Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1008 ATGGATCAGGCAGACGCTAACTCTTGGCTTAGGAGAACAAAATTTTCCCACACAGTTTATCACCGTTGGGATGCTTCTAGGTTGTCTTCCAATACTTTTACGATCGAGCCATTTATCTTAGAGCGCAATTCAGGCTTGAAATCAAGACCAAAACCTTCTTCTTTCTCTGATAAGAAACCAGCTCTTAATAACTCTACCTCTGATCAGAACTCGGCTCTTAATAACACTCCGGTTCAGCAAAATCACACACTATGCAAACAAAGGGCTTCCTCCCCTGTTCCTATGACTATAGTTCCTGATGTGTTTAAGGAAGCTCGGTCAAATCAGAAGCGGTTCTCAACTCCAGATCCTCAGAGAAAAAGAGAAAATTTCAAAGGAATCAAGGGGAAATTATTCAATACAGAGCCACAAGAAGCAGGGGCTATCAAATCAACATCCTCATTAAATACTCCACCCAAGATTGACTTGAGCTCAATGATGAAGGGGTCTGAGCAACCGAAGAATAGGAAGGAGTCGACTTGGACTAAGTATTTTGATTATGGTGGAGGAGGGAGAGTCACTGCTTTGGAAACCACTAGTGAATGGAATGTTGATCTTTCTAAGCTGTTTCTTGGTCTTCGATTTGCTCATGGTGCTCATAGTAGGCTTTACCATGGAGTATACAACTATGAACCAGTTGCCGTTAAAATTATCCGGATTCCAGATGATGACGAAAATGGAGCTATGGAGGTTCGATTGGAGAAACAATTTTTAAGGGAAGTCACTCTTTTATCTCAGCTTCACCACCCAAATGTCATAAAGTTTGTAGCAGCATGTAGAGAACCACCAGTTTATTGTGTCATAACAGAGTATCTTTCGGGGGGTTCTTTGGGGACATATATACAAAAACATGACAAATCTCTCCCTCTTCAGAAACTGATTGCTATTGCCTTGGACATTGCTCGCGGAATGGAATATATTCACTCCCAGGGTGTTATTCATAGGGACTTGAAACCTGGGAATGTTCTTGTTGATCAAGAAAACCACCTGAAAGTTGCTGATTTTGGTATTGCTTGTGAGGAGGCATATTGTGATTTGTTGGCCAGTGATCCTGGGACCTACCGTTGGATGGCACCTGAGATGATCAAACAGAAATCTTATGGCCGGAAAGTTGACGTTTATAGCTTTGGACTTATCTTATGGGAGATGTTTGCTGGGAAAATCCCCTATGAGGATATGAATCCTATCCAAGCTGCATTTGCAGTTATAAGTAAGAATCTTAGACCCATTATTCCGAGCGACTGTCCACCCGCATTGAGAGATCTAATCAATCAATGTTGGGCCCTTCAACCCAAAAAGAGACCCGAGTTCTGGCAGATTGTGAATGTGTTAGAGCATTTCGAGTCTTCACTTGCTCGGGATGGAACATTGAGTCTCATACAGAACCCAACTTGCCAAGATCACAAGAAAGGTCTCCTCCATTGGATTCAAAAGCTTGGTTCTACAAGTTCTCATACTTCACCTTAA 1506 42.1 MDQADANSWLRRTKFSHTVYHRWDASRLSSNTFTIEPFILERNSGLKSRPKPSSFSDKKPALNNSTSDQNSALNNTPVQQNHTLCKQRASSPVPMTIVPDVFKEARSNQKRFSTPDPQRKRENFKGIKGKLFNTEPQEAGAIKSTSSLNTPPKIDLSSMMKGSEQPKNRKESTWTKYFDYGGGGRVTALETTSEWNVDLSKLFLGLRFAHGAHSRLYHGVYNYEPVAVKIIRIPDDDENGAMEVRLEKQFLREVTLLSQLHHPNVIKFVAACREPPVYCVITEYLSGGSLGTYIQKHDKSLPLQKLIAIALDIARGMEYIHSQGVIHRDLKPGNVLVDQENHLKVADFGIACEEAYCDLLASDPGTYRWMAPEMIKQKSYGRKVDVYSFGLILWEMFAGKIPYEDMNPIQAAFAVISKNLRPIIPSDCPPALRDLINQCWALQPKKRPEFWQIVNVLEHFESSLARDGTLSLIQNPTCQDHKKGLLHWIQKLGSTSSHTSP 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5263645 5266616 + Conep09aG0103900.1 Cone9ag1008 445171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1008 501 CDD STKc_MAP3K-like 209 457 - -
Cone9ag1008 501 ProSitePatterns Serine/Threonine protein kinases active-site signature. 325 337 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone9ag1008 501 MobiDBLite consensus disorder prediction 44 76 - -
Cone9ag1008 501 PANTHER SERINE-THREONINE PROTEIN KINASE 58 458 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cone9ag1008 501 MobiDBLite consensus disorder prediction 140 170 - -
Cone9ag1008 501 Gene3D Phosphorylase Kinase; domain 1 190 286 - -
Cone9ag1008 501 MobiDBLite consensus disorder prediction 47 76 - -
Cone9ag1008 501 SUPERFAMILY Protein kinase-like (PK-like) 188 457 IPR011009 -
Cone9ag1008 501 MobiDBLite consensus disorder prediction 140 156 - -
Cone9ag1008 501 FunFam Serine/threonine-protein kinase isoform 1 192 286 - -
Cone9ag1008 501 ProSiteProfiles Protein kinase domain profile. 202 460 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag1008 501 SMART serkin_6 202 462 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag1008 501 Gene3D Transferase(Phosphotransferase) domain 1 287 488 - -
Cone9ag1008 501 Pfam Protein tyrosine and serine/threonine kinase 209 457 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone9ag1008 501 PRINTS Tyrosine kinase catalytic domain signature 319 337 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone9ag1008 501 PRINTS Tyrosine kinase catalytic domain signature 428 450 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone9ag1008 501 PRINTS Tyrosine kinase catalytic domain signature 282 295 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone9ag1008 501 PRINTS Tyrosine kinase catalytic domain signature 365 375 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone9ag1008 501 PRINTS Tyrosine kinase catalytic domain signature 384 406 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag1915 Cone-Chr7:12257561 Cone9ag1008 Cone-Chr9:5263645 4.59E-72 dispersed
Cone8ag0256 Cone-Chr8:1469350 Cone9ag1008 Cone-Chr9:5263645 1.53E-22 dispersed
Cone8ag0877 Cone-Chr8:8624044 Cone9ag1008 Cone-Chr9:5263645 3.24E-69 dispersed
Cone8ag1306 Cone-Chr8:10645628 Cone9ag1008 Cone-Chr9:5263645 4.82E-59 dispersed
Cone1ag0167 Cone-Chr1:930630 Cone9ag1008 Cone-Chr9:5263645 6.37E-229 wgd
Cone12ag1487 Cone-Chr12:10611532 Cone9ag1008 Cone-Chr9:5263645 2.01E-43 wgd
Cone5ag1705 Cone-Chr5:12117338 Cone9ag1008 Cone-Chr9:5263645 8.06E-225 wgd
Cone6ag1010 Cone-Chr6:5633418 Cone9ag1008 Cone-Chr9:5263645 0 wgd
Cone8ag1535 Cone-Chr8:11531445 Cone9ag1008 Cone-Chr9:5263645 4.38E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83186 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1008 - - - 0.0