Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1037 ATGAATTTTATAACAAATACAAGATCTTTAACTATCCTTCTTTTCCTAGCTTGCTTGTATCTAATTCCTATCAAATCCATAGACACTATAACATCATCTACACCAATCAAAGACCCTCAAGCCATACTCTCTAATGGAGGCATCTTCAAACTAGGATTTTTCACCCCGGGAAAAGATTCTACAAATCGCTATTTCGGAATTTGGCTCAGTCAAATTTCAGCTCAAACTGTCGTATGGGTAGCTAATAGAGACAAGCCCCTCAACGATTCTTCTGGTCTTTTTACATTATCTCAAGATGGAAATCTTGTCTTGACAAATGGACAGAACGAAACTCTTTGGTCTTCAAATCTTTTAGACACTGTTCACAATTCAAGTGCACGGCTTTTAGATAACGGGAATCTCGTCTTACAGGATTTGTCAACGGGGATAACCACATGGGAGAGTTTCGAACACCCATGCGACAAACTTTTGCCACAGATGGAATTTACTACAATTCGAAACACTAAAGAGACAATGCAACTTGTTTCATGGAAAACGTCATCAGATCCATTTATGGGAAGCTTTTCTCTTGCCTTAGACGGCCGCCTTCCTTCTGAAATTATTATTTCGAAAAATGGTGAACTGCATTATAGAACCGGTCCATGGAACGGTAAATTCTTTATAGGTATTCCCGGTATGGATTCAGGTTATCTTTATGGATTTAATCTTGTATTTAAAGATGAAAGTATTACACTTTCTGCTGCAAATATAAGTGATCCTCTTATGATGACTTTGTTCTTGAGTTCACAGGGGAATCTAGAGCGAAAACATTGGGACCACGAAGGGAAGGATTGGATGGATGATTGGACTTCTTTGAAAAATGAGTGTGATCTATATGGAACTTGTGGTAAATTTGGGATTTGTGATTCAAATAAATCCCCCACTTGCAGGTGTTTAAAAGGGTATGAGCCAAAGAATGTAGAGGAGTGGAATAGACAAAATTGGACAAGTGGGTGTAAGAGAAGGACATATTTGAAGTGTGAGAGGGTGAGTAGCAATATGAGTGGAAAAGGAGGGAAAGAAGATGGGTTTCTTAAGCTTGAAATGGTCAAAGTGCCCTACTTCGCTATTTATTCGATCAGTCCTGTTTCGGAAGAAGAATGTCGATATCAGTGCTTGCTAAATTGTACTTGTAATTCATATTCATATCAATATGGGTTTGGTTGTATGTTATGGAATGATGACTTGATTGACATGCAGCAATTTCGAAATGGAGGAACCGAACTCTACCTTCGTTTAGCCGCTTCTGAACTAGATACAACTAAGAACATCACAACTATTGTCTCTGTTTCGGTAATATCCGGTTTTCTTACCTTAGTCATATGCATATACTTCTTATGGAAGTGGAGGGTTAAACAAAGAGGTGAAAAGGAAAGCGCAGACGTATTGTCACACAGCATTCAAGAACCATGTCTAATACTTCCAGGTGATAATATGCGTGGGGATACTCTTTTCCAATTTGAAAAACTAGCAACCGCAACTAACAATTTTAGTTTGGATAACAAGCTCGGACAAGGTGGCTTTGGTCCCGTTTACAAAGGAAAATTTTCCGAAGAACAGGAAATAGCAGTAAAAAGACTTTCTAAGACCTCGGAACAAGGGGTGGAGGAATTTACTAATGAAGTGATTGTCATGTCCAAGCTTCACCATAGAAATGTGGTGAGACTTCTTGGTTGTTGTGTTGAGATAGAAGAAAGAATGTTGATATATGAATACATGCCAAATAGAAGCTTGGATTCATTTATCTTCGATTCATCAAGAAAACTGCTTTTAGATTGGAGAAAACGGTTCAACATTATTGAGGGCATTGCCCGAGGTCTTCTTTATCTACACAGGGATTCAAGGTTACTGATTATTCATAGAGATCTCAAGGCAAGTAACATTCTTTTAGATAAAGACTTGAATCCGAAAATTTCAGATTTTGGTATGGCTAGGATCTTTGGTGGCAATCAAGATCAAGCCAATACTAAAAGGGTCGTGGGTACATATGGCTATATGGCCCCTGAATACGCTATGGTTGGCATATTTTCGGAGAAATCGGATGTCTTTAGCTATGGAGTTTTGTTGCTTGAAATTGTTAGTGGAAGAAGAAGCACAAGTTTCTACGATGACCAACAGGTTTTAAGCCTTTTCGGATACGCATGGAAATTGTGGAATGAAGACAACATTACTACTTTGATAGACAGAGCAATATTTGATTCCAGCTACGAAAGGGAGATTGTAAGATGCATCCACTTAGGGTTATTATGCGTACAAGAATCAACAAAAGATAGGCCCAATGTGTCAACTATCATTTCCATTCTAGGAAGTGAAACTGTGGAGCTTCCACCTCCAAACAAGCCAGCATTCACGGATAGGCAGATTTCTCAAGATACAGAATCCTCAGAAAATTTTAATGGAAGATGTTTTACTAACAATGTTACAATAACTCTTATCCAAGGAAGATGA 2487 38.32 MNFITNTRSLTILLFLACLYLIPIKSIDTITSSTPIKDPQAILSNGGIFKLGFFTPGKDSTNRYFGIWLSQISAQTVVWVANRDKPLNDSSGLFTLSQDGNLVLTNGQNETLWSSNLLDTVHNSSARLLDNGNLVLQDLSTGITTWESFEHPCDKLLPQMEFTTIRNTKETMQLVSWKTSSDPFMGSFSLALDGRLPSEIIISKNGELHYRTGPWNGKFFIGIPGMDSGYLYGFNLVFKDESITLSAANISDPLMMTLFLSSQGNLERKHWDHEGKDWMDDWTSLKNECDLYGTCGKFGICDSNKSPTCRCLKGYEPKNVEEWNRQNWTSGCKRRTYLKCERVSSNMSGKGGKEDGFLKLEMVKVPYFAIYSISPVSEEECRYQCLLNCTCNSYSYQYGFGCMLWNDDLIDMQQFRNGGTELYLRLAASELDTTKNITTIVSVSVISGFLTLVICIYFLWKWRVKQRGEKESADVLSHSIQEPCLILPGDNMRGDTLFQFEKLATATNNFSLDNKLGQGGFGPVYKGKFSEEQEIAVKRLSKTSEQGVEEFTNEVIVMSKLHHRNVVRLLGCCVEIEERMLIYEYMPNRSLDSFIFDSSRKLLLDWRKRFNIIEGIARGLLYLHRDSRLLIIHRDLKASNILLDKDLNPKISDFGMARIFGGNQDQANTKRVVGTYGYMAPEYAMVGIFSEKSDVFSYGVLLLEIVSGRRSTSFYDDQQVLSLFGYAWKLWNEDNITTLIDRAIFDSSYEREIVRCIHLGLLCVQESTKDRPNVSTIISILGSETVELPPPNKPAFTDRQISQDTESSENFNGRCFTNNVTITLIQGR 828
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5554390 5557820 - Conep09aG0106800.1 Cone9ag1037 445200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1037 828 CDD STKc_IRAK 516 781 - -
Cone9ag1037 828 Gene3D - 24 149 IPR036426 -
Cone9ag1037 828 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 489 585 - -
Cone9ag1037 828 ProSiteProfiles EGF-like domain profile. 285 321 IPR000742 -
Cone9ag1037 828 SUPERFAMILY alpha-D-mannose-specific plant lectins 62 216 IPR036426 -
Cone9ag1037 828 CDD EGF_CA 287 319 - -
Cone9ag1037 828 PIRSF SRK 2 828 IPR024171 GO:0004674(InterPro)
Cone9ag1037 828 Gene3D Transferase(Phosphotransferase) domain 1 586 788 - -
Cone9ag1037 828 Gene3D Phosphorylase Kinase; domain 1 490 585 - -
Cone9ag1037 828 ProSiteProfiles Protein kinase domain profile. 510 761 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag1037 828 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 586 789 - -
Cone9ag1037 828 ProSiteProfiles Bulb-type lectin domain profile. 27 149 IPR001480 -
Cone9ag1037 828 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 24 149 - -
Cone9ag1037 828 Pfam S-locus glycoprotein domain 210 319 IPR000858 GO:0048544(InterPro)
Cone9ag1037 828 Pfam Domain of unknown function (DUF3403) 783 828 IPR021820 GO:0004674(InterPro)
Cone9ag1037 828 Pfam Protein tyrosine and serine/threonine kinase 511 778 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone9ag1037 828 CDD B_lectin 35 152 IPR001480 -
Cone9ag1037 828 ProSitePatterns Serine/Threonine protein kinases active-site signature. 631 643 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone9ag1037 828 Pfam D-mannose binding lectin 76 178 IPR001480 -
Cone9ag1037 828 Pfam PAN-like domain 353 412 IPR003609 -
Cone9ag1037 828 CDD PAN_AP_plant 349 427 - -
Cone9ag1037 828 SUPERFAMILY Protein kinase-like (PK-like) 495 781 IPR011009 -
Cone9ag1037 828 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 17 793 - -
Cone9ag1037 828 SMART serkin_6 510 786 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag1037 828 SMART blect_4 33 152 IPR001480 -
Cone9ag1037 828 ProSiteProfiles PAN/Apple domain profile. 340 427 IPR003609 -
Cone9ag1037 828 SMART ntp_6 352 426 IPR003609 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0612 Cone-Chr4:2817433 Cone9ag1037 Cone-Chr9:5554390 6.46E-107 dispersed
Cone6ag1043 Cone-Chr6:5995292 Cone9ag1037 Cone-Chr9:5554390 1.45E-57 dispersed
Cone8ag1515 Cone-Chr8:11438195 Cone9ag1037 Cone-Chr9:5554390 8.70E-107 dispersed
Cone9ag1037 Cone-Chr9:5554390 Cone9ag1057 Cone-Chr9:5762145 5.61E-234 dispersed
Cone9ag1036 Cone-Chr9:5546112 Cone9ag1037 Cone-Chr9:5554390 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83189 PF08372 PRT_C 2.10E-77 CL0484 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1037 - - - 0.0