Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0947 ATGGAAGATACCTTCAACAACCCATTCATGATCAGTTCACATCATCAACCCGACGAGAATGACTCTCCCACCGAAGCCGGCTCTGAAACTCCTCCCTCCGCCTCCGCCACCAAGCTCACCTCCACTCCTTCTCCCAAAAAAAGCAGTAAAAGGGGGTTACATAAAAGAGTGGTGTCCGTACCAATCAAGGACGTAGAAGGATCCAAATTAAAGGGCGGCGAGATCACGAACAATACACCGCCGTCGGATTCTTGGGCCTGGAGAAAGTACGGTCAAAAGCCCATCAAAGGATCTCCTTACCCCAGAGGATATTATAAGTGCAGTAGCTCAAAGGGATGTCCGGCTAGAAAACAAGTGGAGAGAAGCAGTGAGGACCCCACTATGTTACTAATCACCTACTCCTGCGAACATAACCATCCTGGTCCTACGTCTAGAAACAGCAACGCCGCCGCAGCAAAGACTAGGAAACTCAGCGAAGTTATTGCAGTACCGGAACCCGAACCGGAGGAGAAGTTCACGGATCTGAGGGACGATCAGTTCAGCTGGTTCGTCGACATGGACACGACATCCTCGACGGTGTTGGAGAGCCCGATTTTTGCGGAGAGGACTACTAGTTCGATCGGCGACTTCTCTTCCGACCTGGCGATGTTTTTTCCAATGGAGGAGGAGGACGAGTCGCTGTTCGCCGATCTGGGAGAGTTGCCGGAGTGCTCCGTCGTGTTCCGCCGTGGAGGTGGAGGAAGTGGAGCCTTTCAGAGAAATGAGGAGCAACAACGCCAGATGTGCACCGCGACCCCACCTTGGTTTGGGACCAGTAGCTGA 822 52.8 MEDTFNNPFMISSHHQPDENDSPTEAGSETPPSASATKLTSTPSPKKSSKRGLHKRVVSVPIKDVEGSKLKGGEITNNTPPSDSWAWRKYGQKPIKGSPYPRGYYKCSSSKGCPARKQVERSSEDPTMLLITYSCEHNHPGPTSRNSNAAAAKTRKLSEVIAVPEPEPEEKFTDLRDDQFSWFVDMDTTSSTVLESPIFAERTTSSIGDFSSDLAMFFPMEEEDESLFADLGELPECSVVFRRGGGGSGAFQRNEEQQRQMCTATPPWFGTSS 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4708149 4709396 - Conep09aG0097000.1 Cone9ag0947 445110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0947 273 SMART WRKY_cls 81 141 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone9ag0947 273 MobiDBLite consensus disorder prediction 1 47 - -
Cone9ag0947 273 FunFam WRKY transcription factor 65 67 142 - -
Cone9ag0947 273 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 21 238 IPR044810 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cone9ag0947 273 MobiDBLite consensus disorder prediction 245 273 - -
Cone9ag0947 273 MobiDBLite consensus disorder prediction 251 273 - -
Cone9ag0947 273 SUPERFAMILY WRKY DNA-binding domain 77 142 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone9ag0947 273 Pfam WRKY DNA -binding domain 83 140 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone9ag0947 273 ProSiteProfiles WRKY domain profile. 82 142 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone9ag0947 273 Gene3D WRKY domain 72 143 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone9ag0947 273 MobiDBLite consensus disorder prediction 1 89 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1143 Cone-Chr6:8641222 Cone9ag0947 Cone-Chr9:4708149 3.98E-36 dispersed
Cone9ag0947 Cone-Chr9:4708149 Cone9ag1134 Cone-Chr9:7884428 1.66E-35 dispersed
Cone1ag0219 Cone-Chr1:1359210 Cone9ag0947 Cone-Chr9:4708149 3.25E-90 wgd
Cone5ag1648 Cone-Chr5:11645503 Cone9ag0947 Cone-Chr9:4708149 1.73E-86 wgd
Cone8ag1525 Cone-Chr8:11488264 Cone9ag0947 Cone-Chr9:4708149 7.23E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46847 PF02365 NAM 1.90E-38 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0947 - - - 0.0