Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cone9ag0904	ATGGACCTCAGTGACGAAATTAGGGCAGCTCACAAGCGAGAGTTCTTGGAATTCCTCGAACAAGATGTAGGTAAGGGCATATATATGGATGAGATCAAAGCCATGATCAATCACAAGCGCCACCGCCTGATCGTCAACATTTCCGACCTCCATTCTTTCCGAGACCTAGGTCCCAGGATTCTCAAGAATCCAGGTGAGTACATGCAACCCTTCAGCGATGCAGTCACGGAAACTGCTCGCAGCATTGATCCACGGTACCTGAAAGAAGGAGAGCAAGTACTTGTTGGATTTGAGGGACCCTTTGTTTCTCGCCGTGTCACACCCAGAGAACTTCTTTCTGAGTTCATTGGCTCCATGGTCTGTGTTGAGGGCATTATCACCAAATGTTCTCTTGTGAGGCCAAAAGTTGTCAAGAGTGTCCACTATTGCCCTAAAACTAAGAACTTCACCAGTCGTGAATACCGTGATATTACATCCAATATGGGTTTGCCAACAGGCTCTGTGTATCCCACAAGGGATGAAAATGGTAACTTATTGGTCACTGAGTATGGATTGTGCAAATACAAAGATCATCAAACCTTATCGATGCAAGAGATGCCTGAGAATTCTGCTCCTGGTCAGCTTCCGAGAACTGTAGATGTCATAGTTGAGGATGACTTAGTTGATTCATGCAAGCCTGGAGATCGTGTTTCTATTGTCGGGATATACAAAGCTCTTCCAGGAAAGAACAAGGGCAGTGTGAATGGAGTATTCAGGACTGTTCTCATTGCTAACAATGTTTCTCTGCTCAACAAAGAGGCAAATGCGCCAGTTTATAGTCCTGAAGACTTGAAAAACATTAAAAAGATAGCTGAAAGAGAAGATACATTTGACCTCCTTGGTAACTCTCTCGCACCTTCTATATACGGGCATTTATGGATAAAGAAAGCTGTGATACTACTAATGCTTGGTGGGGTAGAAAAGAACTTAAAGAACGGCACCCATCTACGAGGTGATATCAACATGATGATGGTTGGCGATCCTTCTGTTGCAAAGTCTCAACTTTTAAGAGCAATCATGAATATTGCCCCCCTGGCAATTTCGACTACAGGTCGTGGTTCATCTGGTGTTGGGTTGACAGCTGCTGTTACTTCAGATCAAGAAACCGGCGAACGAAGGCTAGAAGCAGGTGCAATGGTTCTTGCTGATCGAGGTGTTGTCTGTATTGATGAGTTTGACAAGATGAATGACCAAGATCGAGTTGCCATACATGAGGTTATGGAGCAGCAGACAGTCACCATTGCAAAAGCTGGTATCCATGCATCTCTTAATGCTCGGTGCAGTGTCGTGGCTGCTGCGAACCCTATATATGGAACTTATGACCGTTCTTTGACTCCAACAAAGAATATTGGACTTCCAGACTCCTTGCTTTCTCGATTTGATTTACTTTTCATTGTATTGGATCAAATGGACGCTGATATTGACCGAAAAATCGGGGAACATGTCTTGCGTATGCATCGATTCCGTTCACCAATGGATGGAGGTGAGTCAGCACTTAATGGGAGCTCGAGATATGGAAGAGAAGATGAATTTGATACCGATTCTTCTGTCTTTGTTAAGTACAATAGAATGCTACATGGGAAAAAAACAGAAAGGGGTCGGAAGCGTGATACCCTCTCTATCAAGTTTCTTAAGAAGTACATTCATTATGCAAAGCATAGGATACAGCCCGACTTAACTGATGAGGCATCTGAACAAATAGCAACAGCATATGCAGAGCTAAGAAATGCCAGTTCAAACACAAAGACTGGAGGCACACTTCCATTTACTGCCAGAACTTTGGAAACCATAATAAGAGTCTCAACTGCTCATGCCAAATTGAAGTTGAGCAGAAAGGTTTCCAAGTCAGATGTTGAAGCTGCATTGAAGGTTCTAAATTTTGCGATTTATCATACAGAGTTGAATGAAATGGAAGAGCGCGAGCAAGAAAGAGAGAGAGAATCAGATAGAAAAGGCAAAGCTGACCCCCATCATGGCAAAAATGATCAAAACGTACGTGGTACAAACAGCAAGGAAAGTATGATCGATTCCATGGAAGTTGATGATCAATCTGAACCTGCAGCTGGTATTTATCCAGAGAGAATTGAAGCATTTAATTCTTTATTTGGTCAGCATATGCACTCAAATCGTTTGTCAGCTATATCTATTGAGGAAATAGAGAATGTTGTCAACGGTCAAGCAGGGGTCCATTACTCAAAGGAAGAGATCACATTACTATTAGAGAAGTTGCAGCTTAGTGGCGCGGTGATGCTTGCTGATGGAGGAATGGTGCATATGATAGCATGA	2325	43.01	MDLSDEIRAAHKREFLEFLEQDVGKGIYMDEIKAMINHKRHRLIVNISDLHSFRDLGPRILKNPGEYMQPFSDAVTETARSIDPRYLKEGEQVLVGFEGPFVSRRVTPRELLSEFIGSMVCVEGIITKCSLVRPKVVKSVHYCPKTKNFTSREYRDITSNMGLPTGSVYPTRDENGNLLVTEYGLCKYKDHQTLSMQEMPENSAPGQLPRTVDVIVEDDLVDSCKPGDRVSIVGIYKALPGKNKGSVNGVFRTVLIANNVSLLNKEANAPVYSPEDLKNIKKIAEREDTFDLLGNSLAPSIYGHLWIKKAVILLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDADIDRKIGEHVLRMHRFRSPMDGGESALNGSSRYGREDEFDTDSSVFVKYNRMLHGKKTERGRKRDTLSIKFLKKYIHYAKHRIQPDLTDEASEQIATAYAELRNASSNTKTGGTLPFTARTLETIIRVSTAHAKLKLSRKVSKSDVEAALKVLNFAIYHTELNEMEEREQERERESDRKGKADPHHGKNDQNVRGTNSKESMIDSMEVDDQSEPAAGIYPERIEAFNSLFGQHMHSNRLSAISIEEIENVVNGQAGVHYSKEEITLLLEKLQLSGAVMLADGGMVHMIA	774

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
9	4438074	4443059	-	Conep09aG0092700.1	Cone9ag0904	445067

Annotation

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Cone9ag0904	774	ProSitePatterns	MCM family signature.	398	406	IPR018525	GO:0003677(InterPro)\|GO:0005524(InterPro)\|GO:0006260(InterPro)
Cone9ag0904	774	Gene3D	-	135	189	-	-
Cone9ag0904	774	Gene3D	-	4	99	-	-
Cone9ag0904	774	ProSiteProfiles	MCM family domain profile.	289	495	IPR001208	GO:0003677(InterPro)\|GO:0005524(InterPro)\|GO:0032508(InterPro)
Cone9ag0904	774	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	442	454	IPR001208	GO:0003677(InterPro)\|GO:0005524(InterPro)\|GO:0032508(InterPro)
Cone9ag0904	774	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	418	431	IPR001208	GO:0003677(InterPro)\|GO:0005524(InterPro)\|GO:0032508(InterPro)
Cone9ag0904	774	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	469	477	IPR001208	GO:0003677(InterPro)\|GO:0005524(InterPro)\|GO:0032508(InterPro)
Cone9ag0904	774	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	330	345	IPR001208	GO:0003677(InterPro)\|GO:0005524(InterPro)\|GO:0032508(InterPro)
Cone9ag0904	774	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	390	404	IPR001208	GO:0003677(InterPro)\|GO:0005524(InterPro)\|GO:0032508(InterPro)
Cone9ag0904	774	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	299	653	IPR027417	-
Cone9ag0904	774	FunFam	DNA helicase	5	104	-	-
Cone9ag0904	774	CDD	MCM3	292	641	-	-
Cone9ag0904	774	PANTHER	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	5	734	IPR031327	GO:0000727(PANTHER)\|GO:0003677(InterPro)\|GO:0003697(PANTHER)\|GO:0005524(InterPro)\|GO:0005634(PANTHER)\|GO:0006271(PANTHER)\|GO:0017116(PANTHER)\|GO:0032508(InterPro)\|GO:0042555(PANTHER)\|GO:1902975(PANTHER)
Cone9ag0904	774	MobiDBLite	consensus disorder prediction	649	684	-	-
Cone9ag0904	774	Pfam	MCM P-loop domain	277	499	IPR001208	GO:0003677(InterPro)\|GO:0005524(InterPro)\|GO:0032508(InterPro)
Cone9ag0904	774	MobiDBLite	consensus disorder prediction	649	678	-	-
Cone9ag0904	774	SMART	AAA_5	331	484	IPR003593	GO:0016887(InterPro)
Cone9ag0904	774	Gene3D	-	109	239	IPR012340	-
Cone9ag0904	774	FunFam	DNA helicase	135	189	-	-
Cone9ag0904	774	Pfam	MCM OB domain	109	239	IPR033762	-
Cone9ag0904	774	Pfam	MCM N-terminal domain	12	98	IPR027925	-
Cone9ag0904	774	Pfam	MCM AAA-lid domain	556	639	IPR041562	-
Cone9ag0904	774	Gene3D	-	271	663	IPR027417	-
Cone9ag0904	774	PRINTS	Mini-chromosome maintenance (MCM) protein 3 signature	207	219	IPR008046	GO:0003677(InterPro)\|GO:0005524(InterPro)\|GO:0006270(InterPro)\|GO:0042555(InterPro)
Cone9ag0904	774	PRINTS	Mini-chromosome maintenance (MCM) protein 3 signature	630	645	IPR008046	GO:0003677(InterPro)\|GO:0005524(InterPro)\|GO:0006270(InterPro)\|GO:0042555(InterPro)
Cone9ag0904	774	PRINTS	Mini-chromosome maintenance (MCM) protein 3 signature	491	501	IPR008046	GO:0003677(InterPro)\|GO:0005524(InterPro)\|GO:0006270(InterPro)\|GO:0042555(InterPro)
Cone9ag0904	774	PRINTS	Mini-chromosome maintenance (MCM) protein 3 signature	458	468	IPR008046	GO:0003677(InterPro)\|GO:0005524(InterPro)\|GO:0006270(InterPro)\|GO:0042555(InterPro)
Cone9ag0904	774	PRINTS	Mini-chromosome maintenance (MCM) protein 3 signature	181	195	IPR008046	GO:0003677(InterPro)\|GO:0005524(InterPro)\|GO:0006270(InterPro)\|GO:0042555(InterPro)
Cone9ag0904	774	SUPERFAMILY	Nucleic acid-binding proteins	13	259	IPR012340	-
Cone9ag0904	774	SMART	mcm	104	643	IPR031327	GO:0003677(InterPro)\|GO:0005524(InterPro)\|GO:0032508(InterPro)

Pathway

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cone9ag0904	K02541	-	-	mtr:11407765	1293.87

Dupl-types

Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
Cone5ag1384	Cone-Chr5:8503744	Cone9ag0904	Cone-Chr9:4438074	1.30E-91	dispersed
Cone8ag1012	Cone-Chr8:9415074	Cone9ag0904	Cone-Chr9:4438074	5.62E-61	dispersed
Cone9ag0904	Cone-Chr9:4438074	Cone16ag0446	Cone-Chr16:6781760	9.28E-93	transposed

Deco-Alignment

Select	Vvi1	Blo1	Blo2	Bda1	Bda2	Bpe1	Bpe2	Bma1	Bma2	Cmo1	Cmo2	Cma1	Cma2	Car1	Car2	Sed1	Cpe1	Cpe2	Bhi1	Tan1	Cmetu1	Lac1	Hepe1	Mch1	Lcy1	Cla1	Cam1	Cec1	Cco1	Clacu1	Cmu1	Cre1	Cone1	Cone2	Cone3	Cone4	Lsi1	Csa1	Chy1	Cme1	Blo3	Blo4	Bda3	Bda4	Bpe3	Bpe4	Bma3	Bma4	Sed2	Cmo3	Cmo4	Cma3	Cma4	Car3	Car4	Cpe3	Cpe4	Bhi2	Tan2	Cmetu2	Lac2	Hepe2	Mch2	Lcy2	Cla2	Cam2	Cec2	Cco2	Clacu2	Cmu2	Cre2	Lsi2	Csa2	Chy2	Cme2
	Vvi10g382	.	.	Bda02g00085	.	.	Bpe01g00814	.	.	.	.	Cma03g01388	Cma07g00117	.	Car07g00104	Sed14g1703	.	.	Bhi03g00062	Tan03g2685	Cmetu01g2697	.	Hepe04g1984	.	.	Cla01g02393	Cam01g2506	Cec04g2153	Cco04g2230	.	Cmu01g2390	.	.	.	.	Cone9ag0904	.	Csa06g03777	.	Cme08g00150	.	.	.	.	.	.	.	.	.	Cmo03g01381	Cmo07g00117	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Chy02g00156	.

Syn-Families

Gene	Event_type	S_start	S_end	Function	Ath_gene	Identity(%)	E-value	Score
Cone11ag1488	.	2	874	Core DNA Replication Machinery Family	AT4G14700	59.5	3.9e-283	971.5
Cone11ag1488	.	1	874	Core DNA Replication Machinery Family	AT4G12620	60.9	1.2e-292	1003.0
Cone19ag0109	.	2	357	Core DNA Replication Machinery Family	AT2G37560	66.3	3.0e-136	482.3
Cone13ag0792	.	5	417	Core DNA Replication Machinery Family	AT2G01120	63.3	9.1e-151	530.8
Cone14ag0366	.	1	535	Core DNA Replication Machinery Family	AT4G29910	56.1	8.7e-165	577.8
Cone19ag0949	.	1	275	Core DNA Replication Machinery Family	AT1G26840	64.7	6.9e-94	341.3
Cone14ag0637	.	1	946	Core DNA Replication Machinery Family	AT1G44900	76.0	0.0e+00	1381.3
Cone9ag0904	.	1	578	Core DNA Replication Machinery Family	AT5G46280	79.8	6.1e-267	917.1
Cone3ag1220	.	1	839	Core DNA Replication Machinery Family	AT2G16440	70.4	0.0e+00	1122.8
Cone16ag0446	.	1	728	Core DNA Replication Machinery Family	AT2G07690	75.5	1.4e-313	1072.4
Cone2ag0557	.	44	541	Core DNA Replication Machinery Family	AT2G07690	63.4	4.1e-191	665.6
Cone5ag1384	.	7	783	Core DNA Replication Machinery Family	AT5G44635	69.2	0.0e+00	1119.4
Cone20ag0983	.	5	719	Core DNA Replication Machinery Family	AT4G02060	83.2	0.0e+00	1200.7
Cone5ag1091	.	31	492	Core DNA Replication Machinery Family	AT2G29680	56.3	1.7e-143	506.9
Cone1ag0580	.	96	449	Core DNA Replication Machinery Family	AT2G29680	59.6	1.1e-107	387.9
Cone5ag1091	.	32	453	Core DNA Replication Machinery Family	AT1G07270	56.0	2.7e-127	453.0
Cone1ag0580	.	96	427	Core DNA Replication Machinery Family	AT1G07270	61.4	3.5e-103	372.9
Cone7ag0082	.	1	593	Core DNA Replication Machinery Family	AT3G25100	75.8	3.6e-254	874.8
Cone4ag0091	.	1	593	Core DNA Replication Machinery Family	AT3G25100	75.5	1.5e-252	869.4
Cone19ag1277	.	20	800	Core DNA Replication Machinery Family	AT3G09660	72.6	0.0e+00	1097.4
Cone8ag1012	.	1276	1913	Core DNA Replication Machinery Family	AT2G14050	76.8	3.9e-286	981.1
Cone12ag0982	.	6	505	Core DNA Replication Machinery Family	AT2G14050	59.2	1.7e-185	646.7
Cone16ag0785	.	5	334	Core DNA Replication Machinery Family	AT2G20980	59.8	4.9e-106	382.1
Cone2ag0356	.	1	199	Core DNA Replication Machinery Family	AT1G80190	70.8	3.8e-78	288.5
Cone10ag0951	.	1	145	Core DNA Replication Machinery Family	AT3G12530	71.0	4.9e-59	224.6
Cone11ag1192	.	1	182	Core DNA Replication Machinery Family	AT1G19080	69.8	1.8e-71	266.2
Cone11ag1192	.	1	182	Core DNA Replication Machinery Family	AT3G55490	69.8	1.8e-71	266.2
Cone14ag0711	.	15	164	Core DNA Replication Machinery Family	AT5G49010	64.7	4.5e-49	191.8
Cone11ag1102	.	1	1553	Core DNA Replication Machinery Family	AT5G67100	60.8	0.0e+00	1779.6
Cone19ag1109	.	140	760	Core DNA Replication Machinery Family	AT1G67630	61.1	1.4e-221	766.5
Cone13ag1130	.	4	313	Core DNA Replication Machinery Family	AT1G67630	50.2	2.7e-79	293.9
Cone6ag0848	.	1	320	Core DNA Replication Machinery Family	AT5G41880	65.0	4.2e-130	462.2
Cone9ag0846	.	1	231	Core DNA Replication Machinery Family	AT5G41880	64.9	1.9e-90	330.5
Cone9ag1229	.	3	1010	Core DNA Replication Machinery Family	AT5G63960	79.2	0.0e+00	1621.7
Cone13ag0534	.	4	439	Core DNA Replication Machinery Family	AT2G42120	78.3	1.1e-207	719.9
Cone19ag0482	.	4	439	Core DNA Replication Machinery Family	AT2G42120	76.7	2.1e-203	705.7
Cone1ag0529	.	1	2094	Core DNA Replication Machinery Family	AT1G08260	69.8	0.0e+00	2929.0
Cone5ag1351	.	2	187	Core DNA Replication Machinery Family	AT1G08260	57.5	4.5e-57	221.9
Cone5ag1350	.	1	151	Core DNA Replication Machinery Family	AT1G08260	64.2	1.7e-48	193.4
Cone1ag0529	.	10	2211	Core DNA Replication Machinery Family	AT2G27120	66.6	0.0e+00	2889.4
Cone5ag1351	.	2	187	Core DNA Replication Machinery Family	AT2G27120	53.2	1.3e-48	193.7
Cone5ag1350	.	9	151	Core DNA Replication Machinery Family	AT2G27120	66.4	7.3e-47	188.0
Cone19ag0415	.	7	459	Core DNA Replication Machinery Family	AT5G22110	64.9	3.6e-175	612.1
Cone5ag1309	.	1	956	Core DNA Replication Machinery Family	AT5G22010	63.0	1.9e-310	1062.4
Cone12ag0326	.	23	342	Core DNA Replication Machinery Family	AT1G63160	92.8	6.2e-171	597.4
Cone8ag0325	.	20	205	Core DNA Replication Machinery Family	AT1G63160	53.0	5.1e-80	295.4
Cone3ag0535	.	41	394	Core DNA Replication Machinery Family	AT5G27740	85.9	5.1e-179	624.4
Cone4ag1422	.	1	334	Core DNA Replication Machinery Family	AT1G21690	82.1	1.8e-154	542.7
Cone7ag1515	.	2	137	Core DNA Replication Machinery Family	AT1G21690	70.1	2.4e-45	180.3
Cone17ag1292	.	1	364	Core DNA Replication Machinery Family	AT1G77470	75.9	4.2e-152	535.0
Cone20ag0436	.	1	297	Core DNA Replication Machinery Family	AT1G77470	61.2	6.6e-89	325.1
Cone7ag0036	.	24	617	Core DNA Replication Machinery Family	AT2G06510	69.5	5.4e-253	870.9
Cone12ag0531	.	32	688	Core DNA Replication Machinery Family	AT2G06510	53.7	3.6e-204	708.8
Cone8ag0528	.	32	695	Core DNA Replication Machinery Family	AT2G06510	53.1	9.7e-202	700.7
Cone2ag0799	.	1	628	Core DNA Replication Machinery Family	AT5G08020	67.7	9.4e-250	860.1
Cone16ag0210	.	1	628	Core DNA Replication Machinery Family	AT5G08020	67.2	5.1e-248	854.4
Cone12ag0531	.	6	811	Core DNA Replication Machinery Family	AT5G45400	50.2	1.3e-233	807.0
Cone2ag0799	.	1	622	Core DNA Replication Machinery Family	AT5G61000	69.3	2.9e-254	875.2
Cone16ag0210	.	1	622	Core DNA Replication Machinery Family	AT5G61000	69.6	3.2e-253	871.7
Cone12ag0531	.	6	798	Core DNA Replication Machinery Family	AT4G19130	55.3	3.2e-234	808.9
Cone8ag0528	.	6	820	Core DNA Replication Machinery Family	AT4G19130	54.2	6.1e-233	804.7
Cone5ag0109	.	1	361	Core DNA Replication Machinery Family	AT5G26680	87.8	1.5e-182	636.3
Cone1ag1587	.	1	361	Core DNA Replication Machinery Family	AT5G26680	87.8	3.7e-181	631.7
Cone7ag0441	.	2	1118	Core DNA Replication Machinery Family	AT1G08840	52.8	1.4e-306	1049.7
Cone1ag1430	.	1	296	Core DNA Replication Machinery Family	AT2G25100	67.8	7.6e-114	407.5
Cone1ag0493	.	170	805	Core DNA Replication Machinery Family	AT1G08130	76.3	3.5e-289	991.5
Cone19ag1014	.	25	624	Core DNA Replication Machinery Family	AT1G08130	63.9	3.2e-226	782.3
Cone6ag0127	.	127	494	Core DNA Replication Machinery Family	AT1G08130	66.8	2.9e-134	476.9
Cone1ag0493	.	206	805	Core DNA Replication Machinery Family	AT1G49250	67.8	2.9e-236	815.5
Cone19ag1014	.	65	624	Core DNA Replication Machinery Family	AT1G49250	57.8	4.2e-187	652.1
Cone6ag0127	.	165	495	Core DNA Replication Machinery Family	AT1G49250	61.1	4.0e-105	379.8

Syn-Orthogroups

Select	Orthogroup	Bda	Bhi	Blo	Bma	Bpe	Cam	Car	Cco	Cec	Chy	Cla	Clacu	Cma	Cme	Cmetu	Cmo	Cmu	Cone	Cpe	Cre	Csa	HCH	Hepe	Lac	Lcy	Lsi	Mch	Sed	Tan	Vvi	Total
	OG0011182	1	1	1	0	1	1	2	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	2	1	1	31