Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1062 ATGAAGAAGTACTACCCGTTCTCGATCAACTCAATACCAATCTTCCTCACGATCATTTTCGTCAATTTTAACTTAACTAACGCTAATCCAACCTACTTCTACCATATATGCTCCAACAAAACTACTTTCGCTCCAAACAGCACCTACCAAACCAACCTCAACCTTCTTTTCTCCATCCTCTCCACCAACGCCACCGTAAGCGGCGGTTTCTACAACGCCACTGTTGGCCGAACCTCCAACACCACCGTGTACGGCCTGTTCCAGTGCAGAGGTGACGTCACCACAACCGCATGTCAAGAGTGCGTCTCTTACGCAACAACCTACGTGGTCCGATCCGACATCTGCCCCATCGAAAAAGTTGTCATTATCTGGTTCGATGAATGCATTTTACACTATTCCGACACGTCGTTTTTCTCCACTATAGTGGAAGACCCTAATCAGTCTTTCCTCAACACGGGTGATATTGAAGTCGACATGGCTCGTTTTAACCAGCTAGTTCTTACCACATTGAGTAGTACTGCGGTTTTGGCGGGAAATAGTTCTTGGGCCGTCAAGAATTTTGCTGTCAAGGAAGCAGTTTTTACGGAGAATCAGACGCTTTATACGCTTGGACAGTGTACCTCGGATTTGTCGAGCGGGAATTGTACAACTTGTTTGCAAGATGCGGTTGGTAGGATTCCTAGTTGTTGTACTAATAAGCGAGGCGGTAGAGTTTTGTTTCCTAGTTGTTATGTGAGATACGAGGTTTACTCGTTTTACAATCTGAGCGGAACTCTGTTGGTGCCGCCAGCACCGGCGGGAGATAATTCCGTTCCTCCACTTCCTTCGGCAAAAGACCGAACAGGAAATGGTGGGATCTCAACAACTACAATTATCGCCATTGTTGTTCCCATTAGTGTCTCTGTTGTACTTTTCATCTTAGGCTGCTGTTTCCTTGTAAAGAGAAGAGCGCAGAAAAGATACATTCCTGTAAAAGAAGACAGTGTTGCTAATGAGATGATGACAGTAGAATCTTTGCAATTTGATCTCCATACAATCGAAGATGCAACGAACAAGTTCTCGGAGGATAACAAGTTGGGTGAAGGCGGTTTTGGTGAAGTATACAAGGGTAGACTTCCTAATGGTCAACAAGTAGCTGTGAAGAGGTTATCTAAGTACTCAGTGCAAGGTTCTGAGGAGTTTAAGAACGAGGTTGTGTTAGTTGCCAAGCTTCAACACAGGAATTTAGCAAGGCTTTTGGGATTTTGCTTGGAAGGAGAAGAGAAGATTCTAATTTACGAATATGTGCCGAACAAAAGCCTCGACTGTTTCCTATATGACCCTGAAAGACAAAAACAATTGGATTGGTCAAGACGGTACAACATAATCAGTGGGATTGCTCGCGGAATTCTTTATCTCCATGAAGATTCTCGACTTAAGATCATTCATCGTGACCTAAAGGCTAGCAATATCTTGTTAGACAATGATTTGAATCCAAAAATATCAGACTTCGGTATGGCAAGGATTGTTCGAGTTGATCAAACTCAAGGAAATACGAGCAGAATTGTTGGAACATATGGTTACATGTCTCCCGAGTATGCAATGCACGGGTTATTTTCTGTCAAGTCTGATGTGTATAGCTTTGGAGTCTTAGTCCTTGAGATCATTAGTGGCAAGAAAAACAGTAATTTCTATCTGTCAGATTGTGCTGAGGATCTTTTGAGCTATGCTTGGAAGCTTTGGAAAGATGGAGCACCCATAGAATTGTTAGATCCAAGTATCAGAAATTCTTACTCGAGAAATGAAGTCATTAGATGCATTCACATTGGTTTACTATGCGTGCAAGAGGATCCAGCTGATCGACCCTCTATGGCGAGTATTGTCCTTATGCTTAATAGCTACTCTGTTACTATTCCTTTGCCTGAAAAGCCGGCTTTTTTCATTGCGAGTAAAGATCATGGATTTCCGTTCAAGGTATTAGAATCCGATCAGTCTACAAGCAAGTCTATGCAATGGACCATCAATGAAGCATCCATAACTGAGCTAGACCCAAGATAA 2037 42.81 MKKYYPFSINSIPIFLTIIFVNFNLTNANPTYFYHICSNKTTFAPNSTYQTNLNLLFSILSTNATVSGGFYNATVGRTSNTTVYGLFQCRGDVTTTACQECVSYATTYVVRSDICPIEKVVIIWFDECILHYSDTSFFSTIVEDPNQSFLNTGDIEVDMARFNQLVLTTLSSTAVLAGNSSWAVKNFAVKEAVFTENQTLYTLGQCTSDLSSGNCTTCLQDAVGRIPSCCTNKRGGRVLFPSCYVRYEVYSFYNLSGTLLVPPAPAGDNSVPPLPSAKDRTGNGGISTTTIIAIVVPISVSVVLFILGCCFLVKRRAQKRYIPVKEDSVANEMMTVESLQFDLHTIEDATNKFSEDNKLGEGGFGEVYKGRLPNGQQVAVKRLSKYSVQGSEEFKNEVVLVAKLQHRNLARLLGFCLEGEEKILIYEYVPNKSLDCFLYDPERQKQLDWSRRYNIISGIARGILYLHEDSRLKIIHRDLKASNILLDNDLNPKISDFGMARIVRVDQTQGNTSRIVGTYGYMSPEYAMHGLFSVKSDVYSFGVLVLEIISGKKNSNFYLSDCAEDLLSYAWKLWKDGAPIELLDPSIRNSYSRNEVIRCIHIGLLCVQEDPADRPSMASIVLMLNSYSVTIPLPEKPAFFIASKDHGFPFKVLESDQSTSKSMQWTINEASITELDPR 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5835150 5838531 + Conep09aG0109300.1 Cone9ag1062 445225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1062 678 FunFam cysteine-rich receptor-like protein kinase 10 429 631 - -
Cone9ag1062 678 SUPERFAMILY Protein kinase-like (PK-like) 338 649 IPR011009 -
Cone9ag1062 678 SMART serkin_6 353 628 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag1062 678 FunFam Cysteine-rich receptor-like protein kinase 10 314 428 - -
Cone9ag1062 678 Gene3D - 29 137 IPR038408 -
Cone9ag1062 678 Gene3D - 146 252 IPR038408 -
Cone9ag1062 678 CDD STKc_IRAK 359 625 - -
Cone9ag1062 678 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 150 640 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0042742(PANTHER)
Cone9ag1062 678 ProSiteProfiles Protein kinase domain profile. 353 628 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag1062 678 Pfam Protein tyrosine and serine/threonine kinase 356 622 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone9ag1062 678 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 30 137 - -
Cone9ag1062 678 ProSiteProfiles Gnk2-homologous domain profile. 143 252 IPR002902 -
Cone9ag1062 678 ProSiteProfiles Gnk2-homologous domain profile. 31 137 IPR002902 -
Cone9ag1062 678 Gene3D Transferase(Phosphotransferase) domain 1 429 631 - -
Cone9ag1062 678 FunFam Cysteine-rich receptor-like protein kinase 25 145 252 - -
Cone9ag1062 678 Pfam Salt stress response/antifungal 161 249 IPR002902 -
Cone9ag1062 678 Pfam Salt stress response/antifungal 37 134 IPR002902 -
Cone9ag1062 678 ProSitePatterns Protein kinases ATP-binding region signature. 359 381 IPR017441 GO:0005524(InterPro)
Cone9ag1062 678 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone9ag1062 678 Gene3D Phosphorylase Kinase; domain 1 314 428 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1397 Cone-Chr12:10281423 Cone9ag1062 Cone-Chr9:5835150 9.34E-160 dispersed
Cone1ag0103 Cone-Chr1:541600 Cone9ag1062 Cone-Chr9:5835150 9.22E-180 dispersed
Cone2ag0735 Cone-Chr2:33085983 Cone9ag1062 Cone-Chr9:5835150 1.66E-113 dispersed
Cone8ag0680 Cone-Chr8:6804886 Cone9ag1062 Cone-Chr9:5835150 6.03E-106 dispersed
Cone9ag0402 Cone-Chr9:1857235 Cone9ag1062 Cone-Chr9:5835150 3.43E-16 dispersed
Cone9ag0413 Cone-Chr9:1912445 Cone9ag1062 Cone-Chr9:5835150 4.55E-96 dispersed
Cone9ag1062 Cone-Chr9:5835150 Cone9ag1065 Cone-Chr9:5949046 0 dispersed
Cone9ag1062 Cone-Chr9:5835150 Cone9ag1064 Cone-Chr9:5936205 1.11E-147 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83195 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1062 - - - 0.0