Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone9ag1106 | ATGGCTATCTCTCCATTAGCTAGTTCCCTATTGCTTTTATGTTTTCTAGCATTCATTATTTTACCATTTCAAGCATCTGGTTCCGATGGATATTGGTATCCCCCCACCACCCGATCACCCAGCACCAAGGTAACCATGAACGTGATAGACTCTTGCTGGCGTAGAAGGGCTAATTGGGCAAGCAATCGTCGTGCATTAGCTAACTGTGCAGTAGGCTATGGCAAAGACGCAATTGGTGGCAAATTCGGTGCGACGTACGTAGTAACAGACGCATCTGATGATCCAGTACACCCTAAACCAGGAACACTACGTTACGGTGTTACCCAATTGAGGCCTCTATGGATCGTTTTTGCTAAAAGCATGACTATTGTTTTGAAAAACGAGTTGATTATGACCAGTTTTAAGACCATAGATGGAAGAGGAGCTAAAGTGGAGATTGCATATGGGCCTTGCATAACTGTGCAACATATTAGCCATGTTATAATACATGGTATTAGTATTCATGACTGTAAGCCGGGAAAATCTGGGGATGTTATGAGTAGTGTTGCGCATATCGGACACCGTCGTGGATCCGACGGTGACGCCATTTCTATATTTGATTCGTCATATGTTTGGATCGATCATTGCTTTCTGGCTAAATCCGCTGATGGTCTTATTGATATCATCCATGCCTCTACGGCAGTCACTGTCTCCAATAACTTATTCTCTCAACATGACAAAGTGATGTTGCTCGGACATGATGACAGTTTTGTAGCCGATAAGATCATGAGGGTCACGATTGTGTTCAACCGCTTCAGTAATGGCCTCGTCCAAAGAATGCCAAGGGTGAGGTTTGGATATGCCCATGTTGCGAATAACCGATATGAACAATGGTTGATGTATGCCGTTGGAGGGAGCGCTAATCCAACAATATTTAGTGAAGCAAACTACTTTTATGCTCCGAAAGATCCCGAGGCAAAGCAGGTAACGAAGAGAGAGGTCAAATCTAGCAGTTGGAAGAGCTGGAAATGGAGGTCATCAAGAGATGTGTTTCAGAATGGAGCTTATTTTGTGCAATCTGGATGGGGAAGTTGTTATCCATATTACACTAAGGCTCAGTGGTTTCCTGTTGCTTCTGGATTTTCTGTTCCCGCCTTAACTGCCAATGCGGGTCCTTTGAATTGTGTTGTCGGTAAACCATGCTAG | 1185 | 43.97 | MAISPLASSLLLLCFLAFIILPFQASGSDGYWYPPTTRSPSTKVTMNVIDSCWRRRANWASNRRALANCAVGYGKDAIGGKFGATYVVTDASDDPVHPKPGTLRYGVTQLRPLWIVFAKSMTIVLKNELIMTSFKTIDGRGAKVEIAYGPCITVQHISHVIIHGISIHDCKPGKSGDVMSSVAHIGHRRGSDGDAISIFDSSYVWIDHCFLAKSADGLIDIIHASTAVTVSNNLFSQHDKVMLLGHDDSFVADKIMRVTIVFNRFSNGLVQRMPRVRFGYAHVANNRYEQWLMYAVGGSANPTIFSEANYFYAPKDPEAKQVTKREVKSSSWKSWKWRSSRDVFQNGAYFVQSGWGSCYPYYTKAQWFPVASGFSVPALTANAGPLNCVVGKPC | 394 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 7088960 | 7090568 | + | Conep09aG0113800.1 | Cone9ag1106 | 445269 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone9ag1106 | 394 | SMART | amb_all | 120 | 317 | IPR002022 | - | |
Cone9ag1106 | 394 | PANTHER | PECTATE LYASE 18-RELATED | 39 | 391 | IPR045032 | GO:0030570(InterPro) | |
Cone9ag1106 | 394 | Pfam | Pectate lyase | 132 | 311 | IPR002022 | - | |
Cone9ag1106 | 394 | SUPERFAMILY | Pectin lyase-like | 46 | 385 | IPR011050 | - | |
Cone9ag1106 | 394 | Gene3D | - | 46 | 387 | IPR012334 | - | |
Cone9ag1106 | 394 | PRINTS | Pollen allergen Amb family signature | 192 | 213 | IPR018082 | - | |
Cone9ag1106 | 394 | PRINTS | Pollen allergen Amb family signature | 92 | 117 | IPR018082 | - | |
Cone9ag1106 | 394 | PRINTS | Pollen allergen Amb family signature | 128 | 144 | IPR018082 | - | |
Cone9ag1106 | 394 | PRINTS | Pollen allergen Amb family signature | 69 | 86 | IPR018082 | - | |
Cone9ag1106 | 394 | PRINTS | Pollen allergen Amb family signature | 335 | 359 | IPR018082 | - | |
Cone9ag1106 | 394 | PRINTS | Pollen allergen Amb family signature | 272 | 291 | IPR018082 | - | |
Cone9ag1106 | 394 | PRINTS | Pollen allergen Amb family signature | 365 | 388 | IPR018082 | - | |
Cone9ag1106 | 394 | PRINTS | Pollen allergen Amb family signature | 294 | 313 | IPR018082 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone8ag0841 | Cone-Chr8:8427211 | Cone9ag1106 | Cone-Chr9:7088960 | 3.10E-100 | dispersed | |
Cone9ag1106 | Cone-Chr9:7088960 | Cone8ag0710 | Cone-Chr8:7123264 | 2.96E-144 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone9ag1106 | K01728 | - | vvi:100245293 | 563.148 |