Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1025 ATGAGTTGTAGCTGCTTTGGTTCCTCCTCTGTCATAGAGAAGAAGCGGAAATCTTCTCATTCTCGTGATTACATTGATGATGATTTACTTGAAAATATTACACATTTCTCCTACGATGAGCTAAAATTGGCAACCAATAATTTTAATTCTGGCAATAAGTTAGGACGTGGAGGTTTTGGAAGCGTTTACAAGGGAGTTTTAAGTAGTGGAAGAGAAGTTGCGGTGAAAAATCTTTCGGCCGAGTCGAAGCAAGGAGTGAGGGAATTTCTTACAGAGATTAAAACCATATCTAATGTTCATCATCCGAATCTTGTTGAGTTGGTTGGGTGTTGTGTTCAAGGAGCTCACCGGGTTTTGATCTATGAATTTGTCGAAAATAATAGTCTTGACCGAGCGTTATTAGGATCAAGGAGTACTAGCCTCGGATTGGATTGGGAAAAAAGGTCTACTATTTGCATTGGTGTTGCCAAGGGTCTTAAATTCCTTCATGAAGAACTTGTTCCTCATATTATACATAGAGACATCAAAGCAAGTAATATACTCCTTGAGAAAGACTTCAATCCTAAAATCGGCGACTTCGGATTGGCTAAACTTTTCCCAGACAACATCACTCATATCAGCACAAGAATCGCCGGAACAACCGGTTATTTGGCTCCGGAATATGCATTCGGTGGTCAACTAACCATGAAAGCGGATGTCTATAGTTTTGGAGTTCTAGTACTTGAAATAATTAGCGGAAGATGGAGTGGACGAGCATACTGTGGAGATACGGAAAAATTCCTTCTCGAATGGACATGGGAGCTATATGAAAAGGGAACACTATTGGATGTAGTCGATTCACAGCTGCATGAGTTTCCCAAACAAGAAGTAATTAGGTACATAAAGGTAGCCCTGTTTTGCACCCAAGCAACTGGAGGTCAGAGGCCATTGATGAGCCAGGTTTTCGAGATGCTCACAAAGAACATCAGGCTCAATGAAAAGCTCCTATCTGCTCCCGGAGTTTTCCAGGATTCGGATTCTTTAGGTCAAAAAAGGGTTTCTGATTCGAGCAGCAATCAGATGAGCGCAGCCCCAGTTACTATTACACAAGTGACCCCTAGATGA 1104 41.58 MSCSCFGSSSVIEKKRKSSHSRDYIDDDLLENITHFSYDELKLATNNFNSGNKLGRGGFGSVYKGVLSSGREVAVKNLSAESKQGVREFLTEIKTISNVHHPNLVELVGCCVQGAHRVLIYEFVENNSLDRALLGSRSTSLGLDWEKRSTICIGVAKGLKFLHEELVPHIIHRDIKASNILLEKDFNPKIGDFGLAKLFPDNITHISTRIAGTTGYLAPEYAFGGQLTMKADVYSFGVLVLEIISGRWSGRAYCGDTEKFLLEWTWELYEKGTLLDVVDSQLHEFPKQEVIRYIKVALFCTQATGGQRPLMSQVFEMLTKNIRLNEKLLSAPGVFQDSDSLGQKRVSDSSSNQMSAAPVTITQVTPR 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5436810 5439168 + Conep09aG0105600.1 Cone9ag1025 445188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1025 367 FunFam cold-responsive protein kinase 1 18 123 - -
Cone9ag1025 367 FunFam Putative LRR receptor-like serine/threonine-protein kinase 124 330 - -
Cone9ag1025 367 SMART serkin_6 48 341 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag1025 367 MobiDBLite consensus disorder prediction 340 367 - -
Cone9ag1025 367 SUPERFAMILY Protein kinase-like (PK-like) 28 318 IPR011009 -
Cone9ag1025 367 ProSiteProfiles Protein kinase domain profile. 48 324 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag1025 367 Gene3D Phosphorylase Kinase; domain 1 7 123 - -
Cone9ag1025 367 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 19 354 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Cone9ag1025 367 Pfam Protein tyrosine and serine/threonine kinase 51 316 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone9ag1025 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone9ag1025 367 ProSitePatterns Protein kinases ATP-binding region signature. 54 76 IPR017441 GO:0005524(InterPro)
Cone9ag1025 367 Gene3D Transferase(Phosphotransferase) domain 1 124 329 - -
Cone9ag1025 367 CDD STKc_IRAK 54 320 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone9ag0212 Cone-Chr9:902408 Cone9ag1025 Cone-Chr9:5436810 8.29E-125 dispersed
Cone9ag0235 Cone-Chr9:991865 Cone9ag1025 Cone-Chr9:5436810 3.68E-95 dispersed
Cone9ag1025 Cone-Chr9:5436810 Cone9ag1060 Cone-Chr9:5810152 1.04E-82 dispersed
Cone1ag0165 Cone-Chr1:923247 Cone9ag1025 Cone-Chr9:5436810 1.38E-61 wgd
Cone6ag1029 Cone-Chr6:5801684 Cone9ag1025 Cone-Chr9:5436810 2.45E-245 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83187 PF03763 Remorin_C 7.90E-28 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1025 - - - 0.0