Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1129 ATGACATCTTCTGCGAATGATCATTCTGATAGTAGTGAAGCTGAAGAGCAGCAAAAGTATGGTGAGTCCCAGATTCCTTCTTCTACATCAATATCTGCAGTGTCTCAGCCTGGCACTTCAACGCCAATTCCATATCCAGCCCCTCCACATGTTGGAGCGGGACATTCTCTGGCACCAACAGCTTATCCTTACCCGGATCCTTACTATAGAAGCATATTTGCTCCCTATGACGCTCAACCCTATCCTCCACAGCCCTATGGTGGACAACCTATGGTCCATCTGCAATTAATGGGAATTCAACAAGCTGGAGTTCCTTTGCCATCAGATGCAATTGAGGGGCCCGTTTTTGTGAATGCTAAGCAATATCATGGAATCTTGCGGCGTAGACAATCTCGTGCCAAAGCTGAATCTGAAAATAAAGCTGTTAAGTCTAGGAAGCCATACTTGCACGAATCTAGGCATTTACATGCACTGAGAAGAGCTAGAGGATGTGGTGGCCGGTTTCTCAATGCAAAGAAAAATGAGAACCAACACAATGACATGGCGTCAGGTGAAAAATCACAACCTAATGTAAATCTCAATTCCTGTAAAACAGGTCTTGCTTCCTTGGATAGTGGTGAATGA 624 44.71 MTSSANDHSDSSEAEEQQKYGESQIPSSTSISAVSQPGTSTPIPYPAPPHVGAGHSLAPTAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPSDAIEGPVFVNAKQYHGILRRRQSRAKAESENKAVKSRKPYLHESRHLHALRRARGCGGRFLNAKKNENQHNDMASGEKSQPNVNLNSCKTGLASLDSGE 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7752033 7756745 - Conep09aG0116100.1 Cone9ag1129 445292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1129 207 ProSiteProfiles NF-YA/HAP2 family profile. 111 171 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag1129 207 SMART cbf3 110 171 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag1129 207 MobiDBLite consensus disorder prediction 175 202 - -
Cone9ag1129 207 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 114 168 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag1129 207 MobiDBLite consensus disorder prediction 1 49 - -
Cone9ag1129 207 MobiDBLite consensus disorder prediction 18 40 - -
Cone9ag1129 207 MobiDBLite consensus disorder prediction 170 207 - -
Cone9ag1129 207 PRINTS CCAAT-binding transcription factor subunit B signature 114 136 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag1129 207 PRINTS CCAAT-binding transcription factor subunit B signature 145 168 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag1129 207 ProSitePatterns NF-YA/HAP2 subunit signature. 116 136 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Cone9ag1129 207 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 7 189 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cone9ag1129 207 Gene3D - 111 172 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0122 Cone-Chr10:625299 Cone9ag1129 Cone-Chr9:7752033 1.29E-25 dispersed
Cone13ag0477 Cone-Chr13:5199740 Cone9ag1129 Cone-Chr9:7752033 4.31E-28 dispersed
Cone19ag0434 Cone-Chr19:3581597 Cone9ag1129 Cone-Chr9:7752033 4.16E-29 dispersed
Cone3ag0135 Cone-Chr3:753481 Cone9ag1129 Cone-Chr9:7752033 6.55E-25 dispersed
Cone4ag0809 Cone-Chr4:5131540 Cone9ag1129 Cone-Chr9:7752033 2.63E-34 dispersed
Cone5ag1448 Cone-Chr5:9392913 Cone9ag1129 Cone-Chr9:7752033 1.04E-27 dispersed
Cone7ag0760 Cone-Chr7:4704469 Cone9ag1129 Cone-Chr9:7752033 1.46E-33 dispersed
Cone7ag1235 Cone-Chr7:9162527 Cone9ag1129 Cone-Chr9:7752033 1.57E-24 dispersed
Cone6ag1141 Cone-Chr6:8567072 Cone9ag1129 Cone-Chr9:7752033 7.16E-117 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46868 PF00334 NDK 6.70E-53 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1129 K08064 - csv:101205549 301.597