Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0989 ATGGGTGCTTTAATCGATCTGAATACGACTGAGGAGGATGAAACGCCGTCGTCTGGTGGTTCCTCTGCTTCTTCCTTCTCCTCTTCTGTTTCTGCTTCTGCTTGCAATTATTCTCCCTCCTCTCCTTCTTCCTCTTCCTCTACCTCTGTTTGCTTGGAGCTATGGCACGCTTGTGCGGGCCCACTTATCTCTTTGCCGAAGAAAGGGAGTATTGTAGTGTATTTGCCTCAAGGCCACTTTGAAAAGGTTCAAGATCTTCCCCCTTCAGCTTATGATCTCCCCCCTCAGCTCCTCTGTCGAGTTGTGGATGTTCACCTCCATGCAGAGGTGGGTACTGATGAGGTGTATGCTCAGGTGTCACTGTTTCCTGAAACTGAGCGGCAAAATGCTCACAAATTGCTTGAAGGAGAGGTGACTATGGAAAGTGAGGAGGAAGACCTTGAAGCCGTAGGAAAGTCCACAACTCCGCACATGTTCTGTAAAACCCTCACGGCCTCTGATACTAGTACTCATGGAGGTTTCTCTGTTCCTCGGCGAGCTGCTGAGGACTGCTTTCCACCCTTGGACTATAATCAACAAAGACCTTTTCAAGAGCTTGTAGCTAAGGATTTGCATGGGCTGGAATGGAAATTCCGACATATCTATAGGGGGCAGCCTAGAAGGCATTTACTAACGACTGGATGGAGTGCGTTTGTGAACAAGAAGAAGCTTGTATCTGGAGACGCTGTTCTTTTCCTTAGGGGTGAAGATGGAGGCCTAAGACTGGGGATCCGAAGAGCTGCCCATGTTAAAAGTGGGTCCACATTTCCCAGTTTATCTGTCCAGCAGCAATCAAGCACTAGTTCTCCCATGGATGTTATTAATGCTCTCTCTAGGAAAACTGCCTTTAGTGTCTACTACGATCCAAGGGCCGGCTCTTCTGAGTTCATTGTGCCTTTGAGCAAATTCTTGAAGAGCATTAATCATCCTTTCTCTGTTGGGATGAGGTTCAAGATGTGTTTTGAAACAGAAGATGCTTCTGAGAGAAGATACACAGGACTGATTACTGGAATCAGCGATTTGGATTCTTTAAGATGGCCTAGTTCGAAGTGGAAATGTGTCATGGTTAGGTGGGATTCTTTAGAGATAAATAGGCATGGAAGGGTTTCACCATGGGAGATCGAGCCCTCTGGTTCAGCCTCCAGGCCCCACAGTTTAATTGCATCTGGTGTGAAGAGAACCCGGACTTCACTTCCTTTCTCAAAACCTGAGATTCCAGTTCCAAATGGGATTGGAGCTTTAGACTTTGGGGAATCTTCAAGATTCCATAAGGTCTTGCAAGGTCAAGAAATTTTTGATTACTGGTATCATCAATACCCACCCGAAAAAGGCAGTAGGCCTTTTACTGGTCTATTAGGAAATGGTCTAAGAAACCAGCTCTTAAACTCTAGCACCACTTCCTCCAAAGGCACTGGCTTTGGTGAATCTTTAAGGTTCCATAAGGTCTTGCAAGGTCAAGAAATATTCCCTATCCCTCCTCCAATTGGACGTCCCGGTCCTTCTACCGGCACAGCCCGACCGGCGTGGCCCCATTTCATTTCGGGTGGCTCAAATTCACATGGATGGCCCTCAGGCCCACCGGGACAACTATCTTCACCTTCCTCTGTGTTAATGTTCCAACAAGCAAACGGTTCGGTTCCAAGCTTTGGTTCGTACTATAGTGGTAATAATAATATTAATGCAGATGAGGCAAGAATTGTCAGAAGATCTCCCTACTTGTCTGAGACATATGTGAATAAGGAGAGTCTTCCAAAGGGAGGTATGACGGGTTTTCTGTTGTCGAATAATAAGAGCAATCATCACTCTGGTATTTCAGGCAATAAGGAGTTAGTTTCTTCATGCAAACCGAGCTGTAGACTTTTTGGTTTCTCATTGACTGAGGAAAAGAATGTTGTGAATGAGGACAAACCGAGCTCATTCCCATCTCCTATGAAGCCTGTGGATTCTTCTTTCTTGTCAAATGTTGGTGGGCAGTTTCATTCAGGGCCACCGTTGATGAACAAGGCACTTGGAAGCAATTGTACCAAAGGAGCTTTGCAGTACTGTGTTGCTAATTCTAGTTCTTACTATTGA 2112 45.79 MGALIDLNTTEEDETPSSGGSSASSFSSSVSASACNYSPSSPSSSSSTSVCLELWHACAGPLISLPKKGSIVVYLPQGHFEKVQDLPPSAYDLPPQLLCRVVDVHLHAEVGTDEVYAQVSLFPETERQNAHKLLEGEVTMESEEEDLEAVGKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYNQQRPFQELVAKDLHGLEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGGLRLGIRRAAHVKSGSTFPSLSVQQQSSTSSPMDVINALSRKTAFSVYYDPRAGSSEFIVPLSKFLKSINHPFSVGMRFKMCFETEDASERRYTGLITGISDLDSLRWPSSKWKCVMVRWDSLEINRHGRVSPWEIEPSGSASRPHSLIASGVKRTRTSLPFSKPEIPVPNGIGALDFGESSRFHKVLQGQEIFDYWYHQYPPEKGSRPFTGLLGNGLRNQLLNSSTTSSKGTGFGESLRFHKVLQGQEIFPIPPPIGRPGPSTGTARPAWPHFISGGSNSHGWPSGPPGQLSSPSSVLMFQQANGSVPSFGSYYSGNNNINADEARIVRRSPYLSETYVNKESLPKGGMTGFLLSNNKSNHHSGISGNKELVSSCKPSCRLFGFSLTEEKNVVNEDKPSSFPSPMKPVDSSFLSNVGGQFHSGPPLMNKALGSNCTKGALQYCVANSSSYY 703
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5080316 5084283 + Conep09aG0102000.1 Cone9ag0989 445152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0989 703 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 49 651 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone9ag0989 703 Gene3D - 323 396 - -
Cone9ag0989 703 FunFam Auxin response factor 323 394 - -
Cone9ag0989 703 MobiDBLite consensus disorder prediction 1 38 - -
Cone9ag0989 703 MobiDBLite consensus disorder prediction 10 38 - -
Cone9ag0989 703 Gene3D - 157 261 IPR015300 -
Cone9ag0989 703 Pfam B3 DNA binding domain 159 260 IPR003340 GO:0003677(InterPro)
Cone9ag0989 703 SMART B3_2 159 261 IPR003340 GO:0003677(InterPro)
Cone9ag0989 703 ProSiteProfiles B3 DNA-binding domain profile. 159 261 IPR003340 GO:0003677(InterPro)
Cone9ag0989 703 SUPERFAMILY DNA-binding pseudobarrel domain 153 266 IPR015300 -
Cone9ag0989 703 CDD B3_DNA 157 259 IPR003340 GO:0003677(InterPro)
Cone9ag0989 703 FunFam Auxin response factor 157 261 - -
Cone9ag0989 703 Pfam Auxin response factor 287 367 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0715 Cone-Chr1:6611878 Cone9ag0989 Cone-Chr9:5080316 7.69E-150 dispersed
Cone5ag1219 Cone-Chr5:5588367 Cone9ag0989 Cone-Chr9:5080316 1.01E-146 dispersed
Cone9ag0869 Cone-Chr9:4229505 Cone9ag0989 Cone-Chr9:5080316 4.66E-99 dispersed
Cone6ag0985 Cone-Chr6:5395159 Cone9ag0989 Cone-Chr9:5080316 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46853 PF00082 Peptidase_S8 6.10E-36 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0989 K14486 - csv:101220018 741.88