Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone9ag1129 | ATGACATCTTCTGCGAATGATCATTCTGATAGTAGTGAAGCTGAAGAGCAGCAAAAGTATGGTGAGTCCCAGATTCCTTCTTCTACATCAATATCTGCAGTGTCTCAGCCTGGCACTTCAACGCCAATTCCATATCCAGCCCCTCCACATGTTGGAGCGGGACATTCTCTGGCACCAACAGCTTATCCTTACCCGGATCCTTACTATAGAAGCATATTTGCTCCCTATGACGCTCAACCCTATCCTCCACAGCCCTATGGTGGACAACCTATGGTCCATCTGCAATTAATGGGAATTCAACAAGCTGGAGTTCCTTTGCCATCAGATGCAATTGAGGGGCCCGTTTTTGTGAATGCTAAGCAATATCATGGAATCTTGCGGCGTAGACAATCTCGTGCCAAAGCTGAATCTGAAAATAAAGCTGTTAAGTCTAGGAAGCCATACTTGCACGAATCTAGGCATTTACATGCACTGAGAAGAGCTAGAGGATGTGGTGGCCGGTTTCTCAATGCAAAGAAAAATGAGAACCAACACAATGACATGGCGTCAGGTGAAAAATCACAACCTAATGTAAATCTCAATTCCTGTAAAACAGGTCTTGCTTCCTTGGATAGTGGTGAATGA | 624 | 44.71 | MTSSANDHSDSSEAEEQQKYGESQIPSSTSISAVSQPGTSTPIPYPAPPHVGAGHSLAPTAYPYPDPYYRSIFAPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPSDAIEGPVFVNAKQYHGILRRRQSRAKAESENKAVKSRKPYLHESRHLHALRRARGCGGRFLNAKKNENQHNDMASGEKSQPNVNLNSCKTGLASLDSGE | 207 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 7752033 | 7756745 | - | Conep09aG0116100.1 | Cone9ag1129 | 445292 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone9ag1129 | 207 | ProSiteProfiles | NF-YA/HAP2 family profile. | 111 | 171 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone9ag1129 | 207 | SMART | cbf3 | 110 | 171 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone9ag1129 | 207 | MobiDBLite | consensus disorder prediction | 175 | 202 | - | - | |
Cone9ag1129 | 207 | Pfam | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | 114 | 168 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone9ag1129 | 207 | MobiDBLite | consensus disorder prediction | 1 | 49 | - | - | |
Cone9ag1129 | 207 | MobiDBLite | consensus disorder prediction | 18 | 40 | - | - | |
Cone9ag1129 | 207 | MobiDBLite | consensus disorder prediction | 170 | 207 | - | - | |
Cone9ag1129 | 207 | PRINTS | CCAAT-binding transcription factor subunit B signature | 114 | 136 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone9ag1129 | 207 | PRINTS | CCAAT-binding transcription factor subunit B signature | 145 | 168 | IPR001289 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone9ag1129 | 207 | ProSitePatterns | NF-YA/HAP2 subunit signature. | 116 | 136 | IPR018362 | GO:0003677(InterPro)|GO:0016602(InterPro) | |
Cone9ag1129 | 207 | PANTHER | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED | 7 | 189 | IPR001289 | GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER) | |
Cone9ag1129 | 207 | Gene3D | - | 111 | 172 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone10ag0122 | Cone-Chr10:625299 | Cone9ag1129 | Cone-Chr9:7752033 | 1.29E-25 | dispersed | |
Cone13ag0477 | Cone-Chr13:5199740 | Cone9ag1129 | Cone-Chr9:7752033 | 4.31E-28 | dispersed | |
Cone19ag0434 | Cone-Chr19:3581597 | Cone9ag1129 | Cone-Chr9:7752033 | 4.16E-29 | dispersed | |
Cone3ag0135 | Cone-Chr3:753481 | Cone9ag1129 | Cone-Chr9:7752033 | 6.55E-25 | dispersed | |
Cone4ag0809 | Cone-Chr4:5131540 | Cone9ag1129 | Cone-Chr9:7752033 | 2.63E-34 | dispersed | |
Cone5ag1448 | Cone-Chr5:9392913 | Cone9ag1129 | Cone-Chr9:7752033 | 1.04E-27 | dispersed | |
Cone7ag0760 | Cone-Chr7:4704469 | Cone9ag1129 | Cone-Chr9:7752033 | 1.46E-33 | dispersed | |
Cone7ag1235 | Cone-Chr7:9162527 | Cone9ag1129 | Cone-Chr9:7752033 | 1.57E-24 | dispersed | |
Cone6ag1141 | Cone-Chr6:8567072 | Cone9ag1129 | Cone-Chr9:7752033 | 7.16E-117 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
46868 | PF00334 | NDK | 6.70E-53 | No_clan | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone9ag1129 | K08064 | - | csv:101205549 | 301.597 |