Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1229 ATGAGCACCGGAAGCAGCAGGAAACGCCCGGCGCCGCCGCAGAAGCCTTCATCAGCACCACAGGCCAAGCATCAAGCACTACATACACCCGAAGAAGAGGAATTTCTCGACGAGGATGTTTTCCTGGACGATACACTTCTCGATGAGGACGCTCTCATCCTCCGTGACATTGAGGAGCGTCAAGCCTTAGCTTCCCGTCTCTCCAAGTGGTCTCGTCCACCTCTATCTCAAGCTTACGTCTCTCACTCTCAGAGCGTCGTTTTTCAGCAGTTAGAGATTGACTACGTGATCGGAGAGACTAACAAAGCATTGCTGCCAAAATCGTCCGGCCTCTCCGCCATTATAAGAATCTTTGGGGTTACAAGAGAAGGACACAGCGTGTGCTGCCATGTCCATGGATTTGAGCCCTACTTTTATATCAGCTGTCCTCCAGGAATGGGTCCTGATGACATCTCCTGTTTTCATCAAGTCCTTGAGGGGAGGATGAGGGAGGTCAATAGGAATAGTAAGGTGCCAAGATTTGTATGTCGTATTGAATTGGTGCAGAAGAGGAGTATCATGTACTACCAGCAGCAGAGTTCTCATCCCTTTCTCAAAATTGTAGTTGCACTGCCAACGATGGTTGCTAGCTGTCGCGGTATTCTTGATAGAGGAATACAAATTGATGGAATTGGTATGAAGAGCTTTATGACATATGAAAGCAATGTTCTTTTTGCACTGCGTTTCATGATTGATTGCAACATTGTTGGGGGAAACTGGATTGAAGTACCTGTGGGCAAGTATAGGAAAACAGAGAAGAATTTTTCTTATTGTCAATCAGAGTTTGACTGCCTGTATCCTAATGATTATTCAGAGTTGATCAGCCATCCTCCAGAAGGGGAATTCTCAAAGATGGCCCCATTCCGCATATTAAGTTTTGATATTGAGTGTGCTGGACGTAAAGGTCATTTTCCTGAGCCTACTCATGATCCTGTTATCCAGGTGGCCAATCTAGTTACTCTGCAAGGAGAGGACCAACCGTTTGTCCGTAATGTCATGACCCTTAAGTCATGCTCTCCCATAGTTGGTGTTGATGTGATGTCATTTGACACAGAAAGGGAGGTTTTGCTTGCCTGGAAGGATTTTATACGTGAAGTGGACCCTGATATAATTATTGGATATAACATCTGCAAATTTGATTTACCGTATCTCATTGAGAGAGCTGAGACATTGGGAATAGATGAATTTCCAATACTAGGTCGCATTAGGAACAGCCGGGTTCGTGTCAAGGATACAACCTTTTCTTCAAGGCAGTTTGGAACCAGGGAAAGTAAAGAAGTGTCAGTGGAGGGGAGAGTTCAATTTGATTTGCTCCAGGCCATGCAGCGTGATTATAAATTAAGTTCTTATTCTTTGAATTCTGTTTCATCACATTTTCTTTCGGAGCAGAAAGAGGATGTTCACCATTCAATTATCTCTGATCTTCAGAATGGTAATGCCGAAACCAGGAGGCGGCTTGCTGTTTATTGTTTGAAGGATGCTTATCTGCCCCAACGGCTTTTGGACAAACTGATGTTCATTTACAATTATGTGGAGATGGCTAGAGTCACTGGTGTTCCAATCTCTTTCCTTCTTTCAAGAGGGCAAAGCATTAAAGTACTCTCCCAACTTCTAAGGAAGGCGAATCAAACGAATCTTGTTCTTCCTAATGTTAAACAGGCAGGATCTGAGCAAGGAACTTATGAAGGCGCCACTGTTTTGGAGGCAAGAGCAGGATTTTATGAGAAGCCCATTGCAACGTTGGATTTTGCTTCCTTATATCCATCAATAATGATGGCGTATAATTTGTGTTATTGCACTCTGGTAACTCCTGAAGATGTTCGTAAGTTCAACCTCCCTCCAGAAAGTGTCAATAAAACTCCATCTGGGGAGACATTTGTGAAATCAAATTTACAGAAGGGAATACTTCCTGAAATTCTCGAAGAATTATTAACTGCTCGTAAAAGGGCAAAAGCTGATTTGAAGGAGGTGAAGGATCCCCTTGTGAAGGCCGTGCTAGATGGTAGACAGCTGGCATTGAAGATAAGCGCAAATTCTGTGTATGGGTTTACAGGAGCTACTATTGGTCAGTTACCTTGCCTTGAGATATCTTCAAGTGTAACAAGCTATGGTCGGCAAATGATTGAGCACACAAAAAAACTCGTAGAAGATAAATTCACAATACTTGGAGGTTATGAGCATAATGCCGAGGTTATATATGGAGATACAGATTCGGTGATGGTACAATTTGGTGTGTCCACTGTAGAAGAAGCAATGAACTTGGGAAGGGAAGCTGCTGACTACATTAGTTGCACATTCATCAAACCTATCAAGTTGGAGTTTGAGAAGGTTTATTTTCCGTATTTGTTGATTAGCAAGAAGAGATATGCTGGTTTGTTCTGGACCCGTCCGGAGAAGTTTGATAAAATGGACACCAAAGGCATTGAAACAGTTCGAAGGGATAATTGCTTATTAGTGAAAAACGTGGTTACTGAGTGCCTGCACAAAATTCTGATTGACAGAGACATTCCTGGTGCAGTCCAATATGTCAAGAACACTATTTCAGATCTTCTTATGAACCGCATGGACTTGTCACTTTTGGTCATCACCAAGGGTCTGACAAAGACAGGAGATGATTATGAGGTGAAGGTTGCCCATGTTGAACTCGCTGAACGCATGCGTAAGCGTGATGCTGCCACTGCTCCAAATGTTGGGGATCGAGTACCTTATGTTATTATTCAAGCTGTAAAAGGGGCCAAGGCATACGAGAAGTCAGAGGACCCCATTTATGTGCTAGAGAATAACATATCAATAGACACTCAGTACTATCTCAACAATCAACTTAGCAAGCCTCTCTTGCGAATATTTGATCCCATCATAAAAAATGCTGAAAAGGAACTTCTTCAAGGAGATCACACAAGATCAATATCCAAATCTACTCCGTCAAATGCTGGCATTATGAGATTTGCTAAGAAACAGCTGACATGCATTGGCTGCAAAGCTCTCCTTAGTATCTGA 3036 42.89 MSTGSSRKRPAPPQKPSSAPQAKHQALHTPEEEEFLDEDVFLDDTLLDEDALILRDIEERQALASRLSKWSRPPLSQAYVSHSQSVVFQQLEIDYVIGETNKALLPKSSGLSAIIRIFGVTREGHSVCCHVHGFEPYFYISCPPGMGPDDISCFHQVLEGRMREVNRNSKVPRFVCRIELVQKRSIMYYQQQSSHPFLKIVVALPTMVASCRGILDRGIQIDGIGMKSFMTYESNVLFALRFMIDCNIVGGNWIEVPVGKYRKTEKNFSYCQSEFDCLYPNDYSELISHPPEGEFSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQVANLVTLQGEDQPFVRNVMTLKSCSPIVGVDVMSFDTEREVLLAWKDFIREVDPDIIIGYNICKFDLPYLIERAETLGIDEFPILGRIRNSRVRVKDTTFSSRQFGTRESKEVSVEGRVQFDLLQAMQRDYKLSSYSLNSVSSHFLSEQKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKANQTNLVLPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPEDVRKFNLPPESVNKTPSGETFVKSNLQKGILPEILEELLTARKRAKADLKEVKDPLVKAVLDGRQLALKISANSVYGFTGATIGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTILGGYEHNAEVIYGDTDSVMVQFGVSTVEEAMNLGREAADYISCTFIKPIKLEFEKVYFPYLLISKKRYAGLFWTRPEKFDKMDTKGIETVRRDNCLLVKNVVTECLHKILIDRDIPGAVQYVKNTISDLLMNRMDLSLLVITKGLTKTGDDYEVKVAHVELAERMRKRDAATAPNVGDRVPYVIIQAVKGAKAYEKSEDPIYVLENNISIDTQYYLNNQLSKPLLRIFDPIIKNAEKELLQGDHTRSISKSTPSNAGIMRFAKKQLTCIGCKALLSI 1011
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8954456 8970330 + Conep09aG0126300.1 Cone9ag1229 445392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1229 1011 FunFam DNA polymerase 820 976 - -
Cone9ag1229 1011 MobiDBLite consensus disorder prediction 1 33 - -
Cone9ag1229 1011 FunFam DNA polymerase 647 699 - -
Cone9ag1229 1011 Gene3D Helix hairpin bin 647 699 - -
Cone9ag1229 1011 CDD DNA_polB_delta_exo 296 524 - -
Cone9ag1229 1011 FunFam DNA polymerase 339 572 - -
Cone9ag1229 1011 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 69 1003 IPR050240 GO:0003887(PANTHER)|GO:0006261(PANTHER)|GO:0006287(PANTHER)|GO:0006297(PANTHER)|GO:0008296(PANTHER)|GO:0043625(PANTHER)|GO:0045004(PANTHER)
Cone9ag1229 1011 ProSitePatterns DNA polymerase family B signature. 746 754 IPR017964 GO:0000166(InterPro)|GO:0003676(InterPro)
Cone9ag1229 1011 Pfam DNA polymerase family B, exonuclease domain 231 468 IPR006133 -
Cone9ag1229 1011 Gene3D Palm domain of DNA polymerase 573 803 IPR023211 -
Cone9ag1229 1011 NCBIfam DNA polymerase (pol2) 565 962 - -
Cone9ag1229 1011 SUPERFAMILY DNA/RNA polymerases 558 970 IPR043502 -
Cone9ag1229 1011 Gene3D DNA Polymerase, chain B, domain 1 91 268 - -
Cone9ag1229 1011 MobiDBLite consensus disorder prediction 1 24 - -
Cone9ag1229 1011 CDD POLBc_delta 573 966 - -
Cone9ag1229 1011 Pfam DNA polymerase family B 532 965 IPR006134 GO:0000166(InterPro)|GO:0003677(InterPro)
Cone9ag1229 1011 FunFam DNA polymerase 92 267 - -
Cone9ag1229 1011 SMART polmehr3 299 758 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Cone9ag1229 1011 SUPERFAMILY Ribonuclease H-like 113 538 IPR012337 -
Cone9ag1229 1011 Gene3D - 820 975 IPR042087 -
Cone9ag1229 1011 Gene3D - 300 518 IPR036397 GO:0003676(InterPro)
Cone9ag1229 1011 PRINTS DNA-directed DNA-polymerase family B signature 683 695 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Cone9ag1229 1011 PRINTS DNA-directed DNA-polymerase family B signature 744 752 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Cone9ag1229 1011 PRINTS DNA-directed DNA-polymerase family B signature 591 604 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0764 Cone-Chr10:3849291 Cone9ag1229 Cone-Chr9:8954456 1.49E-83 dispersed
Cone11ag1102 Cone-Chr11:8588212 Cone9ag1229 Cone-Chr9:8954456 4.94E-44 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1229 K02327 - vvi:100246530 1764.97