Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0912 ATGGCTGCTTCAACAATGGCTCTCTCTTCCCCATCATTTGCCGGACAGGCAGTAAAGCTCGCTCCCTCCGGCTCGGACATCCTCGGAAACGGTAGAGTCAGCATGAGGAAAACCGCTACCAAGAAAGTTGTTTCCTCAGGAAGCCCATGGTACGGCCCAGACCGTGTTAAGTACTTGGGCCCATTCTCTGGCGAGGCTCCATCTTACCTTACCGGAGAATTCCCCGGTGACTACGGCTGGGACACCGCCGGGCTTTCGGCCGACCCAGAGACATTCGCCAAGAACCGTGAGCTTGAAGTGATCCATTCAAGATGGGCCATGCTTGGTGCTCTTGGATGCGTCTTCCCTGAGCTCTTGGCCCGCAACGGTGTGAAGTTCGGTGAGGCCGTGTGGTTCAAGGCCGGAGCTCAAATCTTCAGTGAAGGTGGACTCGACTACTTGGGCAACCCCAGCTTGATCCACGCCCAAAGCATCTTAGCAATTTGGGCCACACAGGTGATCTTGATGGGCGCGGTTGAGGGGTACCGTGTTGCAGGTGGGCCACTTGGAGAAGTGACCGACCCACTATACCCGGGTGGAAGCTTTGATCCACTGGGCCTTGCTGAAGATCCAGAGGCTTTTGCTGAGTTGAAGGTGAAGGAGCTGAAGAATGGAAGACTAGCCATGTTTTCTATGTTTGGATTCTTCGTACAAGCTATTGTGACAGGAAAGGGCCCACTAGAGAACCTCGCCGACCACCTTGCCGACCCGGTCAGCAACAACGCATGGGCCTACGCCACAAACTTTGTGCCCGGAAAATGA 801 55.18 MAASTMALSSPSFAGQAVKLAPSGSDILGNGRVSMRKTATKKVVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRVAGGPLGEVTDPLYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVSNNAWAYATNFVPGK 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4480977 4482063 - Conep09aG0093500.1 Cone9ag0912 445075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0912 266 Pfam Chlorophyll A-B binding protein 66 233 IPR022796 -
Cone9ag0912 266 SUPERFAMILY Chlorophyll a-b binding protein 49 263 - -
Cone9ag0912 266 Gene3D Chlorophyll a/b binding protein domain 57 259 - -
Cone9ag0912 266 FunFam Chlorophyll a-b binding protein, chloroplastic 57 259 - -
Cone9ag0912 266 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 4 266 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag0081 Cone-Chr7:361283 Cone9ag0912 Cone-Chr9:4480977 3.94E-70 dispersed
Cone8ag1383 Cone-Chr8:10959263 Cone9ag0912 Cone-Chr9:4480977 4.62E-151 dispersed
Cone9ag0132 Cone-Chr9:578039 Cone9ag0912 Cone-Chr9:4480977 5.22E-122 dispersed
Cone9ag0912 Cone-Chr9:4480977 Cone9ag0914 Cone-Chr9:4485407 3.08E-195 proximal
Cone3ag1170 Cone-Chr3:30367837 Cone9ag0912 Cone-Chr9:4480977 8.19E-85 transposed
Cone3ag1486 Cone-Chr3:33523763 Cone9ag0912 Cone-Chr9:4480977 4.51E-186 transposed
Cone1ag0250 Cone-Chr1:1666782 Cone9ag0912 Cone-Chr9:4480977 7.67E-178 wgd
Cone6ag0906 Cone-Chr6:4652083 Cone9ag0912 Cone-Chr9:4480977 1.92E-191 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0912 K08912 - mdm:103419710 512.686