Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0982 ATGGCTTCATCAAATAGACACTGGCCCAGCATGTTCAAATCCAAACCTTGCAACACTCACCACCAATGGCAGCACCATGACATCAACCAAGCTCTCATCTCATCAAACCCAGCTTGCCTCAAACCACCGTACACTAATTCAGTTGGTGGGTGTGAGGAACGCAGTCCGGAGCCGAAACCGAGGTGGAACCCTAAACCGGAGCAAATTCGGATACTCGAAGCGATCTTTAACTCCGGGATGGTGAATCCTCCGAGGGATGAAATAAGGAAAATTAGGACTCAATTGCAAGAATTTGGACAAGTTGGTGATGCCAATGTCTTTTACTGGTTCCAGAACCGTAAATCTAGAAGCAAACACAAACTCCGCCACCTCCAAAACTCAAGAAATCAATCGCCATCCCAATCAACCCTAACCCCTCCTACGCTGACTAATGACAACAATATTGTCACAAACCATTCATGTTCTTCCTCCTCATCTTCTTCTTCAAACAAATCTTCACCCACAAAAGCAACCAAGACCAAGACCACTTGCACTTCCTGTACTCCTAATACAACCTTTTCTATGGGCTTCGCTAATGTGATGTCACCACATGACGTTTCAAATTCTCCAACCGGTTCAGTGAATAATGACCAACAAACATATTTCCAGTCCCATAATAACAACAGTAATGAATTCCCACATGAACCCTTTTTCTTCCCGGTGCAAATGGGCAATGTGCAGGGGTCGGATCGTAATTTCTCACAAGGGTTTTCCTTCCCTCACGAGTTCTCTACTGCTGTTGGGCCTGACTGCACTAATCTTTTGCTGAGGGAGATAGTTAAACATGGAGATCATCATCATCACACAAAGAAATTAGAATCAGAAGAGAGAGATATGGTGATGATGAAAAGCATTCACCCAGCCGTTGCACAGTTGAGTTATGCTAATCATTTGAACAGTAGTACTACTTCTACTACTCCTCCCCAAGCTTCGACCATTCATACTACTGTTACTTCTTCGATGCCAACCACTGTTACTGTTCCATCCCCTTTCAACCAAATCCCAGGTCAGAAACTTTTTTATTAA 1065 43.85 MASSNRHWPSMFKSKPCNTHHQWQHHDINQALISSNPACLKPPYTNSVGGCEERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRTQLQEFGQVGDANVFYWFQNRKSRSKHKLRHLQNSRNQSPSQSTLTPPTLTNDNNIVTNHSCSSSSSSSSNKSSPTKATKTKTTCTSCTPNTTFSMGFANVMSPHDVSNSPTGSVNNDQQTYFQSHNNNSNEFPHEPFFFPVQMGNVQGSDRNFSQGFSFPHEFSTAVGPDCTNLLLREIVKHGDHHHHTKKLESEERDMVMMKSIHPAVAQLSYANHLNSSTTSTTPPQASTIHTTVTSSMPTTVTVPSPFNQIPGQKLFY 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5010804 5012041 - Conep09aG0101300.1 Cone9ag0982 445145

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0982 354 ProSiteProfiles 'Homeobox' domain profile. 55 120 IPR001356 GO:0003677(InterPro)
Cone9ag0982 354 MobiDBLite consensus disorder prediction 119 178 - -
Cone9ag0982 354 MobiDBLite consensus disorder prediction 126 178 - -
Cone9ag0982 354 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 349 IPR044557 GO:0003700(InterPro)|GO:0050793(InterPro)
Cone9ag0982 354 FunFam WUSCHEL-related homeobox 11 59 126 - -
Cone9ag0982 354 SUPERFAMILY Homeodomain-like 55 123 IPR009057 -
Cone9ag0982 354 CDD homeodomain 58 120 IPR001356 GO:0003677(InterPro)
Cone9ag0982 354 Gene3D - 59 125 - -
Cone9ag0982 354 Pfam Homeodomain 59 118 IPR001356 GO:0003677(InterPro)
Cone9ag0982 354 SMART HOX_1 57 124 IPR001356 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0982 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0982 Cone-Chr6:5349638 Cone9ag0982 Cone-Chr9:5010804 1.08E-181 dispersed
Cone9ag0982 Cone-Chr9:5010804 Cone19ag0299 Cone-Chr19:2200452 1.79E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g165 . . Bda02g00504 . . Bpe01g00455 . . . . Cma03g01305 Cma07g00209 Car03g01165 Car07g00176 . . Cpe10g00163 Bhi03g00342 . . . . . . Cla01g02289 Cam01g2401 Cec04g2047 Cco04g2125 Clacu01g2422 Cmu01g2286 Cre04g1954 . . Cone6ag0982 Cone9ag0982 Lsi01g00272 Csa06g03668 . Cme08g00256 . Blo14g00416 . . . . . . . Cmo03g01301 Cmo07g00209 . . . . Cpe19g01046 . . . . . . . . . . . . . . . . . Chy02g00262 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone8ag0901 . 31 163 Wox Gene Family AT1G20710 58.1 1.6e-36 150.2
Cone12ag0872 . 32 164 Wox Gene Family AT1G20710 58.1 1.6e-36 150.2
Cone12ag0872 . 30 281 Wox Gene Family AT4G35550 55.3 6.3e-73 271.6
Cone8ag0901 . 1 280 Wox Gene Family AT4G35550 52.3 2.4e-72 269.6
Cone20ag0200 . 7 167 Wox Gene Family AT1G46480 65.9 4.0e-53 205.3
Cone17ag0854 . 7 167 Wox Gene Family AT1G46480 66.5 1.5e-52 203.4
Cone9ag0982 . 1 141 Wox Gene Family AT5G45980 56.7 1.0e-40 164.9
Cone9ag0982 . 1 126 Wox Gene Family AT2G33880 77.2 3.0e-47 186.8
Cone20ag0200 . 7 167 Wox Gene Family AT1G46480 65.9 4.0e-53 205.3
Cone17ag0854 . 7 167 Wox Gene Family AT1G46480 66.5 1.5e-52 203.4
Cone9ag0982 . 1 141 Wox Gene Family AT5G45980 56.7 1.0e-40 164.9
Cone9ag0982 . 1 126 Wox Gene Family AT2G33880 77.2 3.0e-47 186.8
Cone8ag0901 . 31 163 Wox Gene Family AT1G20710 58.1 1.6e-36 150.2
Cone12ag0872 . 32 164 Wox Gene Family AT1G20710 58.1 1.6e-36 150.2
Cone12ag0872 . 30 281 Wox Gene Family AT4G35550 55.3 6.3e-73 271.6
Cone8ag0901 . 1 280 Wox Gene Family AT4G35550 52.3 2.4e-72 269.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008426 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46851 PF01428 zf-AN1 8.60E-10 No_clan Cone TF