Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone9ag0968 | ATGGACAGCCAAGATGAGCAAGATCATATTAAGCTATTTGGTAAGACAATAACACTGCAAAATAGGCAACTAAAAGATGAAGCTAAAACAGCAGATCATCATGAAACGGTGGATAAGAGACCAGAAAAGATTATTCCTTGTCCAAGATGCAAGAGCATGGAGACCAAGTTTTGTTACTTCAATAACTATAACGTTAACCAGCCAAGGCATTTTTGTAAGGGCTGCCAGAGGTATTGGACTGCAGGTGGAGCCCTCCGGAACGTGCCGGTTGGGGCCGGCCGCCGGAAAACCAAGCCGCCTTGTCATGGGCTTTCTGGATTGTCTGATAGTTGCCTCATTGATGCATCTGGGATGGTTCACAAGTTTGAGTTAGACGGGATGGTGAAGGAGTGGCATGTTATGGCGGCAGATGACGGTTTCCGGCAAGTCTTCCCGGCAAAGAGGCGAAAGAGCATGGAACAAGCAGGTCAAGCTTATTGA | 480 | 47.08 | MDSQDEQDHIKLFGKTITLQNRQLKDEAKTADHHETVDKRPEKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKTKPPCHGLSGLSDSCLIDASGMVHKFELDGMVKEWHVMAADDGFRQVFPAKRRKSMEQAGQAY | 159 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 4874414 | 4874893 | + | Conep09aG0099800.1 | Cone9ag0968 | 445131 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone9ag0968 | 159 | ProSiteProfiles | Zinc finger Dof-type profile. | 45 | 99 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
| Cone9ag0968 | 159 | PANTHER | CYCLIC DOF FACTOR 2 | 25 | 103 | IPR045174 | GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0006355(InterPro) | |
| Cone9ag0968 | 159 | ProSitePatterns | Zinc finger Dof-type signature. | 47 | 83 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
| Cone9ag0968 | 159 | Pfam | Dof domain, zinc finger | 43 | 98 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone7ag0510 | Cone-Chr7:2346198 | Cone9ag0968 | Cone-Chr9:4874414 | 3.13E-33 | dispersed | |
| Cone9ag0968 | Cone-Chr9:4874414 | Cone9ag1003 | Cone-Chr9:5214089 | 1.15E-27 | dispersed | |
| Cone6ag0960 | Cone-Chr6:5082903 | Cone9ag0968 | Cone-Chr9:4874414 | 6.65E-108 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 46849 | None | None | None | None | Cone | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone9ag0968 | - | - | - | 0.0 |