Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1065 ATGAAGTACTACCCCTTCTCGATCAAATCAATACCCACTTCCTTACTCATCTTTCTCACGTTCATCTTGGTCAATTTTAGCATAACTAACGCTAATCCATCCTACGTTTACCATGTATGCTCAAACGAAACAACTTTCACTCCAAACAGCACCTACCAATCCAACCTCAACCTCCTTTTCTCCATCCTCTCCACCAACGCCACCAGAAGCGGCGGTTTCTACAACGCCACTGTTGGCCGAACCTCCAACACCACCGTGTACGGCCTGTTCCAGTGCAGAGGTGACATCACCATCGACAAATGTCAAGAGTGCGTCTCTTACGCAATAACCTACGTGGTCCGACCCGAAATCTGCCCCATCGAAAAAGTTGTCATCATCTGGTTCGATGAGTGCATTTTACACTATTCCAACACGTCTTTTTTCTCCACTATAGTGGAAGCCCCTACTGTGTCTTTACTCAACACAATGGACATTCCAGTCGACATGACTCGTTTCAACCAGCTAGTTCTTACCACGTTGAGTAATACTGCGGTTTTGGCGGGAAATAGTTCTTCGGCCGTGAAAAATTTTGCTGTCCAGCAAGCGGTTTTTACGGAGAATCGGACGCTTTATACGCTTGGGCAGTGTACCTGGGATTTGTCGAGCGGGAATTGTAGAACTTGTTTGGAAGATGCGATTGGTGGGATTCCTAGTTGTTGTACTGGAAAGCAAGGTGGTAGAGTTTTGTATCCTAGTTGCTATGTGAGATATGAGATTTACCCGTTTTATAATCTGACCGGAACTCCGTTGGCGCCGCCGCCACGGGCCGGTGATAATTCTGTTCTTCCTCCTCCTTCGGCAAAAGACCGAACAGGAAATGGTGGGATCTCAACTACTACAATTATCGCCATTGTTGTTCCCATTAGTGTCTCTGTTGTACTTTTCATCTTAGGCTGCTGTTTCCTTGTAAGGAGAAGAGCGCAGATGAGACACATTCCTGTAAAAGAAGACAGTGTTGCTAATGAGATGATGACAGTAGAATCCTTGCAATTTGATCTCCATACAATCGAAGATGCAACGAACAAGTTCTCGGAGGATAACAAGTTGGGTGAAGGCGGTTTTGGTGAAGTATACAAGGGTAGACTTCCTAATGGTCAACAAGTAGCTGTGAAGAGGTTATCTAAGTACTCAGTGCAAGGTTCTGAGGAGTTTAAGAACGAGGTTGTGTTAGTTGCCAAGCTTCAACACAGGAATTTAGCAAGGCTTTTGGGATTTTGCTTGGAAGGAGAAGAGAAGATTCTAATTTACGAATATGTGCCGAACAAAAGCCTCGACTGTTTCCTATATGACCCTGAAAGACAAAAACAATTGGATTGGTCAAGACGGTACAACATAATCAGTGGGATTGCTCGCGGAATTCTTTATCTCCATGAAGATTCTCGACTTAAGATCATTCATCGTGACCTAAAGGCTAGCAATATCTTGTTAGACAATGATTTGAATCCAAAAATATCAGACTTCGGTATGGCAAGGATTGTTCGAGTTGATCAAACTCAAGGAAATACGAGCAGAATTGTTGGAACATATGGTTACATGTCTCCCGAGTATGCAATGCACGGGTTATTTTCTGTCAAGTCTGATGTGTATAGCTTTGGAGTCTTAGTCCTTGAGATCATTAGTGGCAAGAAAAACAGTAATTTCTATCTGTCAGATTGTGCTGAGGATCTTTTGAGCTATGCTTGGAAGCTTTGGAAAGATGGAGCACCCATAGAATTGTTAGATCCAAGTATCAGAAATTCTTACTCGAGAAATGAAGTCGTTAGATGCATTCACATTGGTTTACTATGCGTGCAAGAGGATCCAGCTGATCGACCCTCTATGGCGAGTATTGTCCTTATGCTTAATAGCTACTCTGTTACTATTCCTTTGCCTGAAAAGCCGGCTTTTGTCATTGCGAGTAAAGATCATGGATTTCCATTCAAGGTATTAGAGTCCGATCAGTCTACAAGCAAGTCTATGCAATGGACCATCAATGAAGCATCCATAACTGAGCTAGACCCAAGATAA 2046 43.26 MKYYPFSIKSIPTSLLIFLTFILVNFSITNANPSYVYHVCSNETTFTPNSTYQSNLNLLFSILSTNATRSGGFYNATVGRTSNTTVYGLFQCRGDITIDKCQECVSYAITYVVRPEICPIEKVVIIWFDECILHYSNTSFFSTIVEAPTVSLLNTMDIPVDMTRFNQLVLTTLSNTAVLAGNSSSAVKNFAVQQAVFTENRTLYTLGQCTWDLSSGNCRTCLEDAIGGIPSCCTGKQGGRVLYPSCYVRYEIYPFYNLTGTPLAPPPRAGDNSVLPPPSAKDRTGNGGISTTTIIAIVVPISVSVVLFILGCCFLVRRRAQMRHIPVKEDSVANEMMTVESLQFDLHTIEDATNKFSEDNKLGEGGFGEVYKGRLPNGQQVAVKRLSKYSVQGSEEFKNEVVLVAKLQHRNLARLLGFCLEGEEKILIYEYVPNKSLDCFLYDPERQKQLDWSRRYNIISGIARGILYLHEDSRLKIIHRDLKASNILLDNDLNPKISDFGMARIVRVDQTQGNTSRIVGTYGYMSPEYAMHGLFSVKSDVYSFGVLVLEIISGKKNSNFYLSDCAEDLLSYAWKLWKDGAPIELLDPSIRNSYSRNEVVRCIHIGLLCVQEDPADRPSMASIVLMLNSYSVTIPLPEKPAFVIASKDHGFPFKVLESDQSTSKSMQWTINEASITELDPR 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5949046 5952556 - Conep09aG0109600.1 Cone9ag1065 445228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1065 681 Gene3D Phosphorylase Kinase; domain 1 318 431 - -
Cone9ag1065 681 FunFam cysteine-rich receptor-like protein kinase 10 432 634 - -
Cone9ag1065 681 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 33 140 - -
Cone9ag1065 681 Pfam Salt stress response/antifungal 164 252 IPR002902 -
Cone9ag1065 681 Pfam Salt stress response/antifungal 40 137 IPR002902 -
Cone9ag1065 681 ProSitePatterns Protein kinases ATP-binding region signature. 362 384 IPR017441 GO:0005524(InterPro)
Cone9ag1065 681 Gene3D Transferase(Phosphotransferase) domain 1 432 634 - -
Cone9ag1065 681 ProSiteProfiles Gnk2-homologous domain profile. 34 140 IPR002902 -
Cone9ag1065 681 CDD STKc_IRAK 362 628 - -
Cone9ag1065 681 Gene3D - 32 140 IPR038408 -
Cone9ag1065 681 Gene3D - 149 255 IPR038408 -
Cone9ag1065 681 Pfam Protein tyrosine and serine/threonine kinase 359 625 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone9ag1065 681 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 166 643 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0042742(PANTHER)
Cone9ag1065 681 MobiDBLite consensus disorder prediction 267 286 - -
Cone9ag1065 681 SMART serkin_6 356 631 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag1065 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 477 489 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone9ag1065 681 ProSiteProfiles Gnk2-homologous domain profile. 146 255 IPR002902 -
Cone9ag1065 681 FunFam Cysteine-rich receptor-like protein kinase 10 317 431 - -
Cone9ag1065 681 ProSiteProfiles Protein kinase domain profile. 356 631 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag1065 681 FunFam Cysteine-rich receptor-like protein kinase 25 148 255 - -
Cone9ag1065 681 SUPERFAMILY Protein kinase-like (PK-like) 341 652 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0744 Cone-Chr13:7090410 Cone9ag1065 Cone-Chr9:5949046 2.56E-107 dispersed
Cone3ag1359 Cone-Chr3:32595693 Cone9ag1065 Cone-Chr9:5949046 4.56E-19 dispersed
Cone5ag1763 Cone-Chr5:12552587 Cone9ag1065 Cone-Chr9:5949046 6.66E-173 dispersed
Cone6ag1068 Cone-Chr6:6433993 Cone9ag1065 Cone-Chr9:5949046 5.63E-182 dispersed
Cone8ag0679 Cone-Chr8:6769285 Cone9ag1065 Cone-Chr9:5949046 3.43E-94 dispersed
Cone9ag1059 Cone-Chr9:5793588 Cone9ag1065 Cone-Chr9:5949046 0 dispersed
Cone9ag1060 Cone-Chr9:5810152 Cone9ag1065 Cone-Chr9:5949046 1.48E-124 dispersed
Cone9ag1062 Cone-Chr9:5835150 Cone9ag1065 Cone-Chr9:5949046 0 dispersed
Cone9ag1064 Cone-Chr9:5936205 Cone9ag1065 Cone-Chr9:5949046 3.75E-153 tandem
Cone2ag0735 Cone-Chr2:33085983 Cone9ag1065 Cone-Chr9:5949046 1.27E-113 transposed
Cone12ag1398 Cone-Chr12:10284460 Cone9ag1065 Cone-Chr9:5949046 1.17E-32 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83197 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1065 - - - 0.0