510 . . Cpe01g00537 . . . . . . . . . . . . . . . . Csa04g00708 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0054219 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46844 PF13934 ELYS 2.90E-53 No_clan Cone TF