Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1035 ATGATAAATGATTTCCCAACCATATTCGAAGTTGTGACTGGAACTGGTAAACCACCAAAAGAGCTGTCTGCTACTCATAACAACAGCAGCAAAAGCAAACTGAGTGGAAAGATGTCACGACAATCAGAGGCCCACACTAAGGAAGTGAAGATGTCCCCACCAAACAAAGAAGAGGATGATAGTGGAGAAGAAGAGGAAGATGATGAACAAGGTGCAATATGTGTGGCCTGTGGTGATAACTATGGAACGAACGAGTTCTGGATTTGTTGTGATATTTATGAAAGATGGTTCCATGGTAAGTGTGTAAAGATCATGCCTGCGAAAGCCGAGCATATCAAGCGGTACAAGTGTCCAAGTTGTAGTAACAAGAGGGCTAAGCATAAAAGGGTTCTAACTTTTGTGATGGTAACTTGA 414 42.03 MINDFPTIFEVVTGTGKPPKELSATHNNSSKSKLSGKMSRQSEAHTKEVKMSPPNKEEDDSGEEEEDDEQGAICVACGDNYGTNEFWICCDIYERWFHGKCVKIMPAKAEHIKRYKCPSCSNKRAKHKRVLTFVMVT 137
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5544361 5544891 + Conep09aG0106600.1 Cone9ag1035 445198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1035 137 PANTHER CPG BINDING PROTEIN 1 126 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Cone9ag1035 137 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 122 IPR013083 -
Cone9ag1035 137 Pfam PHD-finger 74 120 IPR019787 -
Cone9ag1035 137 MobiDBLite consensus disorder prediction 20 37 - -
Cone9ag1035 137 FunFam PHD finger alfin-like protein 66 122 - -
Cone9ag1035 137 CDD PHD_AL_plant 74 123 IPR044104 -
Cone9ag1035 137 SUPERFAMILY FYVE/PHD zinc finger 63 129 IPR011011 -
Cone9ag1035 137 SMART PHD_3 73 121 IPR001965 -
Cone9ag1035 137 MobiDBLite consensus disorder prediction 13 69 - -
Cone9ag1035 137 MobiDBLite consensus disorder prediction 38 57 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1687 Cone-Chr4:12572850 Cone9ag1035 Cone-Chr9:5544361 1.73E-34 dispersed
Cone7ag1605 Cone-Chr7:10940102 Cone9ag1035 Cone-Chr9:5544361 6.44E-37 dispersed
Cone9ag1035 Cone-Chr9:5544361 Cone19ag0696 Cone-Chr19:5833670 3.98E-70 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46860 PF00702 Hydrolase 2.60E-45 CL0137 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1035 K26274 - csv:101212601 209.149