Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1074 ATGATCTCTTCTGTAAATCTCACCGCTTCATCTTTCAAACCTTCATCTTTCTCCAATCGAAAATTCTCAGTCTCTAACAATATCCCTCGCCCTTCTTCACTACTACAACCAGCTGGCCCGAATCAAAATAATCCTATTTCTCGCACAAAATCTCTTTTCATTTCGAATAATTTCTCTCTTCTGAGAAAAACCCAACAGAAGCGAGAAACAGATTGTAAAGCTTACGAGGCAGAGAAATCACGGCCGATTGAGATCAACATCGAGCTACCAGACGAACAGGCAGCTCAGAAAATCAAAATCAGTTTGTATTTTGCAACGTGGTGGGCTTTGAATGTGGTTTTCAATATTTACAACAAGAAGGTTTTGAATGCTTTTCCTTACCCATGGCTAACTTCCACTCTCTCTCTTGCTGCTGGTTCGCTTATCATGCTTATTTCTTGGGCTACCAAAATCGCCGACTTGCCCAAAACTGATCTCGATTTCTGGAAAGCATTATTTCCGGTTGCGGTGGCACATACAATAGGACACGTGGCAGCGACAGTGAGCATGTCAAAAGTGGCAGTTTCTTTCACTCACATTATCAAAAGCTCAGAGCCTGCTTTCAGTGTTCTGGTTTCCAGGTTTATGTTGGGTGATATGTTTCCTTTGCCTGTCTATCTCTCTCTCCTTCCCATTGTTGGTGGTTGTGCTCTTGCTGCTGTTACTGAGCTCTGTTTCAATATGACTGGTTTTATGGGTGCAATGATATCAAATTTGGCATTCGTGTTCAGAAACATATTCTCAAAAAAAGGGATGAATGGGAAATCTGTGAGTGGGATGAACTACTATGCCTGCCTCTCTATGCTGTCTCTCCTCATTCTCACTCCTTTTGCCATTGCTGTGGAGGGTCCACAGATGTGGGCTGCTGGATGGAACAATGCTCTTTCTCAGATTGGTCCCAATTTCGTATGGTGGGTCGTGGCCCAGAGTGTCTTCTATCACTTGTACAATCAAGTATCATACATGTCTCTAGACCAGATATCGCCATTAACATTTAGTGTAGGAAACACAATGAAGAGAGTAACAGTCATCGTATCCTCCATCATCATATTCCACACTCCCATTCAACCGGTCAATGCCCTTGGAGCAGCCATTGCCATCCTTGGTACCTTCCTCTACTCACAGGCAAAGAGGTAA 1176 43.28 MISSVNLTASSFKPSSFSNRKFSVSNNIPRPSSLLQPAGPNQNNPISRTKSLFISNNFSLLRKTQQKRETDCKAYEAEKSRPIEINIELPDEQAAQKIKISLYFATWWALNVVFNIYNKKVLNAFPYPWLTSTLSLAAGSLIMLISWATKIADLPKTDLDFWKALFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSSEPAFSVLVSRFMLGDMFPLPVYLSLLPIVGGCALAAVTELCFNMTGFMGAMISNLAFVFRNIFSKKGMNGKSVSGMNYYACLSMLSLLILTPFAIAVEGPQMWAAGWNNALSQIGPNFVWWVVAQSVFYHLYNQVSYMSLDQISPLTFSVGNTMKRVTVIVSSIIIFHTPIQPVNALGAAIAILGTFLYSQAKR 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6041529 6044154 - Conep09aG0110500.1 Cone9ag1074 445237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1074 391 SUPERFAMILY Multidrug resistance efflux transporter EmrE 141 234 - -
Cone9ag1074 391 PANTHER SOLUTE CARRIER FAMILY 35 96 390 IPR050186 GO:0005794(PANTHER)|GO:0015120(PANTHER)|GO:0015297(PANTHER)|GO:0071917(PANTHER)
Cone9ag1074 391 SUPERFAMILY Multidrug resistance efflux transporter EmrE 290 388 - -
Cone9ag1074 391 Pfam Triose-phosphate Transporter family 99 387 IPR004853 -
Cone9ag1074 391 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 99 390 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0098 Cone-Chr16:545209 Cone9ag1074 Cone-Chr9:6041529 5.31E-70 dispersed
Cone19ag0142 Cone-Chr19:787906 Cone9ag1074 Cone-Chr9:6041529 3.91E-68 dispersed
Cone2ag0910 Cone-Chr2:34906514 Cone9ag1074 Cone-Chr9:6041529 1.29E-67 dispersed
Cone6ag0991 Cone-Chr6:5437760 Cone9ag1074 Cone-Chr9:6041529 1.16E-75 dispersed
Cone9ag0995 Cone-Chr9:5133765 Cone9ag1074 Cone-Chr9:6041529 2.94E-76 dispersed
Cone15ag0309 Cone-Chr15:1431137 Cone9ag1074 Cone-Chr9:6041529 9.73E-108 transposed
Cone14ag1131 Cone-Chr14:9400025 Cone9ag1074 Cone-Chr9:6041529 6.98E-193 wgd
Cone15ag1151 Cone-Chr15:9327612 Cone9ag1074 Cone-Chr9:6041529 8.54E-194 wgd
Cone6ag0079 Cone-Chr6:387881 Cone9ag1074 Cone-Chr9:6041529 1.69E-191 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1074 K15283 - rcu:8284234 605.905