Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone9ag0982 | ATGGCTTCATCAAATAGACACTGGCCCAGCATGTTCAAATCCAAACCTTGCAACACTCACCACCAATGGCAGCACCATGACATCAACCAAGCTCTCATCTCATCAAACCCAGCTTGCCTCAAACCACCGTACACTAATTCAGTTGGTGGGTGTGAGGAACGCAGTCCGGAGCCGAAACCGAGGTGGAACCCTAAACCGGAGCAAATTCGGATACTCGAAGCGATCTTTAACTCCGGGATGGTGAATCCTCCGAGGGATGAAATAAGGAAAATTAGGACTCAATTGCAAGAATTTGGACAAGTTGGTGATGCCAATGTCTTTTACTGGTTCCAGAACCGTAAATCTAGAAGCAAACACAAACTCCGCCACCTCCAAAACTCAAGAAATCAATCGCCATCCCAATCAACCCTAACCCCTCCTACGCTGACTAATGACAACAATATTGTCACAAACCATTCATGTTCTTCCTCCTCATCTTCTTCTTCAAACAAATCTTCACCCACAAAAGCAACCAAGACCAAGACCACTTGCACTTCCTGTACTCCTAATACAACCTTTTCTATGGGCTTCGCTAATGTGATGTCACCACATGACGTTTCAAATTCTCCAACCGGTTCAGTGAATAATGACCAACAAACATATTTCCAGTCCCATAATAACAACAGTAATGAATTCCCACATGAACCCTTTTTCTTCCCGGTGCAAATGGGCAATGTGCAGGGGTCGGATCGTAATTTCTCACAAGGGTTTTCCTTCCCTCACGAGTTCTCTACTGCTGTTGGGCCTGACTGCACTAATCTTTTGCTGAGGGAGATAGTTAAACATGGAGATCATCATCATCACACAAAGAAATTAGAATCAGAAGAGAGAGATATGGTGATGATGAAAAGCATTCACCCAGCCGTTGCACAGTTGAGTTATGCTAATCATTTGAACAGTAGTACTACTTCTACTACTCCTCCCCAAGCTTCGACCATTCATACTACTGTTACTTCTTCGATGCCAACCACTGTTACTGTTCCATCCCCTTTCAACCAAATCCCAGGTCAGAAACTTTTTTATTAA | 1065 | 43.85 | MASSNRHWPSMFKSKPCNTHHQWQHHDINQALISSNPACLKPPYTNSVGGCEERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRTQLQEFGQVGDANVFYWFQNRKSRSKHKLRHLQNSRNQSPSQSTLTPPTLTNDNNIVTNHSCSSSSSSSSNKSSPTKATKTKTTCTSCTPNTTFSMGFANVMSPHDVSNSPTGSVNNDQQTYFQSHNNNSNEFPHEPFFFPVQMGNVQGSDRNFSQGFSFPHEFSTAVGPDCTNLLLREIVKHGDHHHHTKKLESEERDMVMMKSIHPAVAQLSYANHLNSSTTSTTPPQASTIHTTVTSSMPTTVTVPSPFNQIPGQKLFY | 354 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 5010804 | 5012041 | - | Conep09aG0101300.1 | Cone9ag0982 | 445145 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone9ag0982 | 354 | ProSiteProfiles | 'Homeobox' domain profile. | 55 | 120 | IPR001356 | GO:0003677(InterPro) | |
| Cone9ag0982 | 354 | MobiDBLite | consensus disorder prediction | 119 | 178 | - | - | |
| Cone9ag0982 | 354 | MobiDBLite | consensus disorder prediction | 126 | 178 | - | - | |
| Cone9ag0982 | 354 | PANTHER | WUSCHEL-RELATED HOMEOBOX 9 | 1 | 349 | IPR044557 | GO:0003700(InterPro)|GO:0050793(InterPro) | |
| Cone9ag0982 | 354 | FunFam | WUSCHEL-related homeobox 11 | 59 | 126 | - | - | |
| Cone9ag0982 | 354 | SUPERFAMILY | Homeodomain-like | 55 | 123 | IPR009057 | - | |
| Cone9ag0982 | 354 | CDD | homeodomain | 58 | 120 | IPR001356 | GO:0003677(InterPro) | |
| Cone9ag0982 | 354 | Gene3D | - | 59 | 125 | - | - | |
| Cone9ag0982 | 354 | Pfam | Homeodomain | 59 | 118 | IPR001356 | GO:0003677(InterPro) | |
| Cone9ag0982 | 354 | SMART | HOX_1 | 57 | 124 | IPR001356 | GO:0003677(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone6ag0982 | Cone-Chr6:5349638 | Cone9ag0982 | Cone-Chr9:5010804 | 1.08E-181 | dispersed | |
| Cone9ag0982 | Cone-Chr9:5010804 | Cone19ag0299 | Cone-Chr19:2200452 | 1.79E-24 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 46851 | PF01428 | zf-AN1 | 8.60E-10 | No_clan | Cone | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone9ag0982 | - | - | - | 0.0 |