Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0992 ATGCATCCTAACATCTTCACGTGCTCCTTCTTCTTCTTCTTCTTCTTTGTCGTGTTTAACAGTTCTCTTCTCTCCCTCTCTCTGAACCAAGAAGCTCTCTACCTCCAAACAGTAAAGCTCTCCCTCGACGATCCAGACTCCGTCCTCACCTCCTGGACCAACAGCGACCACCGTGATGACGTGACGCCCTGCACCTGGTACGGCGTCCGCTGCAACTCAGCAAGTCGCTCCGTCGCCTCACTCGACCTCTCCAACTCAAACCTCGCCGGACCTTTCCCGTCTCTCCTCTGCCGTCTACGTAACCTTACTTCCATCTCTCTCTACAACAACTCCATCAACTCCACTCTACCGTCGGATCTCTCTGCTTGTCAGAATCTCCAGCACCTCGATCTCGGGCAGAACCTCCTCACCGGTCCCCTCCCTAGCACTCTCTCCGACCTCCCTAACCTCCGTTACTTGGACCTAAGCGGGAACAATTTCTCGGGCGATATACCGCAGAGTTTTGGCGAGTTTCAAAATCTCGAGGTTCTCTCGCTCGTCTCGAATCTTCTCGACGGTCCGTTACCGGCATTTCTCGGCAACGTCACGACCCTCAAAATGCTCAACCTCTCGTACAACCCGTATCTCCCGGGCCGGATCCCACCTGAATTCGGTAACTTGACCAACCTCGAGGTGTTATGGCTCAGTCAAAGTAACTTAATCGGAGAGATTCCTGACTCGCTGAGTCGACTCAAAAGACTCACCGATCTAGACCTCGCGCTCAACAGCCTCCAGGGTTCGATTCCAAGTTCACTCACTGAGTTAACCAGTGTGGTTCAGATCGAGCTCTATAACAACTCGCTCACCGGCGAATTGCCGCCTGGATTTTCAGCAATGATTTCACTGAGAAAATTTGATGCGTCCATGAACAAGTTAACGGGTACGATTCCTGACGAGTTGTGTCAGCTACCATTGGAGAGTCTAAACCTGTACGAGAATCAGTTGGAAGGAGAGTTTCCGGAAAGCATTTCGAGCTCGTCGGAATTGTACGAGCTTAGGCTGTTCGGAAACCGATTATCCGGTGAGTTACCAAGAAATCTCGGGAAAAATTCTCCTCTGAAATGGGTTGATATTTCAGATAATCAGTTCTCAGGTGAGATTCCGGCCACTTTGTGTGAAAACGGGGTATTAGAAGAGCTGCTGATTCTAAACAACAGGCTATCCGGTAAGCTTCCAGAGAATTTAGGCGAGTGCTGGAGTTTGAGCCGTGTCAGATTAAGTGGCAATCAGTTTTCCGGTGAAGTCCCGGCAGGATTCTGGGGACTTTCAAATGTGTATCTTCTAGAACTTGTTGACAACTCATTTTCAGGTCAAATTGAAAAGACAATTGCAAGTGCCAAGAGTCTTTCGGTCCTGAAAATTTCGAGGAATAACTTCACCGGAATAATACCAGAGGAAATTGGAATTTTGGAAAATCTTATAGAATTTTCGGGGAGTGATAACATGCTAAGTGGGTCTTTACCTATCAGCATTGTTAATCTTCATAAGCTTTCGAGCTTAAATCTTCATAATAATGAGCTATCAGGCAAGATTCCAAGCGGGATCAAATCCTTGAAGAATCTGAACGAGCTCAATCTGGCTAACAATGAGTTCTTTGGTGAAATTCCTAATGAAATTGGGAGCATGCCTGTGCTTAATTACCTTGATCTTTCTAGTAATCAGTTTTCCGGGAAAATCCCATATGTTTTACAGGACTTGAAGCTAAACCTGCTCAACTTGTCAAACAATCTTCTGTCAGGTGAGCTTCCACCATTATTTTCGAAAGAAATGTATAGATACAGCTTTCTTGGCAACCCTGGTTTGTGTGGAGTTGCAGACAGTTTATGTGATCGCAAGACTAGAACTAGAAACCGAAGCTATGAATGGTTGTTCCGGTCCATATTCATGCTTGCAGTTCTAGTTTTTGTTGTAGGCGTCATCTGGTTCTTATTGAAGTACAAGAAATTCAAAAACGCAAAGCGAGCGATGGATAAATCGAAATGGACGTTAATGTCATTCCACAAATTGAGTTTTTGTGAAAAAGAGATCTTAGATTGTCTTGACGAAGATAACGTAATTGGCAGTGGATCTTCCGGAAAGGTTTACAAAGCTGTGCTAATTAATGGTGAAGCTGTTGCAGTAAAGAAGCTTTGGACCAATACAAAAAAGGAGAGTGAAAATGGTGATATAGAGAAAGTTCAAGTTCAATTTAGAGACAATGGGTTTGAAGCAGAGGTTGAGACTTTAGGGAAAATTAGGCACAAGAACATAGTTAAATTATGGTGTTGTTGCTCGACTAGAGATTGTAAGCTTTTGGTTTATGAGTACATGCCTAATGGAAGTTTGGGCGATTTGCTTCATAGTAGTAAAGCTGGGCTACTGCATTGGCCCATTAGGTATAAGATTGCTTTGGATTCAGCTGAAGGGCTTTCTTATCTCCATCACGATTGTGTCCCGGCTATAGTTCATAGAGATGTCAAATCCAACAACATCTTGTTGGATGTAGATTTTGGCGCAAGAGTGGCCGATTTTGGAGTGGCTAAGGAAGTGGATTCTTCCAGTAAAGGGCCTAAATCGATGTCTGTTATTGCCGGTTCTTGTGGGTACATTGCCCCAGAATATGCTTATACGTTGAGGGTCAATGAGAAGAGCGATATATACAGTTTCGGTGTGGTGATCCTTGAATTGGTGACGGGGAGGCTTCCGATCGACCCGGAATTTGGGGAAAAGGATTTGGTGAAATGGGTTTGTACCACATTGGATCAAAAGGGTGTAGATCATGTGCTAGACCCTAAGCTTGATATGTGTTATAAGGAAGAAATATGCAAAGTACTCAATATCGGGCTTCTTTGCACGAGCCCGCTTCCGATTAACCGCCCGTCCATGAGGAGGGTGGTTAAAATGTTGCAAGAAGTGAATGTGGAGAATCAGTCGAGTAATTCTAAGAAAGACGGGAAGCTAACTCCGTACTTTTACGAGGATGCTTCGGATCACGGGAGTGTAGCTTGA 3027 44.96 MHPNIFTCSFFFFFFFVVFNSSLLSLSLNQEALYLQTVKLSLDDPDSVLTSWTNSDHRDDVTPCTWYGVRCNSASRSVASLDLSNSNLAGPFPSLLCRLRNLTSISLYNNSINSTLPSDLSACQNLQHLDLGQNLLTGPLPSTLSDLPNLRYLDLSGNNFSGDIPQSFGEFQNLEVLSLVSNLLDGPLPAFLGNVTTLKMLNLSYNPYLPGRIPPEFGNLTNLEVLWLSQSNLIGEIPDSLSRLKRLTDLDLALNSLQGSIPSSLTELTSVVQIELYNNSLTGELPPGFSAMISLRKFDASMNKLTGTIPDELCQLPLESLNLYENQLEGEFPESISSSSELYELRLFGNRLSGELPRNLGKNSPLKWVDISDNQFSGEIPATLCENGVLEELLILNNRLSGKLPENLGECWSLSRVRLSGNQFSGEVPAGFWGLSNVYLLELVDNSFSGQIEKTIASAKSLSVLKISRNNFTGIIPEEIGILENLIEFSGSDNMLSGSLPISIVNLHKLSSLNLHNNELSGKIPSGIKSLKNLNELNLANNEFFGEIPNEIGSMPVLNYLDLSSNQFSGKIPYVLQDLKLNLLNLSNNLLSGELPPLFSKEMYRYSFLGNPGLCGVADSLCDRKTRTRNRSYEWLFRSIFMLAVLVFVVGVIWFLLKYKKFKNAKRAMDKSKWTLMSFHKLSFCEKEILDCLDEDNVIGSGSSGKVYKAVLINGEAVAVKKLWTNTKKESENGDIEKVQVQFRDNGFEAEVETLGKIRHKNIVKLWCCCSTRDCKLLVYEYMPNGSLGDLLHSSKAGLLHWPIRYKIALDSAEGLSYLHHDCVPAIVHRDVKSNNILLDVDFGARVADFGVAKEVDSSSKGPKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGRLPIDPEFGEKDLVKWVCTTLDQKGVDHVLDPKLDMCYKEEICKVLNIGLLCTSPLPINRPSMRRVVKMLQEVNVENQSSNSKKDGKLTPYFYEDASDHGSVA 1008
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5100982 5104886 - Conep09aG0102300.1 Cone9ag0992 445155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0992 1008 Pfam Leucine Rich Repeat 413 435 IPR001611 GO:0005515(InterPro)
Cone9ag0992 1008 Pfam Leucine Rich Repeat 581 600 IPR001611 GO:0005515(InterPro)
Cone9ag0992 1008 Pfam Leucine Rich Repeat 461 481 IPR001611 GO:0005515(InterPro)
Cone9ag0992 1008 Pfam Leucine Rich Repeat 558 579 IPR001611 GO:0005515(InterPro)
Cone9ag0992 1008 Pfam Leucine Rich Repeat 509 531 IPR001611 GO:0005515(InterPro)
Cone9ag0992 1008 Pfam Leucine Rich Repeat 533 555 IPR001611 GO:0005515(InterPro)
Cone9ag0992 1008 Pfam Leucine Rich Repeat 366 385 IPR001611 GO:0005515(InterPro)
Cone9ag0992 1008 Pfam Leucine Rich Repeat 318 338 IPR001611 GO:0005515(InterPro)
Cone9ag0992 1008 Pfam Leucine Rich Repeat 294 316 IPR001611 GO:0005515(InterPro)
Cone9ag0992 1008 Pfam Leucine Rich Repeat 222 244 IPR001611 GO:0005515(InterPro)
Cone9ag0992 1008 ProSitePatterns Serine/Threonine protein kinases active-site signature. 827 839 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone9ag0992 1008 SUPERFAMILY Protein kinase-like (PK-like) 683 976 IPR011009 -
Cone9ag0992 1008 SMART LRR_sd22_2 171 197 - -
Cone9ag0992 1008 SMART LRR_sd22_2 244 270 - -
Cone9ag0992 1008 SMART LRR_sd22_2 99 122 - -
Cone9ag0992 1008 SMART LRR_sd22_2 507 536 - -
Cone9ag0992 1008 SMART LRR_sd22_2 123 149 - -
Cone9ag0992 1008 SMART LRR_sd22_2 220 243 - -
Cone9ag0992 1008 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 28 195 - -
Cone9ag0992 1008 ProSiteProfiles Leucine-rich repeat profile. 222 245 IPR001611 GO:0005515(InterPro)
Cone9ag0992 1008 Gene3D Ribonuclease Inhibitor 28 191 IPR032675 -
Cone9ag0992 1008 ProSitePatterns Protein kinases ATP-binding region signature. 699 722 IPR017441 GO:0005524(InterPro)
Cone9ag0992 1008 FunFam Receptor-like protein kinase HSL1 317 624 - -
Cone9ag0992 1008 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 783 992 - -
Cone9ag0992 1008 SUPERFAMILY RNI-like 80 448 - -
Cone9ag0992 1008 FunFam Receptor-like protein kinase HSL1 677 782 - -
Cone9ag0992 1008 Pfam Leucine rich repeat 100 160 IPR001611 GO:0005515(InterPro)
Cone9ag0992 1008 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 10 979 IPR050647 -
Cone9ag0992 1008 Pfam Leucine rich repeat N-terminal domain 28 72 IPR013210 -
Cone9ag0992 1008 SMART serkin_6 693 997 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag0992 1008 Gene3D Transferase(Phosphotransferase) domain 1 783 1002 - -
Cone9ag0992 1008 SUPERFAMILY L domain-like 390 616 - -
Cone9ag0992 1008 Gene3D Ribonuclease Inhibitor 269 338 IPR032675 -
Cone9ag0992 1008 Gene3D Ribonuclease Inhibitor 196 268 IPR032675 -
Cone9ag0992 1008 Pfam Protein kinase domain 696 917 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag0992 1008 Gene3D Phosphorylase Kinase; domain 1 675 782 - -
Cone9ag0992 1008 SMART LRR_typ_2 531 555 IPR003591 -
Cone9ag0992 1008 SMART LRR_typ_2 220 244 IPR003591 -
Cone9ag0992 1008 SMART LRR_typ_2 99 123 IPR003591 -
Cone9ag0992 1008 SMART LRR_typ_2 292 316 IPR003591 -
Cone9ag0992 1008 SMART LRR_typ_2 147 171 IPR003591 -
Cone9ag0992 1008 SMART LRR_typ_2 268 291 IPR003591 -
Cone9ag0992 1008 SMART LRR_typ_2 507 530 IPR003591 -
Cone9ag0992 1008 Gene3D Ribonuclease Inhibitor 339 626 IPR032675 -
Cone9ag0992 1008 ProSiteProfiles Protein kinase domain profile. 693 997 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag0992 1008 FunFam Leucine-rich receptor-like protein kinase family protein 213 311 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1255 Cone-Chr10:9613647 Cone9ag0992 Cone-Chr9:5100982 3.89E-173 dispersed
Cone3ag1311 Cone-Chr3:32033223 Cone9ag0992 Cone-Chr9:5100982 1.14E-170 dispersed
Cone6ag1492 Cone-Chr6:11817691 Cone9ag0992 Cone-Chr9:5100982 4.83E-84 dispersed
Cone7ag0877 Cone-Chr7:6792849 Cone9ag0992 Cone-Chr9:5100982 5.30E-93 dispersed
Cone7ag0930 Cone-Chr7:7273106 Cone9ag0992 Cone-Chr9:5100982 3.06E-69 dispersed
Cone7ag1170 Cone-Chr7:8729005 Cone9ag0992 Cone-Chr9:5100982 3.49E-86 dispersed
Cone8ag0188 Cone-Chr8:982485 Cone9ag0992 Cone-Chr9:5100982 4.19E-91 dispersed
Cone9ag0992 Cone-Chr9:5100982 Cone9ag1418 Cone-Chr9:10516382 1.27E-98 dispersed
Cone6ag0989 Cone-Chr6:5425703 Cone9ag0992 Cone-Chr9:5100982 2.01E-301 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83185 PF14226 DIOX_N 1.00E-21 CL0029 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0992 - - - 0.0