Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1106 ATGGCTATCTCTCCATTAGCTAGTTCCCTATTGCTTTTATGTTTTCTAGCATTCATTATTTTACCATTTCAAGCATCTGGTTCCGATGGATATTGGTATCCCCCCACCACCCGATCACCCAGCACCAAGGTAACCATGAACGTGATAGACTCTTGCTGGCGTAGAAGGGCTAATTGGGCAAGCAATCGTCGTGCATTAGCTAACTGTGCAGTAGGCTATGGCAAAGACGCAATTGGTGGCAAATTCGGTGCGACGTACGTAGTAACAGACGCATCTGATGATCCAGTACACCCTAAACCAGGAACACTACGTTACGGTGTTACCCAATTGAGGCCTCTATGGATCGTTTTTGCTAAAAGCATGACTATTGTTTTGAAAAACGAGTTGATTATGACCAGTTTTAAGACCATAGATGGAAGAGGAGCTAAAGTGGAGATTGCATATGGGCCTTGCATAACTGTGCAACATATTAGCCATGTTATAATACATGGTATTAGTATTCATGACTGTAAGCCGGGAAAATCTGGGGATGTTATGAGTAGTGTTGCGCATATCGGACACCGTCGTGGATCCGACGGTGACGCCATTTCTATATTTGATTCGTCATATGTTTGGATCGATCATTGCTTTCTGGCTAAATCCGCTGATGGTCTTATTGATATCATCCATGCCTCTACGGCAGTCACTGTCTCCAATAACTTATTCTCTCAACATGACAAAGTGATGTTGCTCGGACATGATGACAGTTTTGTAGCCGATAAGATCATGAGGGTCACGATTGTGTTCAACCGCTTCAGTAATGGCCTCGTCCAAAGAATGCCAAGGGTGAGGTTTGGATATGCCCATGTTGCGAATAACCGATATGAACAATGGTTGATGTATGCCGTTGGAGGGAGCGCTAATCCAACAATATTTAGTGAAGCAAACTACTTTTATGCTCCGAAAGATCCCGAGGCAAAGCAGGTAACGAAGAGAGAGGTCAAATCTAGCAGTTGGAAGAGCTGGAAATGGAGGTCATCAAGAGATGTGTTTCAGAATGGAGCTTATTTTGTGCAATCTGGATGGGGAAGTTGTTATCCATATTACACTAAGGCTCAGTGGTTTCCTGTTGCTTCTGGATTTTCTGTTCCCGCCTTAACTGCCAATGCGGGTCCTTTGAATTGTGTTGTCGGTAAACCATGCTAG 1185 43.97 MAISPLASSLLLLCFLAFIILPFQASGSDGYWYPPTTRSPSTKVTMNVIDSCWRRRANWASNRRALANCAVGYGKDAIGGKFGATYVVTDASDDPVHPKPGTLRYGVTQLRPLWIVFAKSMTIVLKNELIMTSFKTIDGRGAKVEIAYGPCITVQHISHVIIHGISIHDCKPGKSGDVMSSVAHIGHRRGSDGDAISIFDSSYVWIDHCFLAKSADGLIDIIHASTAVTVSNNLFSQHDKVMLLGHDDSFVADKIMRVTIVFNRFSNGLVQRMPRVRFGYAHVANNRYEQWLMYAVGGSANPTIFSEANYFYAPKDPEAKQVTKREVKSSSWKSWKWRSSRDVFQNGAYFVQSGWGSCYPYYTKAQWFPVASGFSVPALTANAGPLNCVVGKPC 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7088960 7090568 + Conep09aG0113800.1 Cone9ag1106 445269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1106 394 SMART amb_all 120 317 IPR002022 -
Cone9ag1106 394 PANTHER PECTATE LYASE 18-RELATED 39 391 IPR045032 GO:0030570(InterPro)
Cone9ag1106 394 Pfam Pectate lyase 132 311 IPR002022 -
Cone9ag1106 394 SUPERFAMILY Pectin lyase-like 46 385 IPR011050 -
Cone9ag1106 394 Gene3D - 46 387 IPR012334 -
Cone9ag1106 394 PRINTS Pollen allergen Amb family signature 192 213 IPR018082 -
Cone9ag1106 394 PRINTS Pollen allergen Amb family signature 92 117 IPR018082 -
Cone9ag1106 394 PRINTS Pollen allergen Amb family signature 128 144 IPR018082 -
Cone9ag1106 394 PRINTS Pollen allergen Amb family signature 69 86 IPR018082 -
Cone9ag1106 394 PRINTS Pollen allergen Amb family signature 335 359 IPR018082 -
Cone9ag1106 394 PRINTS Pollen allergen Amb family signature 272 291 IPR018082 -
Cone9ag1106 394 PRINTS Pollen allergen Amb family signature 365 388 IPR018082 -
Cone9ag1106 394 PRINTS Pollen allergen Amb family signature 294 313 IPR018082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag0841 Cone-Chr8:8427211 Cone9ag1106 Cone-Chr9:7088960 3.10E-100 dispersed
Cone9ag1106 Cone-Chr9:7088960 Cone8ag0710 Cone-Chr8:7123264 2.96E-144 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1106 K01728 - vvi:100245293 563.148