Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1121 ATGAATTCTCATTCACACGCCCCATGCGCTGCATGCAAGTTCCTACGGCGAAAATGCACCCAAGAATGCGTATGTGCACCCTACTTCCCATCTGATCAGCCTAAAAAATTTGCCTTTGTTCATCAAGTTTACGGGGCTAGCAATGTCACAAAACTGCTAAAAGATCTGAGTCCGGCACAGAGAGAAGACGCCGCAAACTCCCTCGCTTATGAGGCAGAGGCCCGCATGCAGGACCCGGTTTATGGGTGCGTCAGTTTCATCTCGGTCCTTCAAACGAAACTGAGAGAGGTCCAAAGTGAACTCCTAAATGCCAAGAAAGTGCTTGCTACCTATATCGGGCCTGAAGCTATGCTCCCCATTTTACAACCCCAGTCAGGGTATGGCCCTCAACAACAACAAAATTTACAATATGGCCCTCATCATCCAATAGGTCATGATCACGTCTCCTCTTACTATGACATGATTGCCGGCACCGGCACCCTCACTAAAAGGATGCAAGGAGGAGCATTGGAGATCCGTGAGCCGCATCAGGCGCATCCCACTCAACTCTTGAAGCAACAAGTATTACTACAACAACCAGAACAAGAACAGCAGCAGATGCTTCAGGCCGCGGCCCAGCAATTCTCAGGGGGGATTGTAATAAGAGATCAGCCTCAAGAGATGTTTTTGAATTACGAGCAGAATAAGCCACCGCAACAACATAGTGTGATCCTGATGAGGTTTAACAATGGATCAAATGGATTAGTGACCAATCAAATGGGTGCTAGTTGTTCAGATAATAGTATTGCAAGCGGGTTCAATCAATTGGCTATGAATGTCAACAGTAATAATGCTAGTAATAATAATATTGGAGGTCCATTGTCCCCATCTTTGGGTCTGGCCGCATATGATCAAAACCCTAGGAATTACCGGCAAGTACTACTAGATAATCATCATAAACAATCGATTCATTATCAGCTGCAAGAGCACCTATTGCACCATGATCACGAATCAGCCCAAGCACATCATCGTGAGCACCGAATATTACTTGAACAACAAGAAGGAGAAGATGATAAAAGTGTTCATCCATAA 1071 45.38 MNSHSHAPCAACKFLRRKCTQECVCAPYFPSDQPKKFAFVHQVYGASNVTKLLKDLSPAQREDAANSLAYEAEARMQDPVYGCVSFISVLQTKLREVQSELLNAKKVLATYIGPEAMLPILQPQSGYGPQQQQNLQYGPHHPIGHDHVSSYYDMIAGTGTLTKRMQGGALEIREPHQAHPTQLLKQQVLLQQPEQEQQQMLQAAAQQFSGGIVIRDQPQEMFLNYEQNKPPQQHSVILMRFNNGSNGLVTNQMGASCSDNSIASGFNQLAMNVNSNNASNNNIGGPLSPSLGLAAYDQNPRNYRQVLLDNHHKQSIHYQLQEHLLHHDHESAQAHHREHRILLEQQEGEDDKSVHP 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7475993 7477063 - Conep09aG0115300.1 Cone9ag1121 445284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1121 356 Coils Coil 87 107 - -
Cone9ag1121 356 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Cone9ag1121 356 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Cone9ag1121 356 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 6 196 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag1559 Cone-Chr5:10842839 Cone9ag1121 Cone-Chr9:7475993 1.21E-63 dispersed
Cone6ag1377 Cone-Chr6:11057520 Cone9ag1121 Cone-Chr9:7475993 2.30E-51 dispersed
Cone9ag1121 Cone-Chr9:7475993 Cone9ag1307 Cone-Chr9:9810044 7.29E-50 dispersed
Cone6ag1133 Cone-Chr6:8260428 Cone9ag1121 Cone-Chr9:7475993 3.10E-153 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46866 PF00759 Glyco_hydro_9 6.00E-121 CL0059 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1121 - - - 0.0