Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1060 ATGAATCCAACAAAATTATATTTTTATCCTCCTCCTCTTCTTCTTCTTCATCTAGTAATTTTCCAGTTCTGTATAGCCCTTGAGATCAATAACAAACTGTCTTCAAACGACATCGTACGGGATGGAGATATATTCGTTTCCAGAAACAAAACCTTTGCTCTTGGCTTCTTCAGCCCCGGAGACTCACCTCGCCGGTATGTCGGAATTTGGTACAACAAAATTCCTGACCAAACAGTTGTCTGGGTCGCCAACAGAGACAACCCTCTCAACGATACGTCGGGCGCTCTTTCCATCAACACCCGTGGAAACCTCATAATTTACACAAAAACCCCAGATGTTCCTCTCTGGTCAACTAACATTTCATCACTCTCCTCAACAAAACCCGGTACCATGGCCAAGCTTCTAGATTCAGGGAATCTTGTTATAACTCAACAGGAGAGCCAAGAGATTATTTGGCAAAGCTTTGATTACCCTACAAACACCTTGCTTCCGTATATGAAACTTGGGTTGGACAGACGAACCGGGTTTAACCGGATCCTAACTTCTTGGAAGGCGGTCAATGATCCGGCAACAGGAAATTTCTCATACAGAATTGACCCGACTGGGTTTCCTCAGTTGTTTTTAGACAAAGGCCGGTCTCCATGGTGGCGGGGTGGGCCCTGGACCGGACATAGATGGAGCGGCGTGCCGGCGATGACACCTAACTTTATATTTAATGTTAGTTATGTGAATAATATTAGTGAACTATCTATAGTATATGGTGTTACTAATAACTCAATAGTTACGAGAATGGCGTTGGACGAATCGGGATTCATCCGACGGGCCACATGGAACGATAAGGACCGGAAATGGTTCGAGTTTTGGTCCGCCCCAGTCGAGTGGTGTGACAAGTACGGTCAATGTGGTCCGAATAGTAATTGTGACCTGGACCGGACAGACGTATTTGTGTGCACTTGCTTACCCGGGTTCGAACCCAAGTCGGCCCAAGATTGGTACTTGAGAGACGGGTCAAGTGGGTGTGTGAGGAAGCAAAATGAATCCACGTGTCGAAGTGGGGAAGGGTTTGTGAAGGTGTCACGAGTGAAGGTGCCCGACACATCGGTGGCGCGTGTGAACATGAGTTTGAGCTTGGAAGCGTGTCAGAAAGAGTGCTTGATGAATTGTTCGTGCGTGGCTTACACGAGTGCGGATGACAGTGCGGGAGGGACTGGGTGCGTGATGTGGCATGGGGATTTAGTGGATACGAGGACCTACGCTGCTGCTGCGGGTCAAGATTTGTACGTACGTGTTGATGCAGCTGAATTAATTGTTCAAAATTCAAAGCCTTCATCAGGTAAATCTGCGAAGAAGAGGAAGGTAATAATTCTTGTGACAACCACAGTAACATCAATGCTCCTGGTGGCATTTTCAGTATATTGCTTAGTGACTAAGAATAAAAAAGAAAGGGGAAGTAATAGCCCATGTGGATTAAGTATGACCACGAGTAATGCGTCGACATTCTTAATGGGCGACTCTTCGGGTGTGAATAAGTTGGAAAAAGGTAGAACGAACTCAGCTCTTCCGTTGTTTGATCTAAGCACAATACTGATAGCAACAGACAATTTCTCCTTTGCTAACAAGCTTGGTGAAGGTGGTTTTGGCACAGTTTATAAGGGGGTGCTCTATGATGGAAAAGAAATAGCAGTAAAAAGACTAAGCAAGCATTCAGGGCAAGGAATACAAGAGCTCAAGAATGAAATAACATTGATAGCAAAACTCCAACACAGAAACCTGGTCAAGATTTTAGGCTCTTGTATCCAAGATGAAGAGAAGTTGCTCGTTTATGAATATTTGCCTAACAAAAGCTTGGACTCTTTTATCTTTGATGAAAGGAAAAAAGAACTTTTAGATTGGAAAAAACGTTCTGAAATCATTGTTGGTGTAGCTCGTGGAATGTTATATCTTCATCAAGATTCGAGATTAAGAATAATTCATAGAGACCTAAAGGCGAGCAATGTCCTATTAGGTGCCGATTTGAACCCTAAAATAGCAGATTTTGGTATGGCAAGAATTTTCGGAGGGGATCAAATAGAAGCCAATACTACTCGAGTTGTTGGAACATACGGTTATATGTCTCCGGAATATGCAATGGAAGGATTATTTTCAATAAAGTCAGACGTATACAGTTTTGGAGTTTTGCTCTTAGAGATCATTACTAGCAGAAAGAACAACAATTACTACCATGACGAATCATCTTTGAATTTAGTCGGACATGTTTGGAAGCTATGGAAAGAAGGGAGAGGGATGGAAATAGTGGACACAGCCTTGGATGAATCGGAGTATGGTGAGATTGTAAGATACATACATATTGGGCTGTTGTGCGTGCAGGAGCAGGCAGTAGATCGACCCAACATGTCGGCAGTTGTGTTCATGTTAAGCAATGACGTGCCACTTCCGACCCCAAAACAGCCTGCTTTCATTATAAAGAGAAACTATACTAGCAATCACGGCACAGATCCGTCTACTAGTGAAGGAGCTAATTCTGTGAATGACGTTACTTTTACTATTCTTGAAGCACGTTAA 2562 43.4 MNPTKLYFYPPPLLLLHLVIFQFCIALEINNKLSSNDIVRDGDIFVSRNKTFALGFFSPGDSPRRYVGIWYNKIPDQTVVWVANRDNPLNDTSGALSINTRGNLIIYTKTPDVPLWSTNISSLSSTKPGTMAKLLDSGNLVITQQESQEIIWQSFDYPTNTLLPYMKLGLDRRTGFNRILTSWKAVNDPATGNFSYRIDPTGFPQLFLDKGRSPWWRGGPWTGHRWSGVPAMTPNFIFNVSYVNNISELSIVYGVTNNSIVTRMALDESGFIRRATWNDKDRKWFEFWSAPVEWCDKYGQCGPNSNCDLDRTDVFVCTCLPGFEPKSAQDWYLRDGSSGCVRKQNESTCRSGEGFVKVSRVKVPDTSVARVNMSLSLEACQKECLMNCSCVAYTSADDSAGGTGCVMWHGDLVDTRTYAAAAGQDLYVRVDAAELIVQNSKPSSGKSAKKRKVIILVTTTVTSMLLVAFSVYCLVTKNKKERGSNSPCGLSMTTSNASTFLMGDSSGVNKLEKGRTNSALPLFDLSTILIATDNFSFANKLGEGGFGTVYKGVLYDGKEIAVKRLSKHSGQGIQELKNEITLIAKLQHRNLVKILGSCIQDEEKLLVYEYLPNKSLDSFIFDERKKELLDWKKRSEIIVGVARGMLYLHQDSRLRIIHRDLKASNVLLGADLNPKIADFGMARIFGGDQIEANTTRVVGTYGYMSPEYAMEGLFSIKSDVYSFGVLLLEIITSRKNNNYYHDESSLNLVGHVWKLWKEGRGMEIVDTALDESEYGEIVRYIHIGLLCVQEQAVDRPNMSAVVFMLSNDVPLPTPKQPAFIIKRNYTSNHGTDPSTSEGANSVNDVTFTILEAR 853
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5810152 5814106 + Conep09aG0109100.1 Cone9ag1060 445223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1060 853 ProSitePatterns Protein kinases ATP-binding region signature. 541 563 IPR017441 GO:0005524(InterPro)
Cone9ag1060 853 Pfam S-locus glycoprotein domain 216 327 IPR000858 GO:0048544(InterPro)
Cone9ag1060 853 Gene3D Phosphorylase Kinase; domain 1 501 610 - -
Cone9ag1060 853 Gene3D Transferase(Phosphotransferase) domain 1 611 810 - -
Cone9ag1060 853 PIRSF SRK 4 853 IPR024171 GO:0004674(InterPro)
Cone9ag1060 853 ProSiteProfiles EGF-like domain profile. 291 329 IPR000742 -
Cone9ag1060 853 CDD PAN_AP_plant 347 430 - -
Cone9ag1060 853 Gene3D - 25 155 IPR036426 -
Cone9ag1060 853 Pfam PAN-like domain 349 415 IPR003609 -
Cone9ag1060 853 SMART ntp_6 350 430 IPR003609 -
Cone9ag1060 853 SMART serkin_6 535 781 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag1060 853 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 502 610 - -
Cone9ag1060 853 ProSiteProfiles Bulb-type lectin domain profile. 30 155 IPR001480 -
Cone9ag1060 853 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 611 812 - -
Cone9ag1060 853 Pfam Domain of unknown function (DUF3403) 806 853 IPR021820 GO:0004674(InterPro)
Cone9ag1060 853 Pfam Protein tyrosine and serine/threonine kinase 537 801 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone9ag1060 853 SUPERFAMILY Protein kinase-like (PK-like) 515 805 IPR011009 -
Cone9ag1060 853 SUPERFAMILY alpha-D-mannose-specific plant lectins 65 221 IPR036426 -
Cone9ag1060 853 ProSiteProfiles PAN/Apple domain profile. 349 431 IPR003609 -
Cone9ag1060 853 ProSitePatterns Serine/Threonine protein kinases active-site signature. 656 668 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone9ag1060 853 CDD STKc_IRAK 541 805 - -
Cone9ag1060 853 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 34 817 - -
Cone9ag1060 853 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 25 155 - -
Cone9ag1060 853 Pfam D-mannose binding lectin 78 184 IPR001480 -
Cone9ag1060 853 SMART blect_4 36 158 IPR001480 -
Cone9ag1060 853 ProSiteProfiles Protein kinase domain profile. 535 819 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag1060 853 CDD B_lectin 46 158 IPR001480 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag1255 Cone-Chr15:9905960 Cone9ag1060 Cone-Chr9:5810152 2.42E-278 dispersed
Cone15ag1256 Cone-Chr15:9907803 Cone9ag1060 Cone-Chr9:5810152 1.83E-133 dispersed
Cone15ag1260 Cone-Chr15:9942343 Cone9ag1060 Cone-Chr9:5810152 0 dispersed
Cone9ag1025 Cone-Chr9:5436810 Cone9ag1060 Cone-Chr9:5810152 1.04E-82 dispersed
Cone9ag1057 Cone-Chr9:5762145 Cone9ag1060 Cone-Chr9:5810152 1.13E-256 dispersed
Cone9ag1058 Cone-Chr9:5768217 Cone9ag1060 Cone-Chr9:5810152 2.90E-181 dispersed
Cone9ag1060 Cone-Chr9:5810152 Cone9ag1065 Cone-Chr9:5949046 1.48E-124 dispersed
Cone9ag1059 Cone-Chr9:5793588 Cone9ag1060 Cone-Chr9:5810152 5.07E-113 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83194 PF13639 zf-RING_2 7.00E-13 CL0229 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1060 - - - 0.0