Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0936 ATGGCATACCAAGATCATATTCAAAACCAATCTATGTCACTCTCTCCTCAGAGAAAAATTGGTAGGGGAAAGATTGAGATCAAGCGGATCGAGAGCACAACAAACCGGCAAGTGACTTTCTGCAAACGGCGCAACGGTTTGCTCAAGAAATCTTACGAGCTCTCGGTTCTCTGTGATGCCGAGGTTGCTCTTGTCGTCTTCTCTAGCCGTGGCCGACTCTATGAATATGCTAGCAACAGTGTAAAAGCAACTATCGAGAGGTACAAGAAGGCGTCCGATACTACAAACACCGGTTCGATTGCTGAAATTAATGCCGAATTTTATCAGAAAGAAGCTGCCAAATTGCATACACAAATCATCAAGTTACAGAATTCAAACAGGCAAATGTTGGGAGACTCATTGAGCCCATTGTGCATGAAGGAACTAAAATCTCTGGAGGTGAAATTGGAGAAAGGAATTAGCAGAATCAGATCCAGAAAGAATGAGCTCTTGTTTGCAGAAATTGAGTACATGCAGAAAAGGGAAATCGATCTGCACAACAATAACCGTCTGATCCGAGCCAAGATAGCTGAGAATGAGAGAAGCCAGCAAAATGGGAATATGATAGCAGGAGGAAGCGGGCCGTGGCCTAATCACAATTATGAGCTTATCCACAACCAGCATCAACATCATAATCATCAATATCATGACTCTCGTAACTATTTTGAAGTGAATGCTTTGCAACCCATCACTACTACTACGGCTGCTACCGCTTCTACTCCTACTTCTCTTCACTACCCTCGCCAGGACCACCAAATGCCTCTTCAGTTAGTTTAG 816 43.63 MAYQDHIQNQSMSLSPQRKIGRGKIEIKRIESTTNRQVTFCKRRNGLLKKSYELSVLCDAEVALVVFSSRGRLYEYASNSVKATIERYKKASDTTNTGSIAEINAEFYQKEAAKLHTQIIKLQNSNRQMLGDSLSPLCMKELKSLEVKLEKGISRIRSRKNELLFAEIEYMQKREIDLHNNNRLIRAKIAENERSQQNGNMIAGGSGPWPNHNYELIHNQHQHHNHQYHDSRNYFEVNALQPITTTTAATASTPTSLHYPRQDHQMPLQLV 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4616470 4621389 - Conep09aG0095900.1 Cone9ag0936 445099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0936 271 PANTHER SERUM RESPONSE FACTOR HOMOLOG 21 224 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone9ag0936 271 ProSiteProfiles K-box domain profile. 105 195 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone9ag0936 271 ProSiteProfiles MADS-box domain profile. 20 80 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone9ag0936 271 MobiDBLite consensus disorder prediction 248 262 - -
Cone9ag0936 271 CDD MADS_MEF2_like 21 93 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cone9ag0936 271 FunFam agamous-like MADS-box protein AGL11 32 114 - -
Cone9ag0936 271 MobiDBLite consensus disorder prediction 248 271 - -
Cone9ag0936 271 Pfam K-box region 104 189 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone9ag0936 271 SUPERFAMILY SRF-like 21 107 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone9ag0936 271 Gene3D - 33 113 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone9ag0936 271 Coils Coil 105 125 - -
Cone9ag0936 271 PRINTS MADS domain signature 42 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone9ag0936 271 PRINTS MADS domain signature 22 42 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone9ag0936 271 PRINTS MADS domain signature 57 78 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone9ag0936 271 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 29 76 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone9ag0936 271 SMART madsneu2 20 79 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag1577 Cone-Chr7:10800518 Cone9ag0936 Cone-Chr9:4616470 1.78E-17 dispersed
Cone8ag1021 Cone-Chr8:9485806 Cone9ag0936 Cone-Chr9:4616470 1.76E-21 dispersed
Cone9ag0936 Cone-Chr9:4616470 Cone9ag1445 Cone-Chr9:10720623 4.08E-31 dispersed
Cone10ag1416 Cone-Chr10:10986119 Cone9ag0936 Cone-Chr9:4616470 1.01E-77 wgd
Cone5ag1630 Cone-Chr5:11505545 Cone9ag0936 Cone-Chr9:4616470 8.96E-44 wgd
Cone6ag0933 Cone-Chr6:4798470 Cone9ag0936 Cone-Chr9:4616470 2.23E-157 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46845 PF00156 Pribosyltran 1.60E-18 CL0533 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0936 K09264 - cit:102617808 323.939