Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1086 ATGGAACAGTTGAAGTTAGCGCAAGAAACTAAAGAGAAAGAGGTTTATTCTTCCATGTGCACTCAGAAAAGCGACCACACAGTTGAATCCTCCTCGGGTAGTCCTCGACATAGAAAGGTTTCAGCTAGATGGGACCCATATGAAGCATGTAGGCCTATTGTCGATGAAGCTCCTGTATATTATCCCACTGTGGAGGAGTTTGAAGACACACTTGGTTACATAGCAAAGATTCGCATGGAAGCAGAACGGTATGGCATATGCCGGATTGTTCCTCCTCCCTCCTGGAATCCACCTTGCCCTCTTAGGACGAAAGATAAATGGGAAGATGCAAAGTTTCCTACTCGTATTCAGCAAGTTGATTTGCTGCAAAATAGGGAGCCCATGAGGAAGAAGAACAGGGGGCGAAAAAGGAAACGTAGGAAGCACTCCAGAATGAGAACAATGGGAACAAGGAGGCCCATGAATCCTGGCTTAGAGGCGAATACTGCTTCCGAGGCTGAAGAAAAATTCGGCTTCAATTCTGGATCAGACTTCAATTTTCGAGATTTTCAGAGTTATGCTGACTATTTCAAGGAGAGTTACTTTGGAATGAAGGAAGCTAAGGACTTAGAATGTGGTGAAATTGAGGTCAATAATAAATGGGTGCCATCTGAGGAGGATATTGAAGGTGAATACTGGCGTATAATTGAGAAACCAACTGATGAAGTTGAGGTATACTACGGAGCTGACTTGGAATCAGGGACATTTGGAAGCGGATTTCCCAAGGCATCATTTGTGTTAAATGAAAGTGATTCCGATGAATATTTGAAGTCAGGTTGGAACCTTAATAACTTCCCACACCTACCGGGTTCCGTATTGTGTTTCGAGGAAAGCGATATCTCTGGAGTGGTAGTGCCATGGCTCTATGTTGGAATGTGCTTCTCGTCATTTTGTTGGCATGTTGAGGACCACCATCTTTACTCTCTAAACTATTTGCACTGGGGCGATCCAAAAGTATGGTACGGAGTTCCTGGAAGCCATGCTTATTCTCTAGAAGCTGCAATGAAAAAGCATTTGCCCAATTTGTTTGAAGAACAGCCCCATTTACTTCATGAACTGGTTACTCAGTTATCTCCTTCGGTTCTCAAATCCGAAGGAGTACCAGTTTATCGAGCAGTCCAGTATTCCCGGGAATTTGTTCTGACGTTCCCAAGGGCATACCACTCTGGATTTAATTGTGGTTTCAACTGCGCTGAGGCTGTCAATGTGGCTCCCGTTGATTGGTTGGTTCATGGCCAAAATGCAGTAGAGATTTACAGCGAGCAGTGTCGCAAGACGTCAATTGCCCATGACAAATTATTATTCGGTGCAGCTAAGGAAGCCATAAAGGCCTTGTGGGAGATCTCAAGTCTTGGAAAGGAAACTCCGAGAAATTTGAGATGGAGAAGTGTTTGTGGGAAAGATGGAGACCTTACCAAGGCAGTTCAGACAAGGCGAAGGATGGAGAAGGAAAGGATGGATTTCCTCCCAGCCGGTTGTAAGATACTGAAGATGGAGAGGGATTTTGATTGTGAAAGCGAGAGAGAATGTTGTTCATGCTTTTATGATTTGCATGTATCTGCGGCCACCTGCAAGTGTTCTCCTGACCGGTTTTCATGCCTTAAGCATACACATAACCTCTGCCCATGTGCATTTGAATACAAAACTGTTCTACTCCGTTATACTCTAAATGAATTGAACACTCTGGTTGAAGCATTGGAAGGGGGATTAGACGCCCTTAGACTATGGGCTTTGGAAGACTGTCAATTTATTCCTTCTAAGCAGGATTTTGAGAGCAATATTTGCAAGTCAAATTCCAATGATGTAGAGGAAAAACCTTCCATTTTGCCAGAAACAAAAGAGAAGCCCAAAATAGAGACCCCTTGCAGTTCAGGTAGTAGCGTTTCTTCTGAAGTTTTCCATTCAGAGGCGCAACATGGATTGCTTGGCCTTGGTGACTCTGTAAAAGGCGATATGGTCATGACGAAAGAAGAAAATGTGGGGCAGAAGTTATATATAGATTTGAATATTAATGTCATTTCGGATGAACATGAGAATGGATGGCTGTCTATGTCAGATAGTATGCCTATCACAAATTTGGAAAAACAGAATCTGTCTTCTAAATCAGACGGTGATGAGTTGTTGAGAATTAATCTCGCCTTTCCACATCTACCATCATCTATTTTGCCACTAAGCAGTTTGGAAACCTCAGATATGAGTACTTATTTGGTAGATCCTTTGGTTGAGGCTATAAATTTTGGATCTGTCATGTTCGGAAAGCTTTGGTGCAATAAGCGGACAATATTTCCAAAAGGATATAGAAGCAGAACTAAGTTTATTAGTGTGATGGATCCCACCAATGTGTGTACTTATATATCAGAAGTTCTTGATGCCGGCTTGCTTGGGCCTCTATTTAAGGTTAGTTTGGAGGAATTTCCAAGTGAAAGTTTTGCAAGTGTCTCAGCAGATAAGTGCTGGGATATGGTGCTTCAGAGAATAAACCAGGAAATCCTACGACACAATAGTCAAAGAAAAGAAGTCCCTCCGTTGCAGCCTCTGCAAGAAGTCAATGGACTTCAAATGTTTGGGTTTCTCTCCCCACATGTCACTCAGGTTATCGAGACTCTTGACCCCGAGCATCAATGTGTTGAGTATTGGAACCATAAGCCTCATTCTCGTGTAAAAGAGAATGATCTCAAAAGCTCTTGTTTAGGATCGATTACTTGTTTGGAAGTAACAAGTGCAAAAATTTTTGGCTTCAGTCTGATGAGGAAGGAGGACCATGCCAATCCCTCTATCCACAAACTGCACTGCAGCAATTCACCGAATTGA 2850 42.77 MEQLKLAQETKEKEVYSSMCTQKSDHTVESSSGSPRHRKVSARWDPYEACRPIVDEAPVYYPTVEEFEDTLGYIAKIRMEAERYGICRIVPPPSWNPPCPLRTKDKWEDAKFPTRIQQVDLLQNREPMRKKNRGRKRKRRKHSRMRTMGTRRPMNPGLEANTASEAEEKFGFNSGSDFNFRDFQSYADYFKESYFGMKEAKDLECGEIEVNNKWVPSEEDIEGEYWRIIEKPTDEVEVYYGADLESGTFGSGFPKASFVLNESDSDEYLKSGWNLNNFPHLPGSVLCFEESDISGVVVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGSHAYSLEAAMKKHLPNLFEEQPHLLHELVTQLSPSVLKSEGVPVYRAVQYSREFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLVHGQNAVEIYSEQCRKTSIAHDKLLFGAAKEAIKALWEISSLGKETPRNLRWRSVCGKDGDLTKAVQTRRRMEKERMDFLPAGCKILKMERDFDCESERECCSCFYDLHVSAATCKCSPDRFSCLKHTHNLCPCAFEYKTVLLRYTLNELNTLVEALEGGLDALRLWALEDCQFIPSKQDFESNICKSNSNDVEEKPSILPETKEKPKIETPCSSGSSVSSEVFHSEAQHGLLGLGDSVKGDMVMTKEENVGQKLYIDLNINVISDEHENGWLSMSDSMPITNLEKQNLSSKSDGDELLRINLAFPHLPSSILPLSSLETSDMSTYLVDPLVEAINFGSVMFGKLWCNKRTIFPKGYRSRTKFISVMDPTNVCTYISEVLDAGLLGPLFKVSLEEFPSESFASVSADKCWDMVLQRINQEILRHNSQRKEVPPLQPLQEVNGLQMFGFLSPHVTQVIETLDPEHQCVEYWNHKPHSRVKENDLKSSCLGSITCLEVTSAKIFGFSLMRKEDHANPSIHKLHCSNSPN 949
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6282421 6287632 - Conep09aG0111700.1 Cone9ag1086 445249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1086 949 ProSiteProfiles JmjN domain profile. 57 98 IPR003349 -
Cone9ag1086 949 SMART JmjN_1 56 97 IPR003349 -
Cone9ag1086 949 PANTHER LYSINE-SPECIFIC DEMETHYLASE 39 662 - GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)|GO:0034647(PANTHER)
Cone9ag1086 949 SUPERFAMILY Clavaminate synthase-like 233 460 - -
Cone9ag1086 949 Gene3D Cupin 42 417 - -
Cone9ag1086 949 ProSiteProfiles FYR domain FYRN motif profile. 746 804 IPR003888 GO:0005634(InterPro)
Cone9ag1086 949 ProSiteProfiles JmjC domain profile. 267 433 IPR003347 -
Cone9ag1086 949 Pfam JmjC domain, hydroxylase 300 416 IPR003347 -
Cone9ag1086 949 MobiDBLite consensus disorder prediction 129 148 - -
Cone9ag1086 949 Pfam F/Y-rich N-terminus 757 803 IPR003888 GO:0005634(InterPro)
Cone9ag1086 949 Pfam F/Y rich C-terminus 808 894 IPR003889 GO:0005634(InterPro)
Cone9ag1086 949 Pfam C5HC2 zinc finger 523 575 IPR004198 -
Cone9ag1086 949 MobiDBLite consensus disorder prediction 1 19 - -
Cone9ag1086 949 Pfam jmjN domain 58 91 IPR003349 -
Cone9ag1086 949 Gene3D - 753 889 - -
Cone9ag1086 949 SMART fyrc_3 810 903 IPR003889 GO:0005634(InterPro)
Cone9ag1086 949 MobiDBLite consensus disorder prediction 125 158 - -
Cone9ag1086 949 MobiDBLite consensus disorder prediction 614 634 - -
Cone9ag1086 949 SMART fyrn_3 760 804 IPR003888 GO:0005634(InterPro)
Cone9ag1086 949 FunFam Putative lysine-specific demethylase JMJ16 752 889 - -
Cone9ag1086 949 ProSiteProfiles FYR domain FYRC motif profile. 806 895 IPR003889 GO:0005634(InterPro)
Cone9ag1086 949 SMART cupin_9 267 433 IPR003347 -
Cone9ag1086 949 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1120 Cone-Chr6:7877660 Cone9ag1086 Cone-Chr9:6282421 0 dispersed
Cone8ag0309 Cone-Chr8:1785361 Cone9ag1086 Cone-Chr9:6282421 3.82E-91 dispersed
Cone8ag0485 Cone-Chr8:3343402 Cone9ag1086 Cone-Chr9:6282421 1.38E-44 dispersed
Cone9ag1086 Cone-Chr9:6282421 Cone3ag0673 Cone-Chr3:3426695 9.43E-268 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46863 PF04525 LOR 3.60E-48 CL0395 Cone TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1086 K11446 - vvi:100252938 1095.49