Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1057 ATGAGAGCTAATAACATTCTCCTACTACTCTCATCTTTCTTCTTCTTCTTCTTCACCTTAACAACCTCCATTGACACCTTAACTTCATCTCAATCCCTCACAAAAGACCAGACCCTTCTCTCTTCTTCTTCAATCTTCGAGCTCGGCTTCTTCAACCCTTCAGATTCCAAATGGTACTTAGGAATCTGGTACAAGAACATTCCCGACAAAACCATCGTATGGGTCGCAAATAGAGACAGCCCTCTGTCCAATTCCTCTGCTTTGTTCAAGATCGGACCAGACGGTAAAAACATAGTCCTTCTCGACCAATCAGGCACCCTCAAATGGTCGTCCAACAACACTAAGTTCGCTTCTAATCCTTCCATACAGCTTCTAGATTCAGGAAATCTCGTTCTTACAGATTCAAAGGAAAACTCAGAAGATTATCTGTGGCAGAGCTTTGATTTTCCTACGGATACTCTGCTTCCAGATATGAAGCTCGGATGGGATTTAAACAGTGGAACCGATCGATTCCTACAGTCCTGGAAAAACCCAGACGACCCTTCGTCAGGAGATTTATCCTTCAACCTAGATTTCCACGGATTCCCAGAAATTTTCCTTCTATCCAAACAGAACAGAGTATACAGAAGTGGGCCGTGGAACGGGCTTAGATTCAGCGGCGTGCCAGAAATGGCGCCGTTGGATGGTTTAAGCTTCACCTTCGTCACAAACCAAGACGAGGTATACTACTCCTTCTCGACCTCAAACAAATCGTTGATTTCACGATTGGTAATGAACTCATCAGGCGCTCTTGAACGCTACATGTGGATTCCGACCAGCCAGACGTGGCATAGATTCTGGTACGCGCCGAAAGATCAGTGCGATAACTACAGAGAGTGCGGTCCGTACGGAATCTGCGACACGAACTCTTCGCCCGTGTGCAAATGCGTGCAAGGGTTTCAACCGAAGAGTGTGCAGGCGTGGAGTCTAAGAGATGGGTCTGGTGGGTGTGTGAGAAAAACAGAGTTGGACTGCTCGGACGATGGATTTGTGGAGATGGGTAATCTGAAGGTGCCGGATAGTAGTGGAGCGGTTGTTGTTGATGAGAAGATGAGTGTCGATAAGTGCAAAGAGGTTTGCTTGAGGAATTGTTCTTGTACTGCGTTTTCTGATTGGGATATTATAAACGGCGGTTCTGGTTGCGTTTTATGGTTTGCTGAGTTGCTTGATATGAGGCTTTACGAACAGGGTGGGCAGAGACTCTTCATCAGATTAGCTGCTTCTGATCTCGGCAATGTTGGGAGTGTAAGTTCGAAAAACTCGAAAAGAGTAATTGTAATCACAGTGATTGCAATCTGCATTGCAATCCTACTATCCATAACTATTGTCTGTATACTATGGAAGAGAAAGACATTACAAGCTCTAAGGAAAGGAAACAGGGATCAGAATGAATCAGGTCCTGAAAGAAGCCAGGATTTACTAATAAACCAGGTGGTTATTTCAAGCAAGAGAGATTTCTCCGGCGAGAAGTGTGGTGAAGACGAGCTTGAACTACCTTTGTTCGATTTTGCAGCCATAGTGTTAGCTACAGAAAACTTCTCTGAAGATAATAGACTAGGACAAGGTGGTTTTGGTATTGTTTATAAGGGTAGGTTGCCTGAAGGCCGAGATATTGCCGTGAAGAGGCTTTCTAAGAATTCTGGACAAGGAATTGAAGAGTTTAAGAATGAGGTGAAGTTAATTGCAAGGCTTCAACATAGAAATCTTGTTCGGTTATTAGGTTGCTGCATTGAGATGGAAGAAAAGATGCTCATTTATGAGTACATGGAAAATAGAAGCCTCGATGCCGTTCTATTCAGTAAGATGAGGAAAACTTTATTGGACTGGCCGTGCCGGTTTAACATAATTTGTGGGATTGCTAGAGGGCTTCTTTATCTTCACCAAGATTCCAGGTTTAGGATCATCCATAGAGATCTCAAGGCAAGTAACATTCTACTTGATAGAGATATGGACCCAAGAATATCGGATTTTGGCATGGCCAGAATTTTCGGGACGGATCAGACCGAAGCAAATACAGTAAAAGTGGTGGGAACATACGGTTACATGTCTCCTGAATATGCAATGGATGGGGTTTTTTCGGTAAAATCTGACGTTTTCAGTTTCGGTGTACTGGTGCAAGAGATCATTAGCGGTAAAAAGAACAGAGGATTCTACTACGCAAACAACGAACTTAACCTTCTTGGATACGCATGGAATCTGTGGAGAGAAGGAAAGGGATTGGAGCTAGTGGATTCTAGTATGAATGATTCATGTTCACCATCTGAAGTGCTTAGATGTATACAAGTCGGTCTCTTATGTGTACAAGAACGAGCAGAGGATCGACCAAACATGTCTTCCGTTGTATTGATGTTGAGTAGTGAAACGGCAATAATGCCTGAACCGAAAAACCCGGGATTTTGCCTTGGAAGGGGTCTTGGTGAAACTGATTCATCTTCTAGTAAGCAGGAAGAAACATTCACTGTAAATCAAGTTACTGTCACAGTACTAGATGCTAGGTAG 2538 43.5 MRANNILLLLSSFFFFFFTLTTSIDTLTSSQSLTKDQTLLSSSSIFELGFFNPSDSKWYLGIWYKNIPDKTIVWVANRDSPLSNSSALFKIGPDGKNIVLLDQSGTLKWSSNNTKFASNPSIQLLDSGNLVLTDSKENSEDYLWQSFDFPTDTLLPDMKLGWDLNSGTDRFLQSWKNPDDPSSGDLSFNLDFHGFPEIFLLSKQNRVYRSGPWNGLRFSGVPEMAPLDGLSFTFVTNQDEVYYSFSTSNKSLISRLVMNSSGALERYMWIPTSQTWHRFWYAPKDQCDNYRECGPYGICDTNSSPVCKCVQGFQPKSVQAWSLRDGSGGCVRKTELDCSDDGFVEMGNLKVPDSSGAVVVDEKMSVDKCKEVCLRNCSCTAFSDWDIINGGSGCVLWFAELLDMRLYEQGGQRLFIRLAASDLGNVGSVSSKNSKRVIVITVIAICIAILLSITIVCILWKRKTLQALRKGNRDQNESGPERSQDLLINQVVISSKRDFSGEKCGEDELELPLFDFAAIVLATENFSEDNRLGQGGFGIVYKGRLPEGRDIAVKRLSKNSGQGIEEFKNEVKLIARLQHRNLVRLLGCCIEMEEKMLIYEYMENRSLDAVLFSKMRKTLLDWPCRFNIICGIARGLLYLHQDSRFRIIHRDLKASNILLDRDMDPRISDFGMARIFGTDQTEANTVKVVGTYGYMSPEYAMDGVFSVKSDVFSFGVLVQEIISGKKNRGFYYANNELNLLGYAWNLWREGKGLELVDSSMNDSCSPSEVLRCIQVGLLCVQERAEDRPNMSSVVLMLSSETAIMPEPKNPGFCLGRGLGETDSSSSKQEETFTVNQVTVTVLDAR 845
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5762145 5766969 + Conep09aG0108800.1 Cone9ag1057 445220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1057 845 ProSiteProfiles Bulb-type lectin domain profile. 24 145 IPR001480 -
Cone9ag1057 845 ProSiteProfiles Protein kinase domain profile. 526 803 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag1057 845 Pfam Domain of unknown function (DUF3403) 799 845 IPR021820 GO:0004674(InterPro)
Cone9ag1057 845 Gene3D Transferase(Phosphotransferase) domain 1 602 806 - -
Cone9ag1057 845 Pfam S-locus glycoprotein domain 208 317 IPR000858 GO:0048544(InterPro)
Cone9ag1057 845 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 181 IPR036426 -
Cone9ag1057 845 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 602 805 - -
Cone9ag1057 845 Pfam Protein tyrosine and serine/threonine kinase 529 794 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone9ag1057 845 SMART blect_4 30 150 IPR001480 -
Cone9ag1057 845 Pfam PAN-like domain 338 404 IPR003609 -
Cone9ag1057 845 Gene3D Phosphorylase Kinase; domain 1 502 601 - -
Cone9ag1057 845 CDD STKc_IRAK 532 797 - -
Cone9ag1057 845 Pfam Receptor serine/threonine kinase 481 516 IPR022126 GO:0004674(InterPro)
Cone9ag1057 845 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 15 812 - -
Cone9ag1057 845 CDD PAN_AP_plant 334 419 - -
Cone9ag1057 845 Pfam D-mannose binding lectin 71 176 IPR001480 -
Cone9ag1057 845 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 147 - -
Cone9ag1057 845 ProSiteProfiles PAN/Apple domain profile. 338 419 IPR003609 -
Cone9ag1057 845 SMART serkin_6 526 795 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag1057 845 ProSitePatterns Serine/Threonine protein kinases active-site signature. 647 659 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone9ag1057 845 CDD B_lectin 30 150 IPR001480 -
Cone9ag1057 845 Gene3D - 19 147 IPR036426 -
Cone9ag1057 845 SUPERFAMILY Protein kinase-like (PK-like) 510 797 IPR011009 -
Cone9ag1057 845 PIRSF SRK 1 845 IPR024171 GO:0004674(InterPro)
Cone9ag1057 845 SMART ntp_6 338 418 IPR003609 -
Cone9ag1057 845 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 491 601 - -
Cone9ag1057 845 ProSitePatterns Protein kinases ATP-binding region signature. 532 554 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone9ag0122 Cone-Chr9:534273 Cone9ag1057 Cone-Chr9:5762145 1.24E-202 dispersed
Cone9ag0123 Cone-Chr9:537676 Cone9ag1057 Cone-Chr9:5762145 4.46E-272 dispersed
Cone9ag1036 Cone-Chr9:5546112 Cone9ag1057 Cone-Chr9:5762145 3.48E-221 dispersed
Cone9ag1037 Cone-Chr9:5554390 Cone9ag1057 Cone-Chr9:5762145 5.61E-234 dispersed
Cone9ag1057 Cone-Chr9:5762145 Cone9ag1060 Cone-Chr9:5810152 1.13E-256 dispersed
Cone9ag1057 Cone-Chr9:5762145 Cone9ag1058 Cone-Chr9:5768217 7.41E-186 tandem
Cone12ag1413 Cone-Chr12:10327058 Cone9ag1057 Cone-Chr9:5762145 5.39E-140 wgd
Cone6ag1065 Cone-Chr6:6254890 Cone9ag1057 Cone-Chr9:5762145 0 wgd
Cone6ag0103 Cone-Chr6:501150 Cone9ag1057 Cone-Chr9:5762145 1.35E-260 wgd
Cone9ag0121 Cone-Chr9:528827 Cone9ag1057 Cone-Chr9:5762145 5.82E-214 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83191 PF13639 zf-RING_2 6.10E-13 CL0229 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1057 - - - 0.0