Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1046 ATGCGAACCAACACCTTTTATCAGAGAGTTTTTAAGGCTCTCCAGGAGCATCCTTCGTTCTCTAAGCTCCTCGTCGTCTTCACCGTCAGTGGTGGGAGCCTATTGGCTTTTGCCGATGCCAGCCCAAGCAGCAGTGCACGGAGTATCGTCACATCTGAAGTAGCTGGGGATGAGAAAAAGAAGAAAGTGGTTGTGCTTGGAACTGGTTGGGCTGGAACAAGTTTCTTGAGGAATCTCAAAGATCCGTCGTATGAGGTTCAAGTGATATCACCTCGTAATTATTTTGCCTTTACCCCATTGTTGCCAAGTGTTACCTGTGGTACAGTGGAAGCTCGCAGTATTGTTGAGCCAGTCCGGAATATTGTTAGGAAGAAAAATGTAGAGGTTCAATTCCATGAAGCTGAATGTTACAAGATTGATGCAGCAAACAAGAAAATTTATTGTCGAGCTAATCAAAAGCACAAACTGGATGGGAAAGAGGAATTTGTTGTGGACTATGACTACCTCATAGTAGCTGTTGGAGCACAGGTTAATACATTCAATACTCCTGGTGTGGTGGAGAATTGCCTTTTTTTGAAGGAAGTGGAAGACGCTCAAAAAATTCGAAGGACTGTTATTGACTGTTTTGAAAGGGCAAGTCTTCCTACTCTGAATGATGAGGAAAGAAAAAGAATTCTTCATTTTGCTATTGTTGGTGGTGGACCAACGGGCGTGGAGTTTGCTGCAGAGCTTCATGACTTTGTCAACGAGGATATAGTCAAATTATATCCTGGAGCTAAAGATCTAGTCACAATAACTCTTCTTGAGGCCGGAGATCATATTCTTAGCATGTTTGACAAAAGAATCACTGCTTTTGCTGAAGCAAAGTTCCGAAGAGAAGGTATTCAACTTAAAACAGGATCAATGGTTGTCAAAGTATCTGATAAAGAAATTTCTACAAAAGAGATGAAAACTGGAGAACTTTCTACTCTGCCTTATGGAATGGCTGTTTGGTCAACTGGAATTGGAACTCGTCCTATCATAAAAGATTTCATGACACAGATTGCTCAGGCTAATAGGCGTGCTTTAGCAACTGATGAGTGGCTGCGAGTTGAGGGAACTGACACTGTATATGCACTTGGTGATTGCGCCACAATAAATCAGCGAAAGGTCATGGAAGATATCTCCGCAATCTTTAGGAAGGCAGATACAGACAATTCAGGAACTCTTACCGTCAAAGAATTTCTAGAAGTCATTGATGACATCTGTGAAAGGTACCCTCAGGTGGAGCTTTATTTGAAGAGTAGACAGATGGGTGATATCGCCGATCTCTTGAAGGAATCAAAAGGTAACGTTGCAAAGGAATCCATCGAGTTAAACATTGAAGAATTTAAATCCGCCCTTTCGCAGGTGGATTCTCAGATGAAATTCCTCCCTGCTACAGCTCAGGTTGCATCTCAGCAAGGTGTTTACCTAGCTAACTGTTTTAACCGTATGGAAGAATGCGAAAGGAATCCTGAAGGTCCTATAAGATTCAGAGAATCAGGTCGTCATCGTTTTCGGCCCTTTAGGTACAAGCATCTTGGACAATTTGCTCCATTGGGAGGAGAGGAAACAGCAGCACAACTGCCTGGAGATTGGGTCTCTATTGGCCATAGCAGCCAGTGGCTCTGGTACTCTGTCTATGCCAGCAAGCAAGTCAGCTGGCGGAATAGAGCACTGGTGGTATCGGACTGGGCAAAGCGTTTTATCTTCGGGAGGGATTCAAGTCAAATATGA 1758 43.29 MRTNTFYQRVFKALQEHPSFSKLLVVFTVSGGSLLAFADASPSSSARSIVTSEVAGDEKKKKVVVLGTGWAGTSFLRNLKDPSYEVQVISPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVRKKNVEVQFHEAECYKIDAANKKIYCRANQKHKLDGKEEFVVDYDYLIVAVGAQVNTFNTPGVVENCLFLKEVEDAQKIRRTVIDCFERASLPTLNDEERKRILHFAIVGGGPTGVEFAAELHDFVNEDIVKLYPGAKDLVTITLLEAGDHILSMFDKRITAFAEAKFRREGIQLKTGSMVVKVSDKEISTKEMKTGELSTLPYGMAVWSTGIGTRPIIKDFMTQIAQANRRALATDEWLRVEGTDTVYALGDCATINQRKVMEDISAIFRKADTDNSGTLTVKEFLEVIDDICERYPQVELYLKSRQMGDIADLLKESKGNVAKESIELNIEEFKSALSQVDSQMKFLPATAQVASQQGVYLANCFNRMEECERNPEGPIRFRESGRHRFRPFRYKHLGQFAPLGGEETAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRNRALVVSDWAKRFIFGRDSSQI 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5669504 5674272 - Conep09aG0107700.1 Cone9ag1046 445209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1046 585 Gene3D - 53 404 - -
Cone9ag1046 585 Gene3D - 429 584 - -
Cone9ag1046 585 SUPERFAMILY EF-hand 376 472 IPR011992 -
Cone9ag1046 585 ProSitePatterns EF-hand calcium-binding domain. 396 408 IPR018247 -
Cone9ag1046 585 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 429 584 - -
Cone9ag1046 585 SMART efh_1 387 415 IPR002048 GO:0005509(InterPro)
Cone9ag1046 585 ProSiteProfiles EF-hand calcium-binding domain profile. 383 418 IPR002048 GO:0005509(InterPro)
Cone9ag1046 585 Pfam Pyridine nucleotide-disulphide oxidoreductase 61 382 IPR023753 GO:0016491(InterPro)
Cone9ag1046 585 Pfam NDH2 C-terminal domain 520 581 IPR054585 -
Cone9ag1046 585 PRINTS FAD-dependent pyridine nucleotide reductase signature 227 245 - -
Cone9ag1046 585 PRINTS FAD-dependent pyridine nucleotide reductase signature 166 184 - -
Cone9ag1046 585 PRINTS FAD-dependent pyridine nucleotide reductase signature 63 82 - -
Cone9ag1046 585 PANTHER NADH DEHYDROGENASE 52 585 IPR045024 GO:0003954(InterPro)|GO:0006116(InterPro)
Cone9ag1046 585 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 51 412 - -
Cone9ag1046 585 SUPERFAMILY FAD/NAD(P)-binding domain 60 279 IPR036188 -
Cone9ag1046 585 Coils Coil 447 467 - -
Cone9ag1046 585 SUPERFAMILY FAD/NAD(P)-binding domain 220 380 IPR036188 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag1493 Cone-Chr8:11353829 Cone9ag1046 Cone-Chr9:5669504 7.01E-283 dispersed
Cone12ag1429 Cone-Chr12:10380651 Cone9ag1046 Cone-Chr9:5669504 1.09E-283 wgd
Cone6ag1051 Cone-Chr6:6132461 Cone9ag1046 Cone-Chr9:5669504 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1046 K03885 - csv:101204145 988.023