Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0959 ATGGCGGATCCCAATAGAAAAACCCTTAACAACAACAAGAGCAAGAAAGAGAAAGACACTCCCTTCCTCCTCCTCGGCCGCTACGAGATCGGAAAACTCCTCGGCCATGGAACCTTCGCGAAAGTCTACCACGCTCGAAACATCAAAACCAACGAAGGCGTGGCAATCAAAGTGATCGACAAGGAGAAGATCCTAAAGAGCGGCTTAATCGCTCACATCAAGCGCGAGATCTCGACCCTCCGCCGCGTCCGCCACCCTAACATCGTCCAGCTCTTCGAAGTCATGGCCACGAAATCCAAGATCTACTTTGTCATGGAGTACGTACGCGGCGGCGAGCTCTTCAACAAAGTCGCTAAAGGCAGATTGAAAGAAGAGGTGGCACGGAAATACTTCCAGCAGTTAATCTCCGCCGTCGGATTCTGCCACGCGCGAGGAGTCTACCACCGTGACCTGAAACCTGAAAACCTCTTGCTTGACGAAAACGGCGATCTCAAAGTCTCCGATTTCGGACTTAGCGCGGTCTCCGATCAAATCCGGCAGGACGGTCTTTTCCACACGTTTTGTGGAACCCCTGCTTACGTGGCACCGGAAGTTCTTGCTCGGAAAGGGTATGAAGCCGGTAAGGTAGATATCTGGTCTTGTGGAGTAGTTTTATTTGTTCTAATGGCTGGTTATTTACCTTTCCAAGATCAAAATATCATGCTTATGTATAAGAAAATCTACAAGGGTGACTTTAGGTGTCCTAAATGGTTCTCACCGGAGTTAATCCGGCTTCTAACTCGCCTTCTTGATACGAATCCTGAAACACGGATAACAATCCCAGAAATCATGGAGACCAAATGGTTCAAAAAAGGGTTTAAACATATCAAGTTTTACATTGAAGATGATAGGCTTTGTAATGTTGAAGATAATGGTAATAATAATGGTAATGGTGATGATAGTGATTTGGATTCCTTACCGGACTCTGAACCCGAAGCAGAGGTTAGGAGTAGGAGAGTGGGGTCAATGCCAAGGCCGGCTAGTTTGAATGCATTTGACATTATATCGTTTTCGCCCGGTTTCGATCTCTCGGGCTTGTTTGAAGAAGGTGGGGAAGATGCTAGGATTGTTTCGGGAGCTCCAGTTTCTAAGATTATATCGAAATTGGAGGAGATTGCTCAGTTGGTTAGTTTTACGGTCAGGAAGAATGACTGTAGGGTGAGCCTGGAGGGATCAAGGGAAGGAGTGAAGGGTCCTTTATCGATTGCAGCTGAGATTTTTGAGTTGACTCCGTCTTTAGTTGTGGTGGAGGTTAAGAAGAAAGGAGGAGATAAAATGGAGTATGAACAGTTCTGTAGCAAGGAATTGAGGCCGGGTTTGGAGAATTTGGCCATAGAAGAAGCTGCTTCTTCTGTTTCTTCTTCTTCTCGCGAGTATGTAGTACCTTCAGATACTGAATGA 1440 46.32 MADPNRKTLNNNKSKKEKDTPFLLLGRYEIGKLLGHGTFAKVYHARNIKTNEGVAIKVIDKEKILKSGLIAHIKREISTLRRVRHPNIVQLFEVMATKSKIYFVMEYVRGGELFNKVAKGRLKEEVARKYFQQLISAVGFCHARGVYHRDLKPENLLLDENGDLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYEAGKVDIWSCGVVLFVLMAGYLPFQDQNIMLMYKKIYKGDFRCPKWFSPELIRLLTRLLDTNPETRITIPEIMETKWFKKGFKHIKFYIEDDRLCNVEDNGNNNGNGDDSDLDSLPDSEPEAEVRSRRVGSMPRPASLNAFDIISFSPGFDLSGLFEEGGEDARIVSGAPVSKIISKLEEIAQLVSFTVRKNDCRVSLEGSREGVKGPLSIAAEIFELTPSLVVVEVKKKGGDKMEYEQFCSKELRPGLENLAIEEAASSVSSSSREYVVPSDTE 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4798124 4799823 + Conep09aG0098900.1 Cone9ag0959 445122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0959 479 FunFam Non-specific serine/threonine protein kinase 16 321 - -
Cone9ag0959 479 Pfam Protein kinase domain 28 282 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag0959 479 FunFam Non-specific serine/threonine protein kinase 20 107 - -
Cone9ag0959 479 SMART serkin_6 28 282 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag0959 479 CDD CIPK_C 343 453 - -
Cone9ag0959 479 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone9ag0959 479 ProSiteProfiles NAF domain profile. 337 361 IPR018451 GO:0007165(InterPro)
Cone9ag0959 479 FunFam Non-specific serine/threonine protein kinase 339 457 - -
Cone9ag0959 479 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 14 453 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cone9ag0959 479 Gene3D Kinase associated domain 1, KA1 337 458 - -
Cone9ag0959 479 ProSiteProfiles Protein kinase domain profile. 28 282 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag0959 479 ProSitePatterns Protein kinases ATP-binding region signature. 34 57 IPR017441 GO:0005524(InterPro)
Cone9ag0959 479 Gene3D Transferase(Phosphotransferase) domain 1 20 318 - -
Cone9ag0959 479 MobiDBLite consensus disorder prediction 303 335 - -
Cone9ag0959 479 Pfam NAF domain 339 395 IPR004041 GO:0007165(InterPro)
Cone9ag0959 479 CDD STKc_SnRK3 27 281 - -
Cone9ag0959 479 SUPERFAMILY Protein kinase-like (PK-like) 24 290 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag0077 Cone-Chr7:332438 Cone9ag0959 Cone-Chr9:4798124 7.27E-167 dispersed
Cone7ag0630 Cone-Chr7:3198882 Cone9ag0959 Cone-Chr9:4798124 6.11E-116 dispersed
Cone9ag0959 Cone-Chr9:4798124 Cone15ag1163 Cone-Chr15:9420857 5.24E-44 dispersed
Cone1ag0212 Cone-Chr1:1285445 Cone9ag0959 Cone-Chr9:4798124 3.35E-270 wgd
Cone5ag1652 Cone-Chr5:11710174 Cone9ag0959 Cone-Chr9:4798124 9.68E-272 wgd
Cone6ag0951 Cone-Chr6:4980591 Cone9ag0959 Cone-Chr9:4798124 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83183 PF00312 Ribosomal_S15 3.40E-14 CL0600 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0959 - - - 0.0