Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1129 ATGACATCTTCTGCGAATGATCATTCTGATAGTAGTGAAGCTGAAGAGCAGCAAAAGTATGGTGAGTCCCAGATTCCTTCTTCTACATCAATATCTGCAGTGTCTCAGCCTGGCACTTCAACGCCAATTCCATATCCAGCCCCTCCACATGTTGGAGCGGGACATTCTCTGGCACCAACAGCTTATCCTTACCCGGATCCTTACTATAGAAGCATATTTGCTCCCTATGACGCTCAACCCTATCCTCCACAGCCCTATGGTGGACAACCTATGGTCCATCTGCAATTAATGGGAATTCAACAAGCTGGAGTTCCTTTGCCATCAGATGCAATTGAGGGGCCCGTTTTTGTGAATGCTAAGCAATATCATGGAATCTTGCGGCGTAGACAATCTCGTGCCAAAGCTGAATCTGAAAATAAAGCTGTTAAGTCTAGGAAGCCATACTTGCACGAATCTAGGCATTTACATGCACTGAGAAGAGCTAGAGGATGTGGTGGCCGGTTTCTCAATGCAAAGAAAAATGAGAACCAACACAATGACATGGCGTCAGGTGAAAAATCACAACCTAATGTAAATCTCAATTCCTGTAAAACAGGTCTTGCTTCCTTGGATAGTGGTGAATGA 624 44.71 MTSSANDHSDSSEAEEQQKYGESQIPSSTSISAVSQPGTSTPIPYPAPPHVGAGHSLAPTAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPSDAIEGPVFVNAKQYHGILRRRQSRAKAESENKAVKSRKPYLHESRHLHALRRARGCGGRFLNAKKNENQHNDMASGEKSQPNVNLNSCKTGLASLDSGE 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7752033 7756745 - Conep09aG0116100.1 Cone9ag1129 445292

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1129 207 ProSiteProfiles NF-YA/HAP2 family profile. 111 171 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag1129 207 SMART cbf3 110 171 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag1129 207 MobiDBLite consensus disorder prediction 175 202 - -
Cone9ag1129 207 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 114 168 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag1129 207 MobiDBLite consensus disorder prediction 1 49 - -
Cone9ag1129 207 MobiDBLite consensus disorder prediction 18 40 - -
Cone9ag1129 207 MobiDBLite consensus disorder prediction 170 207 - -
Cone9ag1129 207 PRINTS CCAAT-binding transcription factor subunit B signature 114 136 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag1129 207 PRINTS CCAAT-binding transcription factor subunit B signature 145 168 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag1129 207 ProSitePatterns NF-YA/HAP2 subunit signature. 116 136 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Cone9ag1129 207 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 7 189 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cone9ag1129 207 Gene3D - 111 172 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1129 K08064 - - csv:101205549 301.597
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0122 Cone-Chr10:625299 Cone9ag1129 Cone-Chr9:7752033 1.29E-25 dispersed
Cone13ag0477 Cone-Chr13:5199740 Cone9ag1129 Cone-Chr9:7752033 4.31E-28 dispersed
Cone19ag0434 Cone-Chr19:3581597 Cone9ag1129 Cone-Chr9:7752033 4.16E-29 dispersed
Cone3ag0135 Cone-Chr3:753481 Cone9ag1129 Cone-Chr9:7752033 6.55E-25 dispersed
Cone4ag0809 Cone-Chr4:5131540 Cone9ag1129 Cone-Chr9:7752033 2.63E-34 dispersed
Cone5ag1448 Cone-Chr5:9392913 Cone9ag1129 Cone-Chr9:7752033 1.04E-27 dispersed
Cone7ag0760 Cone-Chr7:4704469 Cone9ag1129 Cone-Chr9:7752033 1.46E-33 dispersed
Cone7ag1235 Cone-Chr7:9162527 Cone9ag1129 Cone-Chr9:7752033 1.57E-24 dispersed
Cone6ag1141 Cone-Chr6:8567072 Cone9ag1129 Cone-Chr9:7752033 7.16E-117 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g528 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1141 Cone9ag1129 . . . . Blo08g00259 . . . . . Bma07g00447 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone18ag0101 . 23 274 CCAAT-HAP2 Transcription Factor Family AT5G12840 54.3 1.2e-55 214.2
Cone11ag1494 . 1 280 CCAAT-HAP2 Transcription Factor Family AT5G12840 51.9 4.6e-55 212.2
Cone5ag1448 . 18 238 CCAAT-HAP2 Transcription Factor Family AT5G12840 51.6 7.9e-47 184.9
Cone11ag1494 . 60 344 CCAAT-HAP2 Transcription Factor Family AT3G20910 50.7 4.5e-51 199.1
Cone9ag1129 . 62 178 CCAAT-HAP2 Transcription Factor Family AT2G34720 64.5 1.5e-37 153.3
Cone6ag1141 . 62 178 CCAAT-HAP2 Transcription Factor Family AT2G34720 66.7 3.4e-37 152.1
Cone9ag1129 . 1 202 CCAAT-HAP2 Transcription Factor Family AT1G30500 54.9 4.5e-49 191.8
Cone6ag1141 . 1 202 CCAAT-HAP2 Transcription Factor Family AT1G30500 53.0 1.5e-47 186.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004501 2 1 2 2 2 1 2 1 1 1 1 2 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46868 PF00334 NDK 6.70E-53 No_clan Cone TF