Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone9ag1229 | ATGAGCACCGGAAGCAGCAGGAAACGCCCGGCGCCGCCGCAGAAGCCTTCATCAGCACCACAGGCCAAGCATCAAGCACTACATACACCCGAAGAAGAGGAATTTCTCGACGAGGATGTTTTCCTGGACGATACACTTCTCGATGAGGACGCTCTCATCCTCCGTGACATTGAGGAGCGTCAAGCCTTAGCTTCCCGTCTCTCCAAGTGGTCTCGTCCACCTCTATCTCAAGCTTACGTCTCTCACTCTCAGAGCGTCGTTTTTCAGCAGTTAGAGATTGACTACGTGATCGGAGAGACTAACAAAGCATTGCTGCCAAAATCGTCCGGCCTCTCCGCCATTATAAGAATCTTTGGGGTTACAAGAGAAGGACACAGCGTGTGCTGCCATGTCCATGGATTTGAGCCCTACTTTTATATCAGCTGTCCTCCAGGAATGGGTCCTGATGACATCTCCTGTTTTCATCAAGTCCTTGAGGGGAGGATGAGGGAGGTCAATAGGAATAGTAAGGTGCCAAGATTTGTATGTCGTATTGAATTGGTGCAGAAGAGGAGTATCATGTACTACCAGCAGCAGAGTTCTCATCCCTTTCTCAAAATTGTAGTTGCACTGCCAACGATGGTTGCTAGCTGTCGCGGTATTCTTGATAGAGGAATACAAATTGATGGAATTGGTATGAAGAGCTTTATGACATATGAAAGCAATGTTCTTTTTGCACTGCGTTTCATGATTGATTGCAACATTGTTGGGGGAAACTGGATTGAAGTACCTGTGGGCAAGTATAGGAAAACAGAGAAGAATTTTTCTTATTGTCAATCAGAGTTTGACTGCCTGTATCCTAATGATTATTCAGAGTTGATCAGCCATCCTCCAGAAGGGGAATTCTCAAAGATGGCCCCATTCCGCATATTAAGTTTTGATATTGAGTGTGCTGGACGTAAAGGTCATTTTCCTGAGCCTACTCATGATCCTGTTATCCAGGTGGCCAATCTAGTTACTCTGCAAGGAGAGGACCAACCGTTTGTCCGTAATGTCATGACCCTTAAGTCATGCTCTCCCATAGTTGGTGTTGATGTGATGTCATTTGACACAGAAAGGGAGGTTTTGCTTGCCTGGAAGGATTTTATACGTGAAGTGGACCCTGATATAATTATTGGATATAACATCTGCAAATTTGATTTACCGTATCTCATTGAGAGAGCTGAGACATTGGGAATAGATGAATTTCCAATACTAGGTCGCATTAGGAACAGCCGGGTTCGTGTCAAGGATACAACCTTTTCTTCAAGGCAGTTTGGAACCAGGGAAAGTAAAGAAGTGTCAGTGGAGGGGAGAGTTCAATTTGATTTGCTCCAGGCCATGCAGCGTGATTATAAATTAAGTTCTTATTCTTTGAATTCTGTTTCATCACATTTTCTTTCGGAGCAGAAAGAGGATGTTCACCATTCAATTATCTCTGATCTTCAGAATGGTAATGCCGAAACCAGGAGGCGGCTTGCTGTTTATTGTTTGAAGGATGCTTATCTGCCCCAACGGCTTTTGGACAAACTGATGTTCATTTACAATTATGTGGAGATGGCTAGAGTCACTGGTGTTCCAATCTCTTTCCTTCTTTCAAGAGGGCAAAGCATTAAAGTACTCTCCCAACTTCTAAGGAAGGCGAATCAAACGAATCTTGTTCTTCCTAATGTTAAACAGGCAGGATCTGAGCAAGGAACTTATGAAGGCGCCACTGTTTTGGAGGCAAGAGCAGGATTTTATGAGAAGCCCATTGCAACGTTGGATTTTGCTTCCTTATATCCATCAATAATGATGGCGTATAATTTGTGTTATTGCACTCTGGTAACTCCTGAAGATGTTCGTAAGTTCAACCTCCCTCCAGAAAGTGTCAATAAAACTCCATCTGGGGAGACATTTGTGAAATCAAATTTACAGAAGGGAATACTTCCTGAAATTCTCGAAGAATTATTAACTGCTCGTAAAAGGGCAAAAGCTGATTTGAAGGAGGTGAAGGATCCCCTTGTGAAGGCCGTGCTAGATGGTAGACAGCTGGCATTGAAGATAAGCGCAAATTCTGTGTATGGGTTTACAGGAGCTACTATTGGTCAGTTACCTTGCCTTGAGATATCTTCAAGTGTAACAAGCTATGGTCGGCAAATGATTGAGCACACAAAAAAACTCGTAGAAGATAAATTCACAATACTTGGAGGTTATGAGCATAATGCCGAGGTTATATATGGAGATACAGATTCGGTGATGGTACAATTTGGTGTGTCCACTGTAGAAGAAGCAATGAACTTGGGAAGGGAAGCTGCTGACTACATTAGTTGCACATTCATCAAACCTATCAAGTTGGAGTTTGAGAAGGTTTATTTTCCGTATTTGTTGATTAGCAAGAAGAGATATGCTGGTTTGTTCTGGACCCGTCCGGAGAAGTTTGATAAAATGGACACCAAAGGCATTGAAACAGTTCGAAGGGATAATTGCTTATTAGTGAAAAACGTGGTTACTGAGTGCCTGCACAAAATTCTGATTGACAGAGACATTCCTGGTGCAGTCCAATATGTCAAGAACACTATTTCAGATCTTCTTATGAACCGCATGGACTTGTCACTTTTGGTCATCACCAAGGGTCTGACAAAGACAGGAGATGATTATGAGGTGAAGGTTGCCCATGTTGAACTCGCTGAACGCATGCGTAAGCGTGATGCTGCCACTGCTCCAAATGTTGGGGATCGAGTACCTTATGTTATTATTCAAGCTGTAAAAGGGGCCAAGGCATACGAGAAGTCAGAGGACCCCATTTATGTGCTAGAGAATAACATATCAATAGACACTCAGTACTATCTCAACAATCAACTTAGCAAGCCTCTCTTGCGAATATTTGATCCCATCATAAAAAATGCTGAAAAGGAACTTCTTCAAGGAGATCACACAAGATCAATATCCAAATCTACTCCGTCAAATGCTGGCATTATGAGATTTGCTAAGAAACAGCTGACATGCATTGGCTGCAAAGCTCTCCTTAGTATCTGA | 3036 | 42.89 | MSTGSSRKRPAPPQKPSSAPQAKHQALHTPEEEEFLDEDVFLDDTLLDEDALILRDIEERQALASRLSKWSRPPLSQAYVSHSQSVVFQQLEIDYVIGETNKALLPKSSGLSAIIRIFGVTREGHSVCCHVHGFEPYFYISCPPGMGPDDISCFHQVLEGRMREVNRNSKVPRFVCRIELVQKRSIMYYQQQSSHPFLKIVVALPTMVASCRGILDRGIQIDGIGMKSFMTYESNVLFALRFMIDCNIVGGNWIEVPVGKYRKTEKNFSYCQSEFDCLYPNDYSELISHPPEGEFSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQVANLVTLQGEDQPFVRNVMTLKSCSPIVGVDVMSFDTEREVLLAWKDFIREVDPDIIIGYNICKFDLPYLIERAETLGIDEFPILGRIRNSRVRVKDTTFSSRQFGTRESKEVSVEGRVQFDLLQAMQRDYKLSSYSLNSVSSHFLSEQKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKANQTNLVLPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPEDVRKFNLPPESVNKTPSGETFVKSNLQKGILPEILEELLTARKRAKADLKEVKDPLVKAVLDGRQLALKISANSVYGFTGATIGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTILGGYEHNAEVIYGDTDSVMVQFGVSTVEEAMNLGREAADYISCTFIKPIKLEFEKVYFPYLLISKKRYAGLFWTRPEKFDKMDTKGIETVRRDNCLLVKNVVTECLHKILIDRDIPGAVQYVKNTISDLLMNRMDLSLLVITKGLTKTGDDYEVKVAHVELAERMRKRDAATAPNVGDRVPYVIIQAVKGAKAYEKSEDPIYVLENNISIDTQYYLNNQLSKPLLRIFDPIIKNAEKELLQGDHTRSISKSTPSNAGIMRFAKKQLTCIGCKALLSI | 1011 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 8954456 | 8970330 | + | Conep09aG0126300.1 | Cone9ag1229 | 445392 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone9ag1229 | 1011 | FunFam | DNA polymerase | 820 | 976 | - | - | |
Cone9ag1229 | 1011 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
Cone9ag1229 | 1011 | FunFam | DNA polymerase | 647 | 699 | - | - | |
Cone9ag1229 | 1011 | Gene3D | Helix hairpin bin | 647 | 699 | - | - | |
Cone9ag1229 | 1011 | CDD | DNA_polB_delta_exo | 296 | 524 | - | - | |
Cone9ag1229 | 1011 | FunFam | DNA polymerase | 339 | 572 | - | - | |
Cone9ag1229 | 1011 | PANTHER | DNA POLYMERASE CATALYTIC SUBUNIT | 69 | 1003 | IPR050240 | GO:0003887(PANTHER)|GO:0006261(PANTHER)|GO:0006287(PANTHER)|GO:0006297(PANTHER)|GO:0008296(PANTHER)|GO:0043625(PANTHER)|GO:0045004(PANTHER) | |
Cone9ag1229 | 1011 | ProSitePatterns | DNA polymerase family B signature. | 746 | 754 | IPR017964 | GO:0000166(InterPro)|GO:0003676(InterPro) | |
Cone9ag1229 | 1011 | Pfam | DNA polymerase family B, exonuclease domain | 231 | 468 | IPR006133 | - | |
Cone9ag1229 | 1011 | Gene3D | Palm domain of DNA polymerase | 573 | 803 | IPR023211 | - | |
Cone9ag1229 | 1011 | NCBIfam | DNA polymerase (pol2) | 565 | 962 | - | - | |
Cone9ag1229 | 1011 | SUPERFAMILY | DNA/RNA polymerases | 558 | 970 | IPR043502 | - | |
Cone9ag1229 | 1011 | Gene3D | DNA Polymerase, chain B, domain 1 | 91 | 268 | - | - | |
Cone9ag1229 | 1011 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Cone9ag1229 | 1011 | CDD | POLBc_delta | 573 | 966 | - | - | |
Cone9ag1229 | 1011 | Pfam | DNA polymerase family B | 532 | 965 | IPR006134 | GO:0000166(InterPro)|GO:0003677(InterPro) | |
Cone9ag1229 | 1011 | FunFam | DNA polymerase | 92 | 267 | - | - | |
Cone9ag1229 | 1011 | SMART | polmehr3 | 299 | 758 | IPR006172 | GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro) | |
Cone9ag1229 | 1011 | SUPERFAMILY | Ribonuclease H-like | 113 | 538 | IPR012337 | - | |
Cone9ag1229 | 1011 | Gene3D | - | 820 | 975 | IPR042087 | - | |
Cone9ag1229 | 1011 | Gene3D | - | 300 | 518 | IPR036397 | GO:0003676(InterPro) | |
Cone9ag1229 | 1011 | PRINTS | DNA-directed DNA-polymerase family B signature | 683 | 695 | IPR006172 | GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro) | |
Cone9ag1229 | 1011 | PRINTS | DNA-directed DNA-polymerase family B signature | 744 | 752 | IPR006172 | GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro) | |
Cone9ag1229 | 1011 | PRINTS | DNA-directed DNA-polymerase family B signature | 591 | 604 | IPR006172 | GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone10ag0764 | Cone-Chr10:3849291 | Cone9ag1229 | Cone-Chr9:8954456 | 1.49E-83 | dispersed | |
Cone11ag1102 | Cone-Chr11:8588212 | Cone9ag1229 | Cone-Chr9:8954456 | 4.94E-44 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone9ag1229 | K02327 | - | vvi:100246530 | 1764.97 |