Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1035 ATGATAAATGATTTCCCAACCATATTCGAAGTTGTGACTGGAACTGGTAAACCACCAAAAGAGCTGTCTGCTACTCATAACAACAGCAGCAAAAGCAAACTGAGTGGAAAGATGTCACGACAATCAGAGGCCCACACTAAGGAAGTGAAGATGTCCCCACCAAACAAAGAAGAGGATGATAGTGGAGAAGAAGAGGAAGATGATGAACAAGGTGCAATATGTGTGGCCTGTGGTGATAACTATGGAACGAACGAGTTCTGGATTTGTTGTGATATTTATGAAAGATGGTTCCATGGTAAGTGTGTAAAGATCATGCCTGCGAAAGCCGAGCATATCAAGCGGTACAAGTGTCCAAGTTGTAGTAACAAGAGGGCTAAGCATAAAAGGGTTCTAACTTTTGTGATGGTAACTTGA 414 42.03 MINDFPTIFEVVTGTGKPPKELSATHNNSSKSKLSGKMSRQSEAHTKEVKMSPPNKEEDDSGEEEEDDEQGAICVACGDNYGTNEFWICCDIYERWFHGKCVKIMPAKAEHIKRYKCPSCSNKRAKHKRVLTFVMVT 137
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5544361 5544891 + Conep09aG0106600.1 Cone9ag1035 445198

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1035 137 PANTHER CPG BINDING PROTEIN 1 126 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Cone9ag1035 137 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 122 IPR013083 -
Cone9ag1035 137 Pfam PHD-finger 74 120 IPR019787 -
Cone9ag1035 137 MobiDBLite consensus disorder prediction 20 37 - -
Cone9ag1035 137 FunFam PHD finger alfin-like protein 66 122 - -
Cone9ag1035 137 CDD PHD_AL_plant 74 123 IPR044104 -
Cone9ag1035 137 SUPERFAMILY FYVE/PHD zinc finger 63 129 IPR011011 -
Cone9ag1035 137 SMART PHD_3 73 121 IPR001965 -
Cone9ag1035 137 MobiDBLite consensus disorder prediction 13 69 - -
Cone9ag1035 137 MobiDBLite consensus disorder prediction 38 57 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1035 K26274 - - csv:101212601 209.149
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1687 Cone-Chr4:12572850 Cone9ag1035 Cone-Chr9:5544361 1.73E-34 dispersed
Cone7ag1605 Cone-Chr7:10940102 Cone9ag1035 Cone-Chr9:5544361 6.44E-37 dispersed
Cone9ag1035 Cone-Chr9:5544361 Cone19ag0696 Cone-Chr19:5833670 3.98E-70 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone3ag0883 . 1 250 Alfin-like Transcription Factor Family AT1G14510 85.2 6.9e-114 407.5
Cone13ag0701 . 1 253 Alfin-like Transcription Factor Family AT1G14510 82.2 4.5e-113 404.8
Cone10ag0852 . 1 250 Alfin-like Transcription Factor Family AT1G14510 84.4 5.0e-112 401.4
Cone19ag0696 . 1 252 Alfin-like Transcription Factor Family AT1G14510 80.6 1.4e-109 393.3
Cone7ag1605 . 1 251 Alfin-like Transcription Factor Family AT1G14510 72.9 1.5e-95 346.7
Cone7ag0758 . 9 247 Alfin-like Transcription Factor Family AT1G14510 68.4 8.8e-93 337.4
Cone4ag1687 . 1 254 Alfin-like Transcription Factor Family AT1G14510 72.8 4.4e-92 335.1
Cone4ag0807 . 9 247 Alfin-like Transcription Factor Family AT1G14510 65.7 4.1e-90 328.6
Cone3ag0428 . 7 236 Alfin-like Transcription Factor Family AT1G14510 60.0 3.6e-78 288.9
Cone10ag0390 . 7 216 Alfin-like Transcription Factor Family AT1G14510 53.8 2.3e-64 243.0
Cone9ag1035 . 1 124 Alfin-like Transcription Factor Family AT1G14510 71.8 1.5e-36 150.6
Cone7ag1605 . 1 253 Alfin-like Transcription Factor Family AT5G26210 79.9 7.3e-111 397.5
Cone7ag0758 . 1 249 Alfin-like Transcription Factor Family AT5G26210 72.8 7.5e-108 387.5
Cone4ag1687 . 1 255 Alfin-like Transcription Factor Family AT5G26210 79.6 1.3e-107 386.7
Cone4ag0807 . 1 249 Alfin-like Transcription Factor Family AT5G26210 71.7 9.2e-106 380.6
Cone19ag0696 . 1 252 Alfin-like Transcription Factor Family AT5G26210 70.2 2.0e-92 336.3
Cone13ag0701 . 1 253 Alfin-like Transcription Factor Family AT5G26210 71.1 6.4e-91 331.3
Cone3ag0883 . 9 252 Alfin-like Transcription Factor Family AT5G26210 71.1 1.9e-90 329.7
Cone10ag0852 . 9 252 Alfin-like Transcription Factor Family AT5G26210 70.7 1.3e-88 323.6
Cone3ag0428 . 4 238 Alfin-like Transcription Factor Family AT5G26210 59.4 1.2e-81 300.4
Cone10ag0390 . 4 218 Alfin-like Transcription Factor Family AT5G26210 53.0 1.1e-66 250.8
Cone7ag1605 . 3 253 Alfin-like Transcription Factor Family AT3G42790 75.8 6.7e-101 364.4
Cone7ag0758 . 1 249 Alfin-like Transcription Factor Family AT3G42790 68.9 2.8e-99 359.0
Cone4ag0807 . 1 249 Alfin-like Transcription Factor Family AT3G42790 68.1 5.9e-97 351.3
Cone4ag1687 . 1 255 Alfin-like Transcription Factor Family AT3G42790 73.5 8.5e-96 347.4
Cone13ag0701 . 9 253 Alfin-like Transcription Factor Family AT3G42790 71.0 5.3e-90 328.2
Cone19ag0696 . 9 252 Alfin-like Transcription Factor Family AT3G42790 70.4 9.1e-90 327.4
Cone3ag0883 . 9 252 Alfin-like Transcription Factor Family AT3G42790 71.8 1.2e-89 327.0
Cone10ag0852 . 9 252 Alfin-like Transcription Factor Family AT3G42790 72.2 3.4e-89 325.5
Cone3ag0428 . 6 238 Alfin-like Transcription Factor Family AT3G42790 59.8 4.5e-81 298.5
Cone10ag0390 . 6 218 Alfin-like Transcription Factor Family AT3G42790 53.5 5.7e-68 255.0
Cone3ag0428 . 6 239 Alfin-like Transcription Factor Family AT5G05610 78.7 5.8e-110 394.4
Cone10ag0390 . 4 219 Alfin-like Transcription Factor Family AT5G05610 71.7 8.2e-96 347.4
Cone7ag0758 . 8 249 Alfin-like Transcription Factor Family AT5G05610 64.2 8.7e-90 327.4
Cone4ag0807 . 8 249 Alfin-like Transcription Factor Family AT5G05610 65.0 3.3e-89 325.5
Cone7ag1605 . 8 253 Alfin-like Transcription Factor Family AT5G05610 64.0 1.3e-88 323.6
Cone4ag1687 . 8 256 Alfin-like Transcription Factor Family AT5G05610 61.6 7.7e-86 314.3
Cone13ag0701 . 9 249 Alfin-like Transcription Factor Family AT5G05610 63.9 3.6e-83 305.4
Cone3ag0883 . 9 252 Alfin-like Transcription Factor Family AT5G05610 62.3 6.1e-83 304.7
Cone19ag0696 . 9 251 Alfin-like Transcription Factor Family AT5G05610 63.8 6.1e-83 304.7
Cone10ag0852 . 9 252 Alfin-like Transcription Factor Family AT5G05610 61.5 8.8e-82 300.8
Cone3ag0428 . 43 239 Alfin-like Transcription Factor Family AT3G11200 80.6 2.0e-91 332.8
Cone10ag0390 . 33 219 Alfin-like Transcription Factor Family AT3G11200 75.9 2.3e-79 292.7
Cone4ag0807 . 44 249 Alfin-like Transcription Factor Family AT3G11200 64.3 2.2e-74 276.2
Cone7ag0758 . 44 249 Alfin-like Transcription Factor Family AT3G11200 63.8 2.2e-74 276.2
Cone7ag1605 . 44 253 Alfin-like Transcription Factor Family AT3G11200 66.0 6.5e-74 274.6
Cone4ag1687 . 44 256 Alfin-like Transcription Factor Family AT3G11200 62.8 1.1e-70 263.8
Cone3ag0883 . 44 252 Alfin-like Transcription Factor Family AT3G11200 62.7 3.1e-68 255.8
Cone13ag0701 . 44 249 Alfin-like Transcription Factor Family AT3G11200 63.8 2.0e-67 253.1
Cone19ag0696 . 44 251 Alfin-like Transcription Factor Family AT3G11200 62.7 3.5e-67 252.3
Cone10ag0852 . 44 252 Alfin-like Transcription Factor Family AT3G11200 61.2 1.3e-66 250.4
Cone3ag0883 . 1 161 Alfin-like Transcription Factor Family AT2G02470 85.1 3.8e-75 278.9
Cone13ag0701 . 1 161 Alfin-like Transcription Factor Family AT2G02470 84.5 1.1e-74 277.3
Cone10ag0852 . 1 161 Alfin-like Transcription Factor Family AT2G02470 84.5 1.9e-74 276.6
Cone19ag0696 . 1 161 Alfin-like Transcription Factor Family AT2G02470 83.2 2.4e-74 276.2
Cone7ag1605 . 1 158 Alfin-like Transcription Factor Family AT2G02470 75.3 3.9e-64 242.3
Cone7ag0758 . 1 158 Alfin-like Transcription Factor Family AT2G02470 73.4 7.4e-63 238.0
Cone4ag1687 . 9 158 Alfin-like Transcription Factor Family AT2G02470 77.3 2.8e-62 236.1
Cone4ag0807 . 1 158 Alfin-like Transcription Factor Family AT2G02470 72.2 8.2e-62 234.6
Cone3ag0428 . 7 154 Alfin-like Transcription Factor Family AT2G02470 68.2 1.8e-53 206.8
Cone10ag0390 . 7 134 Alfin-like Transcription Factor Family AT2G02470 58.3 5.1e-40 162.2
Cone7ag1605 . 3 167 Alfin-like Transcription Factor Family AT5G20510 78.2 6.9e-74 274.2
Cone4ag0807 . 1 164 Alfin-like Transcription Factor Family AT5G20510 77.6 6.5e-72 267.7
Cone7ag0758 . 1 164 Alfin-like Transcription Factor Family AT5G20510 77.0 8.5e-72 267.3
Cone4ag1687 . 1 167 Alfin-like Transcription Factor Family AT5G20510 76.2 1.9e-71 266.2
Cone3ag0883 . 3 163 Alfin-like Transcription Factor Family AT5G20510 73.0 2.2e-64 242.7
Cone10ag0852 . 3 163 Alfin-like Transcription Factor Family AT5G20510 72.4 1.1e-63 240.4
Cone13ag0701 . 6 163 Alfin-like Transcription Factor Family AT5G20510 72.5 9.4e-63 237.3
Cone19ag0696 . 6 163 Alfin-like Transcription Factor Family AT5G20510 70.6 1.0e-61 233.8
Cone3ag0428 . 6 144 Alfin-like Transcription Factor Family AT5G20510 68.5 5.2e-53 204.9
Cone10ag0390 . 6 124 Alfin-like Transcription Factor Family AT5G20510 58.7 5.0e-40 161.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0054225 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46860 PF00702 Hydrolase 2.60E-45 CL0137 Cone TF