Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1086 ATGGAACAGTTGAAGTTAGCGCAAGAAACTAAAGAGAAAGAGGTTTATTCTTCCATGTGCACTCAGAAAAGCGACCACACAGTTGAATCCTCCTCGGGTAGTCCTCGACATAGAAAGGTTTCAGCTAGATGGGACCCATATGAAGCATGTAGGCCTATTGTCGATGAAGCTCCTGTATATTATCCCACTGTGGAGGAGTTTGAAGACACACTTGGTTACATAGCAAAGATTCGCATGGAAGCAGAACGGTATGGCATATGCCGGATTGTTCCTCCTCCCTCCTGGAATCCACCTTGCCCTCTTAGGACGAAAGATAAATGGGAAGATGCAAAGTTTCCTACTCGTATTCAGCAAGTTGATTTGCTGCAAAATAGGGAGCCCATGAGGAAGAAGAACAGGGGGCGAAAAAGGAAACGTAGGAAGCACTCCAGAATGAGAACAATGGGAACAAGGAGGCCCATGAATCCTGGCTTAGAGGCGAATACTGCTTCCGAGGCTGAAGAAAAATTCGGCTTCAATTCTGGATCAGACTTCAATTTTCGAGATTTTCAGAGTTATGCTGACTATTTCAAGGAGAGTTACTTTGGAATGAAGGAAGCTAAGGACTTAGAATGTGGTGAAATTGAGGTCAATAATAAATGGGTGCCATCTGAGGAGGATATTGAAGGTGAATACTGGCGTATAATTGAGAAACCAACTGATGAAGTTGAGGTATACTACGGAGCTGACTTGGAATCAGGGACATTTGGAAGCGGATTTCCCAAGGCATCATTTGTGTTAAATGAAAGTGATTCCGATGAATATTTGAAGTCAGGTTGGAACCTTAATAACTTCCCACACCTACCGGGTTCCGTATTGTGTTTCGAGGAAAGCGATATCTCTGGAGTGGTAGTGCCATGGCTCTATGTTGGAATGTGCTTCTCGTCATTTTGTTGGCATGTTGAGGACCACCATCTTTACTCTCTAAACTATTTGCACTGGGGCGATCCAAAAGTATGGTACGGAGTTCCTGGAAGCCATGCTTATTCTCTAGAAGCTGCAATGAAAAAGCATTTGCCCAATTTGTTTGAAGAACAGCCCCATTTACTTCATGAACTGGTTACTCAGTTATCTCCTTCGGTTCTCAAATCCGAAGGAGTACCAGTTTATCGAGCAGTCCAGTATTCCCGGGAATTTGTTCTGACGTTCCCAAGGGCATACCACTCTGGATTTAATTGTGGTTTCAACTGCGCTGAGGCTGTCAATGTGGCTCCCGTTGATTGGTTGGTTCATGGCCAAAATGCAGTAGAGATTTACAGCGAGCAGTGTCGCAAGACGTCAATTGCCCATGACAAATTATTATTCGGTGCAGCTAAGGAAGCCATAAAGGCCTTGTGGGAGATCTCAAGTCTTGGAAAGGAAACTCCGAGAAATTTGAGATGGAGAAGTGTTTGTGGGAAAGATGGAGACCTTACCAAGGCAGTTCAGACAAGGCGAAGGATGGAGAAGGAAAGGATGGATTTCCTCCCAGCCGGTTGTAAGATACTGAAGATGGAGAGGGATTTTGATTGTGAAAGCGAGAGAGAATGTTGTTCATGCTTTTATGATTTGCATGTATCTGCGGCCACCTGCAAGTGTTCTCCTGACCGGTTTTCATGCCTTAAGCATACACATAACCTCTGCCCATGTGCATTTGAATACAAAACTGTTCTACTCCGTTATACTCTAAATGAATTGAACACTCTGGTTGAAGCATTGGAAGGGGGATTAGACGCCCTTAGACTATGGGCTTTGGAAGACTGTCAATTTATTCCTTCTAAGCAGGATTTTGAGAGCAATATTTGCAAGTCAAATTCCAATGATGTAGAGGAAAAACCTTCCATTTTGCCAGAAACAAAAGAGAAGCCCAAAATAGAGACCCCTTGCAGTTCAGGTAGTAGCGTTTCTTCTGAAGTTTTCCATTCAGAGGCGCAACATGGATTGCTTGGCCTTGGTGACTCTGTAAAAGGCGATATGGTCATGACGAAAGAAGAAAATGTGGGGCAGAAGTTATATATAGATTTGAATATTAATGTCATTTCGGATGAACATGAGAATGGATGGCTGTCTATGTCAGATAGTATGCCTATCACAAATTTGGAAAAACAGAATCTGTCTTCTAAATCAGACGGTGATGAGTTGTTGAGAATTAATCTCGCCTTTCCACATCTACCATCATCTATTTTGCCACTAAGCAGTTTGGAAACCTCAGATATGAGTACTTATTTGGTAGATCCTTTGGTTGAGGCTATAAATTTTGGATCTGTCATGTTCGGAAAGCTTTGGTGCAATAAGCGGACAATATTTCCAAAAGGATATAGAAGCAGAACTAAGTTTATTAGTGTGATGGATCCCACCAATGTGTGTACTTATATATCAGAAGTTCTTGATGCCGGCTTGCTTGGGCCTCTATTTAAGGTTAGTTTGGAGGAATTTCCAAGTGAAAGTTTTGCAAGTGTCTCAGCAGATAAGTGCTGGGATATGGTGCTTCAGAGAATAAACCAGGAAATCCTACGACACAATAGTCAAAGAAAAGAAGTCCCTCCGTTGCAGCCTCTGCAAGAAGTCAATGGACTTCAAATGTTTGGGTTTCTCTCCCCACATGTCACTCAGGTTATCGAGACTCTTGACCCCGAGCATCAATGTGTTGAGTATTGGAACCATAAGCCTCATTCTCGTGTAAAAGAGAATGATCTCAAAAGCTCTTGTTTAGGATCGATTACTTGTTTGGAAGTAACAAGTGCAAAAATTTTTGGCTTCAGTCTGATGAGGAAGGAGGACCATGCCAATCCCTCTATCCACAAACTGCACTGCAGCAATTCACCGAATTGA 2850 42.77 MEQLKLAQETKEKEVYSSMCTQKSDHTVESSSGSPRHRKVSARWDPYEACRPIVDEAPVYYPTVEEFEDTLGYIAKIRMEAERYGICRIVPPPSWNPPCPLRTKDKWEDAKFPTRIQQVDLLQNREPMRKKNRGRKRKRRKHSRMRTMGTRRPMNPGLEANTASEAEEKFGFNSGSDFNFRDFQSYADYFKESYFGMKEAKDLECGEIEVNNKWVPSEEDIEGEYWRIIEKPTDEVEVYYGADLESGTFGSGFPKASFVLNESDSDEYLKSGWNLNNFPHLPGSVLCFEESDISGVVVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGSHAYSLEAAMKKHLPNLFEEQPHLLHELVTQLSPSVLKSEGVPVYRAVQYSREFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLVHGQNAVEIYSEQCRKTSIAHDKLLFGAAKEAIKALWEISSLGKETPRNLRWRSVCGKDGDLTKAVQTRRRMEKERMDFLPAGCKILKMERDFDCESERECCSCFYDLHVSAATCKCSPDRFSCLKHTHNLCPCAFEYKTVLLRYTLNELNTLVEALEGGLDALRLWALEDCQFIPSKQDFESNICKSNSNDVEEKPSILPETKEKPKIETPCSSGSSVSSEVFHSEAQHGLLGLGDSVKGDMVMTKEENVGQKLYIDLNINVISDEHENGWLSMSDSMPITNLEKQNLSSKSDGDELLRINLAFPHLPSSILPLSSLETSDMSTYLVDPLVEAINFGSVMFGKLWCNKRTIFPKGYRSRTKFISVMDPTNVCTYISEVLDAGLLGPLFKVSLEEFPSESFASVSADKCWDMVLQRINQEILRHNSQRKEVPPLQPLQEVNGLQMFGFLSPHVTQVIETLDPEHQCVEYWNHKPHSRVKENDLKSSCLGSITCLEVTSAKIFGFSLMRKEDHANPSIHKLHCSNSPN 949
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 6282421 6287632 - Conep09aG0111700.1 Cone9ag1086 445249

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1086 949 ProSiteProfiles JmjN domain profile. 57 98 IPR003349 -
Cone9ag1086 949 SMART JmjN_1 56 97 IPR003349 -
Cone9ag1086 949 PANTHER LYSINE-SPECIFIC DEMETHYLASE 39 662 - GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)|GO:0034647(PANTHER)
Cone9ag1086 949 SUPERFAMILY Clavaminate synthase-like 233 460 - -
Cone9ag1086 949 Gene3D Cupin 42 417 - -
Cone9ag1086 949 ProSiteProfiles FYR domain FYRN motif profile. 746 804 IPR003888 GO:0005634(InterPro)
Cone9ag1086 949 ProSiteProfiles JmjC domain profile. 267 433 IPR003347 -
Cone9ag1086 949 Pfam JmjC domain, hydroxylase 300 416 IPR003347 -
Cone9ag1086 949 MobiDBLite consensus disorder prediction 129 148 - -
Cone9ag1086 949 Pfam F/Y-rich N-terminus 757 803 IPR003888 GO:0005634(InterPro)
Cone9ag1086 949 Pfam F/Y rich C-terminus 808 894 IPR003889 GO:0005634(InterPro)
Cone9ag1086 949 Pfam C5HC2 zinc finger 523 575 IPR004198 -
Cone9ag1086 949 MobiDBLite consensus disorder prediction 1 19 - -
Cone9ag1086 949 Pfam jmjN domain 58 91 IPR003349 -
Cone9ag1086 949 Gene3D - 753 889 - -
Cone9ag1086 949 SMART fyrc_3 810 903 IPR003889 GO:0005634(InterPro)
Cone9ag1086 949 MobiDBLite consensus disorder prediction 125 158 - -
Cone9ag1086 949 MobiDBLite consensus disorder prediction 614 634 - -
Cone9ag1086 949 SMART fyrn_3 760 804 IPR003888 GO:0005634(InterPro)
Cone9ag1086 949 FunFam Putative lysine-specific demethylase JMJ16 752 889 - -
Cone9ag1086 949 ProSiteProfiles FYR domain FYRC motif profile. 806 895 IPR003889 GO:0005634(InterPro)
Cone9ag1086 949 SMART cupin_9 267 433 IPR003347 -
Cone9ag1086 949 MobiDBLite consensus disorder prediction 1 40 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1086 K11446 - - vvi:100252938 1095.49
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1120 Cone-Chr6:7877660 Cone9ag1086 Cone-Chr9:6282421 0 dispersed
Cone8ag0309 Cone-Chr8:1785361 Cone9ag1086 Cone-Chr9:6282421 3.82E-91 dispersed
Cone8ag0485 Cone-Chr8:3343402 Cone9ag1086 Cone-Chr9:6282421 1.38E-44 dispersed
Cone9ag1086 Cone-Chr9:6282421 Cone3ag0673 Cone-Chr3:3426695 9.43E-268 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone3ag0673 . 1 1213 JUMONJI Transcription Factor Family AT1G08620 54.5 0.0e+00 1268.1
Cone10ag0643 . 1 1215 JUMONJI Transcription Factor Family AT1G08620 54.3 0.0e+00 1258.4
Cone9ag1086 . 27 929 JUMONJI Transcription Factor Family AT1G30810 52.6 6.3e-257 884.4
Cone6ag1120 . 32 924 JUMONJI Transcription Factor Family AT1G30810 52.5 5.9e-255 877.9
Cone6ag1120 . 63 892 JUMONJI Transcription Factor Family AT4G20400 52.8 1.1e-249 860.5
Cone9ag1086 . 65 895 JUMONJI Transcription Factor Family AT4G20400 52.6 5.8e-248 854.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003199 1 6 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 5 1 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46863 PF04525 LOR 3.60E-48 CL0395 Cone TR