Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1212 ATGGGAGATGGCACCACTACCGGCAGCAATAGAAGCCTTGCCTCAGCAGCCTCTAACAAAAGCAATAGCAACAATGGCGGAAGCAACAAACCGGAGTGGTTGCAGCAGTATGATCTGATAGGGAAGATCGGAGAAGGTACTTACGGCCTTGTATTTCTCGCTAAAGTTAAGCCTCCTTCCGTCAATCGTGGAAAGTCCATCGCTATAAAGAAGTTCAAGCAATCCAAGGATGGTGACGGTGTCTCCCCGACAGCTATTCGCGAAATCATGCTACTGCGGGAAATATCTCATGAGAATGTTGTCAAGCTTGTGAACGTTCATATCAATCACACAGATATGTCCCTATACCTGGCTTTTGATTACGCCGAACATGATCTTTATGAAATTATTAGACATCATCGGGACAAGGTTAACCAAACCATCAATCAGTACACTGTTAAATCATTGCTATGGCAGCTGCTCAATGGACTGAATTATCTCCACAGTAACTGGATTATACACCGTGATCTAAAGCCATCTAATATTTTGGTTATGGGAGAGGGAGAAGAACAAGGAGCTGTTAAAATAGCTGATTTTGGACTTGCAAGAGTATACCAAGCTCCCTTGAAGCCACTAGCTGAAAATGGGGTTGTTGTGACAATTTGGTATCGTGCACCTGAGCTGCTTCTTGGAGCAAAGCATTATACAAGTGCAGTCGATATGTGGGCTGTTGGGTGTATTTTTGCTGAGCTTTTGACATTGAAGCCACTATTTCAAGGGGCAGAAGTTAAAGGGATACCAAATCCTTTCCAGCTTGATCAGCTTGATAAGATATTCAAAGTCTTAGGCCATCCAACCCTGGAAAAGTGGCCAACACTAGCAAATCTTCCAAATTGGCAACAAGATGTACAACATATTCAGGGACACAAGTATGATAATGCTGGGCTCTATAGCGTTGTTCACCTTAATCCAAAAAGTCCTGCATATGATCTCCTATCTAAGATGCTCGAATATGATCCACGGAAGCGTATAACAGCAGCTCAAGCTCTGGAGCATGAGTACTTCCGTCTTGAACCTCTTCCAGGGCACAATGCACTTGTGCCCAATCAACCTGGGGAGAAACTTGTCAATTATCCTGTCCGTCCTGTGGACACAACCACAGATTTCGAGGGAACAACCAGCCTCCAACCTCTACCACCGGTGTCATCAGGGAGTCAAGTTCCTGGAAACATGCAGGGTGCTCATGTGGTAGCAAACAGATCGGTCCCTAGGCCAATGCCCGTAGTTGGAATGCAAAGGATGCAACCTCCAGGCATACCAGCTTATAATCTTGCATCTCAGCCTGGTATGGGTGTGCCGATGAATCCTACTGGCATTCCAATGCAGCGAGGTGTTAATGCCCAGGCCCATCAACAACAACAGCATACTCTGCCTTTTCTTACCCTCTATGACTCTACAGTTAAGGAGGAAAGACCCAGGGATGGGGATGACTGGGTACCATCCGCAACAGAAATCCAGACGGTTCTGAGGGGTAACTGGGAGTTTGAAGAAATTTTTGCTTGA 1542 45.65 MGDGTTTGSNRSLASAASNKSNSNNGGSNKPEWLQQYDLIGKIGEGTYGLVFLAKVKPPSVNRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREISHENVVKLVNVHINHTDMSLYLAFDYAEHDLYEIIRHHRDKVNQTINQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEQGAVKIADFGLARVYQAPLKPLAENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGAEVKGIPNPFQLDQLDKIFKVLGHPTLEKWPTLANLPNWQQDVQHIQGHKYDNAGLYSVVHLNPKSPAYDLLSKMLEYDPRKRITAAQALEHEYFRLEPLPGHNALVPNQPGEKLVNYPVRPVDTTTDFEGTTSLQPLPPVSSGSQVPGNMQGAHVVANRSVPRPMPVVGMQRMQPPGIPAYNLASQPGMGVPMNPTGIPMQRGVNAQAHQQQQHTLPFLTLYDSTVKEERPRDGDDWVPSATEIQTVLRGNWEFEEIFA 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8784788 8790889 - Conep09aG0124600.1 Cone9ag1212 445375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1212 513 SUPERFAMILY Protein kinase-like (PK-like) 32 349 IPR011009 -
Cone9ag1212 513 SMART serkin_6 37 348 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag1212 513 MobiDBLite consensus disorder prediction 383 403 - -
Cone9ag1212 513 FunFam Cyclin-dependent kinase e-1 25 121 - -
Cone9ag1212 513 ProSiteProfiles Protein kinase domain profile. 37 348 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag1212 513 MobiDBLite consensus disorder prediction 1 31 - -
Cone9ag1212 513 CDD STKc_CDK8_like 36 348 - -
Cone9ag1212 513 Gene3D Transferase(Phosphotransferase) domain 1 121 360 - -
Cone9ag1212 513 PANTHER CELL DIVISION PROTEIN KINASE 36 348 IPR050108 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0016592(PANTHER)
Cone9ag1212 513 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone9ag1212 513 Gene3D Phosphorylase Kinase; domain 1 16 120 - -
Cone9ag1212 513 Pfam Protein kinase domain 37 348 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag1212 513 ProSitePatterns Protein kinases ATP-binding region signature. 43 71 IPR017441 GO:0005524(InterPro)
Cone9ag1212 513 FunFam Putative cyclin-dependent kinase E-1 122 361 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag0731 Cone-Chr8:7347584 Cone9ag1212 Cone-Chr9:8784788 1.64E-73 dispersed
Cone8ag1512 Cone-Chr8:11426498 Cone9ag1212 Cone-Chr9:8784788 2.48E-51 dispersed
Cone9ag0171 Cone-Chr9:760275 Cone9ag1212 Cone-Chr9:8784788 7.54E-51 dispersed
Cone9ag1212 Cone-Chr9:8784788 Cone15ag0362 Cone-Chr15:1672121 5.39E-44 dispersed
Cone5ag0397 Cone-Chr5:1698040 Cone9ag1212 Cone-Chr9:8784788 2.57E-76 wgd
Cone6ag1233 Cone-Chr6:9808097 Cone9ag1212 Cone-Chr9:8784788 5.29e-318 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83203 PF01544 CorA 7.00E-11 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1212 K02208 - csv:101203984 791.186