Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone9ag1025 | ATGAGTTGTAGCTGCTTTGGTTCCTCCTCTGTCATAGAGAAGAAGCGGAAATCTTCTCATTCTCGTGATTACATTGATGATGATTTACTTGAAAATATTACACATTTCTCCTACGATGAGCTAAAATTGGCAACCAATAATTTTAATTCTGGCAATAAGTTAGGACGTGGAGGTTTTGGAAGCGTTTACAAGGGAGTTTTAAGTAGTGGAAGAGAAGTTGCGGTGAAAAATCTTTCGGCCGAGTCGAAGCAAGGAGTGAGGGAATTTCTTACAGAGATTAAAACCATATCTAATGTTCATCATCCGAATCTTGTTGAGTTGGTTGGGTGTTGTGTTCAAGGAGCTCACCGGGTTTTGATCTATGAATTTGTCGAAAATAATAGTCTTGACCGAGCGTTATTAGGATCAAGGAGTACTAGCCTCGGATTGGATTGGGAAAAAAGGTCTACTATTTGCATTGGTGTTGCCAAGGGTCTTAAATTCCTTCATGAAGAACTTGTTCCTCATATTATACATAGAGACATCAAAGCAAGTAATATACTCCTTGAGAAAGACTTCAATCCTAAAATCGGCGACTTCGGATTGGCTAAACTTTTCCCAGACAACATCACTCATATCAGCACAAGAATCGCCGGAACAACCGGTTATTTGGCTCCGGAATATGCATTCGGTGGTCAACTAACCATGAAAGCGGATGTCTATAGTTTTGGAGTTCTAGTACTTGAAATAATTAGCGGAAGATGGAGTGGACGAGCATACTGTGGAGATACGGAAAAATTCCTTCTCGAATGGACATGGGAGCTATATGAAAAGGGAACACTATTGGATGTAGTCGATTCACAGCTGCATGAGTTTCCCAAACAAGAAGTAATTAGGTACATAAAGGTAGCCCTGTTTTGCACCCAAGCAACTGGAGGTCAGAGGCCATTGATGAGCCAGGTTTTCGAGATGCTCACAAAGAACATCAGGCTCAATGAAAAGCTCCTATCTGCTCCCGGAGTTTTCCAGGATTCGGATTCTTTAGGTCAAAAAAGGGTTTCTGATTCGAGCAGCAATCAGATGAGCGCAGCCCCAGTTACTATTACACAAGTGACCCCTAGATGA | 1104 | 41.58 | MSCSCFGSSSVIEKKRKSSHSRDYIDDDLLENITHFSYDELKLATNNFNSGNKLGRGGFGSVYKGVLSSGREVAVKNLSAESKQGVREFLTEIKTISNVHHPNLVELVGCCVQGAHRVLIYEFVENNSLDRALLGSRSTSLGLDWEKRSTICIGVAKGLKFLHEELVPHIIHRDIKASNILLEKDFNPKIGDFGLAKLFPDNITHISTRIAGTTGYLAPEYAFGGQLTMKADVYSFGVLVLEIISGRWSGRAYCGDTEKFLLEWTWELYEKGTLLDVVDSQLHEFPKQEVIRYIKVALFCTQATGGQRPLMSQVFEMLTKNIRLNEKLLSAPGVFQDSDSLGQKRVSDSSSNQMSAAPVTITQVTPR | 367 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 5436810 | 5439168 | + | Conep09aG0105600.1 | Cone9ag1025 | 445188 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone9ag1025 | 367 | FunFam | cold-responsive protein kinase 1 | 18 | 123 | - | - | |
Cone9ag1025 | 367 | FunFam | Putative LRR receptor-like serine/threonine-protein kinase | 124 | 330 | - | - | |
Cone9ag1025 | 367 | SMART | serkin_6 | 48 | 341 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cone9ag1025 | 367 | MobiDBLite | consensus disorder prediction | 340 | 367 | - | - | |
Cone9ag1025 | 367 | SUPERFAMILY | Protein kinase-like (PK-like) | 28 | 318 | IPR011009 | - | |
Cone9ag1025 | 367 | ProSiteProfiles | Protein kinase domain profile. | 48 | 324 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cone9ag1025 | 367 | Gene3D | Phosphorylase Kinase; domain 1 | 7 | 123 | - | - | |
Cone9ag1025 | 367 | PANTHER | CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 | 19 | 354 | IPR052059 | GO:0004674(PANTHER)|GO:0006468(PANTHER) | |
Cone9ag1025 | 367 | Pfam | Protein tyrosine and serine/threonine kinase | 51 | 316 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cone9ag1025 | 367 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 170 | 182 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cone9ag1025 | 367 | ProSitePatterns | Protein kinases ATP-binding region signature. | 54 | 76 | IPR017441 | GO:0005524(InterPro) | |
Cone9ag1025 | 367 | Gene3D | Transferase(Phosphotransferase) domain 1 | 124 | 329 | - | - | |
Cone9ag1025 | 367 | CDD | STKc_IRAK | 54 | 320 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone9ag0212 | Cone-Chr9:902408 | Cone9ag1025 | Cone-Chr9:5436810 | 8.29E-125 | dispersed | |
Cone9ag0235 | Cone-Chr9:991865 | Cone9ag1025 | Cone-Chr9:5436810 | 3.68E-95 | dispersed | |
Cone9ag1025 | Cone-Chr9:5436810 | Cone9ag1060 | Cone-Chr9:5810152 | 1.04E-82 | dispersed | |
Cone1ag0165 | Cone-Chr1:923247 | Cone9ag1025 | Cone-Chr9:5436810 | 1.38E-61 | wgd | |
Cone6ag1029 | Cone-Chr6:5801684 | Cone9ag1025 | Cone-Chr9:5436810 | 2.45E-245 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
83187 | PF03763 | Remorin_C | 7.90E-28 | No_clan | Cone | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone9ag1025 | - | - | - | 0.0 |