Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1205 ATGGCAGCTCCTCCAAACCTAGTTCCGCTCGCCTACCGCAACATCACGGCTTCAGTTCCCGAATGGCTCAACAAAGGCGACAACGCATGGCAAATGATAGCCGCCACGCTTGTTGGGCTCCAAAGCATGCCTGGCCTAGTCATTCTCTACGGCAGCATCGTCAAGAAGAAATGGGCCGTGAACTCCGCCTTCATGGCTCTATACGCTTTTGCGGCGGTTATTATCTGTTGGGTCACATGGGGCTACAAGATGTCGTTCGGCCACAAGCTCCTACCATTTTGGGGCAAAGCGGGGCCCGCACTAGGCCAAAAGTTTCTACTCGAGCAGGCCGAGTTGCCCGCGTCAACTCACTATTATAATAATGGCAGCATCGAAACAGATAAGATAGCGCCATGGTATCCGATGGCAACGATGGTTTGGTATCAGGCGGTTTTCGGGGCGATTTCTGTGATATTGCTCGCCGGTTCGGTTCTCGCCAGGATGAATTTCATGGCATGGATGATGTTTGTGCCGTTATGGTTGACTTTTTCTTACACCGTAGGAGCATTTAGTTTGTGGGGCGGTGGTTTCCTGTTTCAATGGGGTGTTATGGATTATGCTGGAGGCTATGTCATTCACGTTTCTGCCGGAATTGCTGGAATCACCGCTGCTTATTGGGTGGGGCCCAGGCTGAAAGCGGACAGGGAAAGATTCCCGCCAAACAACGTGTTACTAATGCTTGCCGGAGCAGGGATGTTGTGGTTGGGATGGGCCGGGTTTAACGGCGGAGTTGCTTACGCGGCCAACATTGACTCTTCCGTTGCTGTTCTAAACACCAACGTTTGTACCGCCACTAGCCTGCTGGTTTGGACAGTGCTCGATGTCATTTTTTTTAAGAAACCTTCGGTGATTGGAGCTGTTCAGGGGATGATTACCGGCCTTGTTTGCATTACACCTGGAGCAGGTCTTGTTCAAGGATGGGCAGCCATAGTAATGGGAGTATTATCAGGAAGCGTCCCATGGTTCACCATGATGATTCTCCACAAGAAATCCAAACTCCTGCAACAAGTAGACGACACGCTAGGTGTCTTCCACACTCATGCTGTGGCCGGATTTTTGGGTGGCATTCTGACTGGGCTGTTTGCTGAGCCCGAACTTTGTGCTCTTTTCCTGCCGGTAACTAACTCGAGGGGCGGCATCTATGGTGGGTCTGGCGGGAAGCAAATTGGGAAACAGATAGTAGGTGGGTTGTTTATAATTGGATGGAATATTGTGGTTACTTCTATTATATGTGTAGTGATCAACACTGTGGTTCCATTGAGAATGGGTGAAGACGAATTGCTTATTGGAGATGATGCAGTTCATGGGGAAGAGGCTTATGCCTTGTGGGGTGATGGGGAGAAGTATGATAATACAAGGCATGGTACTAATTTCGACATGGATACATATAACAGTACAGTAGTGCCAGTTGCATCTGGTGCCACTCAGGTGGTCTAG 1476 49.86 MAAPPNLVPLAYRNITASVPEWLNKGDNAWQMIAATLVGLQSMPGLVILYGSIVKKKWAVNSAFMALYAFAAVIICWVTWGYKMSFGHKLLPFWGKAGPALGQKFLLEQAELPASTHYYNNGSIETDKIAPWYPMATMVWYQAVFGAISVILLAGSVLARMNFMAWMMFVPLWLTFSYTVGAFSLWGGGFLFQWGVMDYAGGYVIHVSAGIAGITAAYWVGPRLKADRERFPPNNVLLMLAGAGMLWLGWAGFNGGVAYAANIDSSVAVLNTNVCTATSLLVWTVLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQGWAAIVMGVLSGSVPWFTMMILHKKSKLLQQVDDTLGVFHTHAVAGFLGGILTGLFAEPELCALFLPVTNSRGGIYGGSGGKQIGKQIVGGLFIIGWNIVVTSIICVVINTVVPLRMGEDELLIGDDAVHGEEAYALWGDGEKYDNTRHGTNFDMDTYNSTVVPVASGATQVV 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8692128 8695676 + Conep09aG0123700.1 Cone9ag1205 445368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1205 491 Pfam Ammonium Transporter Family 29 453 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cone9ag1205 491 PANTHER AMMONIUM TRANSPORTER MEP2 18 465 IPR001905 GO:0005886(PANTHER)|GO:0008519(InterPro)|GO:0008519(PANTHER)|GO:0016020(InterPro)|GO:0072488(InterPro)|GO:0072488(PANTHER)
Cone9ag1205 491 ProSitePatterns Ammonium transporters signature. 198 223 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cone9ag1205 491 PRINTS Rhesus blood group protein signature 268 290 IPR002229 GO:0005886(InterPro)
Cone9ag1205 491 PRINTS Rhesus blood group protein signature 237 255 IPR002229 GO:0005886(InterPro)
Cone9ag1205 491 PRINTS Rhesus blood group protein signature 142 158 IPR002229 GO:0005886(InterPro)
Cone9ag1205 491 SUPERFAMILY Ammonium transporter 22 435 - -
Cone9ag1205 491 Gene3D Ammonium transporter AmtB like domains 7 456 IPR029020 -
Cone9ag1205 491 NCBIfam ammonium transporter 27 453 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cone9ag1205 491 FunFam Ammonium transporter 11 456 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1420 Cone-Chr13:10207071 Cone9ag1205 Cone-Chr9:8692128 1.29E-250 dispersed
Cone19ag1416 Cone-Chr19:9255309 Cone9ag1205 Cone-Chr9:8692128 9.05E-157 dispersed
Cone17ag1035 Cone-Chr17:7841288 Cone9ag1205 Cone-Chr9:8692128 4.58E-210 transposed
Cone20ag0827 Cone-Chr20:5877042 Cone9ag1205 Cone-Chr9:8692128 6.70E-217 transposed
Cone6ag1225 Cone-Chr6:9646996 Cone9ag1205 Cone-Chr9:8692128 7.79E-59 transposed
Cone9ag1631 Cone-Chr9:11611072 Cone9ag1205 Cone-Chr9:8692128 3.28E-193 transposed
Cone6ag1224 Cone-Chr6:9645627 Cone9ag1205 Cone-Chr9:8692128 5.45E-44 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1205 K03320 - rcu:8280769 792.727