Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1058 ATGATTCCAAACACTGTTTTCGATCCAATATTTGTCTATACTAAGAATGAAGTGTACTATACATTTGAAGCCACAGACAGTAACACTTCAAGATATGTGTTATATTATTCCGGGTTAGTTCAACACACTACATGGGTAAACTCGAGTTGGAGCTTTGTTTTCACTCCTCAAGAAGATCGTTGTGACAATTATAACCAATGTGGTGTTTATGGGAGTTGTGAAATGATTCCTTTCACAAGTTGTGAATGTTTAAGCGGGTTTGAGCCCCGATTGCCTCAAGACTGGAATAGGTTTGTGTGGTCAGGGGGATGTGTTAGGAAGGATTTCAATATTTGCGGGAATGGAGAAGGGTTCAAAAAGTTCTCGGGACTAAAACTGCCTGAAGCATTGGAGAATGAATTAAACATTAGTAATTTAAGTCTTAAAGATTGTGAGGCCAAGTGTTTGAGGGATTGTTCTTGCACGGCCTATACTCAACTGGACTTAACTGGGAGTGGAACTAGCTGTGTTACTTGGTTTGGAGATTTGAAGGATATTCGAGTAGCTTCTGCGAACGGTCAAGATCTCTATGTGAGGGTTGCTGCTTCTGTATTAGCAGTGTTGTTCCTCTTGGTTTTCATCAGCTCGTTTGTCCTGAAAAAAAGAAGAAAGAGTGCTAAAGGTCACTGGGAAAACTATGGATTCATCATCTCCGATATTCAGAATCGAGAGAATGGCCTTAAGATGCCATTATTTGATATTGCTGTCATTGAAGCTGCCACAAACAACTTCTCGGCTTCTAATAAAATTGGGGAGGGTGGATTTGGACCTGTCTACAAGGGAGAGCTTCCTTCAGGACAAGAAGTTGCAATAAAAAGGCTATCAAAAAATTCCGGGCAAGGCTTAGAGGAGTTTAAGAATGAGATTCTTCTGATTGCAAATCTTCAACATAGAAATCTTGTCAAACTCCTTGGTTGCTGTATTCAAAGAGAAGAAAGACTATTAATCTACGAGTATATGCCCAACAAAAGTTTAGACAACTTTATTTTCGATGATACAAGGCGTCCTTTGCTAAAATGGAATCAAAGACTAGAAATTATTATTGGCATTGCTCGGGGGCTGCTTTATCTTCACAGGGACTCAAGACTCAGAATCATACATAGAGATCTAAAAATCAGCAATGTTTTGTTAGACAGTGAGATGAATCCTAAAATATCCGATTTTGGGATGGCTAGAATATTTGGTGAAGATAAAATTCCAAGAAGAACAAGAAGGGTTGTCGGAACCTATGGTTACATGTCTCCGGAATATGCAATAGATGGGTACTTCTCTATAAAATCCGATGTATTTAGCTTTGGAGTTGTAGTTTTGGAGATAATTAGTGGTAAGAGGAATAGAGGGTTTTTCCATCGAGATCATCAGCTAAATCTACTTGGTCATGCATGGCAACTGTGGAATGAAGAAAGGCCATTGGAATTAATGGATACAGACTTAATGAATGATTTTTCGGATGTAGAAGCAATGAGATGCATTCATGTTGGTCTTTTATGTGTTCAACAATGCTCGGAAGATAGGCCGACAATGTCGTCTGTTCTTTTGATGTTGGATAATGACACTGAGCTGATAACAAAACCAGGGCAACCGGGATTTTGTTCAGACAGGACTATTAATGAGACAGTTTTTCCGGTAGCAGGAAGTATGGCCTCTTGTTCAAATGAGGTAACTGTTTCATTGTTGTATGGTCGTTAA 1728 39.12 MIPNTVFDPIFVYTKNEVYYTFEATDSNTSRYVLYYSGLVQHTTWVNSSWSFVFTPQEDRCDNYNQCGVYGSCEMIPFTSCECLSGFEPRLPQDWNRFVWSGGCVRKDFNICGNGEGFKKFSGLKLPEALENELNISNLSLKDCEAKCLRDCSCTAYTQLDLTGSGTSCVTWFGDLKDIRVASANGQDLYVRVAASVLAVLFLLVFISSFVLKKRRKSAKGHWENYGFIISDIQNRENGLKMPLFDIAVIEAATNNFSASNKIGEGGFGPVYKGELPSGQEVAIKRLSKNSGQGLEEFKNEILLIANLQHRNLVKLLGCCIQREERLLIYEYMPNKSLDNFIFDDTRRPLLKWNQRLEIIIGIARGLLYLHRDSRLRIIHRDLKISNVLLDSEMNPKISDFGMARIFGEDKIPRRTRRVVGTYGYMSPEYAIDGYFSIKSDVFSFGVVVLEIISGKRNRGFFHRDHQLNLLGHAWQLWNEERPLELMDTDLMNDFSDVEAMRCIHVGLLCVQQCSEDRPTMSSVLLMLDNDTELITKPGQPGFCSDRTINETVFPVAGSMASCSNEVTVSLLYGR 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5768217 5772114 + Conep09aG0108900.1 Cone9ag1058 445221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1058 575 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 49 544 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cone9ag1058 575 ProSiteProfiles Protein kinase domain profile. 257 535 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag1058 575 SMART ntp_6 113 193 IPR003609 -
Cone9ag1058 575 CDD PAN_AP_plant 113 194 - -
Cone9ag1058 575 Pfam S-locus glycoprotein domain 10 90 IPR000858 GO:0048544(InterPro)
Cone9ag1058 575 Pfam Protein tyrosine and serine/threonine kinase 259 524 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone9ag1058 575 Gene3D Transferase(Phosphotransferase) domain 1 333 537 - -
Cone9ag1058 575 ProSiteProfiles EGF-like domain profile. 57 93 IPR000742 -
Cone9ag1058 575 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 214 332 - -
Cone9ag1058 575 SUPERFAMILY Protein kinase-like (PK-like) 242 544 IPR011009 -
Cone9ag1058 575 SMART serkin_6 257 535 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag1058 575 Pfam PAN-like domain 112 179 IPR003609 -
Cone9ag1058 575 CDD STKc_IRAK 263 530 - -
Cone9ag1058 575 ProSiteProfiles PAN/Apple domain profile. 112 194 IPR003609 -
Cone9ag1058 575 Gene3D Phosphorylase Kinase; domain 1 229 332 - -
Cone9ag1058 575 ProSitePatterns Serine/Threonine protein kinases active-site signature. 378 390 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone9ag1058 575 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 333 536 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1066 Cone-Chr6:6260212 Cone9ag1058 Cone-Chr9:5768217 7.08E-71 dispersed
Cone6ag1067 Cone-Chr6:6274520 Cone9ag1058 Cone-Chr9:5768217 0 dispersed
Cone9ag1058 Cone-Chr9:5768217 Cone9ag1060 Cone-Chr9:5810152 2.90E-181 dispersed
Cone9ag1057 Cone-Chr9:5762145 Cone9ag1058 Cone-Chr9:5768217 7.41E-186 tandem
Cone9ag1058 Cone-Chr9:5768217 Cone9ag1059 Cone-Chr9:5793588 1.37E-110 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83192 PF13639 zf-RING_2 8.20E-13 CL0229 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1058 - - - 0.0