Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1230 ATGAAGAAGGTGATCCCAGTGAATGGTAAAATCTCGAAGGATGCCAAAGAGACCGTTCAAGAATGTGTCTCGGAATTCATCAGCTTTGTTACTGGTGAAGCTTCGGATAAATGCCAAAGAGAAAAAAGAAAGACCATTAATGGTGATGATATTATGGGGGCTATAACTACATTAGGGTTTGAAGATTACGTGCAACCGCTTAAGGTTTACCTCAGTAAGTATAAAGAGATTGAAGGGGAGAAGGTTCATATGCCAAAACAACTAAAATCTTCTTCGCAACAAGTAGGGCAAGTACAAGATGAACATCTTGAACAAGAACAAAAATTAGGGTTTTCAGATCATCATCTATATTCTCCGACGAATATTCTGTCTCATGCTGCTTCGTTCTTGCCTACGGATCATCATCACCAAGTGCCGTTTTTGTTGCCCGATTTCTCACCAAACGATACATTACAAAAGCAAATATTACCGCATCCACAAGATCATCAGGTTATGCAGTCATGGGGCGATGGTAGGGAGTTTAAAAAGATGAAAGGATTTACAATTAATTGA 552 39.13 MKKVIPVNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIMGAITTLGFEDYVQPLKVYLSKYKEIEGEKVHMPKQLKSSSQQVGQVQDEHLEQEQKLGFSDHHLYSPTNILSHAASFLPTDHHHQVPFLLPDFSPNDTLQKQILPHPQDHQVMQSWGDGREFKKMKGFTIN 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8978709 8979260 + Conep09aG0126400.1 Cone9ag1230 445393

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1230 183 ProSitePatterns NF-YB/HAP3 subunit signature. 22 38 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone9ag1230 183 SUPERFAMILY Histone-fold 1 114 IPR009072 GO:0046982(InterPro)
Cone9ag1230 183 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 1 54 IPR003958 -
Cone9ag1230 183 PRINTS CCAAT-binding transcription factor subunit A signature 38 56 - -
Cone9ag1230 183 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Cone9ag1230 183 PRINTS CCAAT-binding transcription factor subunit A signature 19 37 - -
Cone9ag1230 183 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 101 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
Cone9ag1230 183 Gene3D Histone, subunit A 1 115 IPR009072 GO:0046982(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1230 K08065 - - cit:102611608 201.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone9ag1230 Cone-Chr9:8978709 Cone8ag1366 Cone-Chr8:10907603 6.88E-42 transposed
Cone9ag1230 Cone-Chr9:8978709 Cone12ag1312 Cone-Chr12:9924263 3.44E-42 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone5ag1798 . 4 224 CCAAT-HAP3 Transcription Factor Family AT5G47670 54.4 3.6e-56 215.7
Cone1ag0062 . 1 224 CCAAT-HAP3 Transcription Factor Family AT5G47670 52.3 3.0e-55 212.6
Cone15ag1243 . 54 154 CCAAT-HAP3 Transcription Factor Family AT5G47670 86.1 2.3e-47 186.4
Cone14ag1222 . 1 90 CCAAT-HAP3 Transcription Factor Family AT5G47670 87.8 7.3e-41 164.9
Cone8ag1366 . 8 130 CCAAT-HAP3 Transcription Factor Family AT5G47670 56.9 4.9e-37 152.1
Cone15ag1238 . 15 118 CCAAT-HAP3 Transcription Factor Family AT5G47670 65.4 4.9e-37 152.1
Cone19ag1279 . 25 149 CCAAT-HAP3 Transcription Factor Family AT5G47670 54.8 1.4e-36 150.6
Cone15ag1243 . 56 183 CCAAT-HAP3 Transcription Factor Family AT1G21970 71.9 1.9e-49 193.4
Cone5ag1798 . 21 147 CCAAT-HAP3 Transcription Factor Family AT1G21970 68.5 1.8e-47 186.8
Cone1ag0062 . 1 147 CCAAT-HAP3 Transcription Factor Family AT1G21970 59.1 2.0e-46 183.3
Cone14ag1222 . 1 164 CCAAT-HAP3 Transcription Factor Family AT1G21970 54.3 2.7e-43 172.9
Cone10ag0264 . 9 133 CCAAT-HAP3 Transcription Factor Family AT1G21970 55.5 1.4e-36 150.6
Cone3ag0290 . 9 133 CCAAT-HAP3 Transcription Factor Family AT1G21970 55.5 1.9e-36 150.2
Cone12ag1312 . 1 159 CCAAT-HAP3 Transcription Factor Family AT4G14540 69.5 2.0e-53 206.1
Cone8ag1366 . 1 158 CCAAT-HAP3 Transcription Factor Family AT4G14540 68.7 3.7e-52 201.8
Cone14ag1217 . 1 129 CCAAT-HAP3 Transcription Factor Family AT4G14540 83.2 8.3e-52 200.7
Cone15ag1238 . 1 127 CCAAT-HAP3 Transcription Factor Family AT4G14540 81.9 7.0e-51 197.6
Cone5ag0323 . 11 131 CCAAT-HAP3 Transcription Factor Family AT4G14540 75.2 6.1e-47 184.5
Cone12ag0762 . 24 126 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.4 8.8e-46 180.6
Cone8ag0794 . 24 126 CCAAT-HAP3 Transcription Factor Family AT4G14540 85.4 2.6e-45 179.1
Cone3ag0290 . 22 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 81.6 7.5e-45 177.6
Cone10ag0264 . 22 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 81.6 7.5e-45 177.6
Cone19ag1279 . 25 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 82.0 2.2e-44 176.0
Cone1ag1336 . 11 127 CCAAT-HAP3 Transcription Factor Family AT4G14540 73.3 3.5e-42 168.7
Cone13ag1293 . 10 117 CCAAT-HAP3 Transcription Factor Family AT4G14540 76.9 3.5e-42 168.7
Cone17ag0499 . 55 164 CCAAT-HAP3 Transcription Factor Family AT4G14540 67.3 1.8e-38 156.4
Cone20ag0927 . 40 147 CCAAT-HAP3 Transcription Factor Family AT4G14540 68.5 6.8e-38 154.5
Cone5ag1798 . 44 141 CCAAT-HAP3 Transcription Factor Family AT4G14540 70.4 1.2e-37 153.7
Cone1ag0062 . 44 141 CCAAT-HAP3 Transcription Factor Family AT4G14540 69.4 7.5e-37 151.0
Cone3ag0792 . 5 105 CCAAT-HAP3 Transcription Factor Family AT1G09030 77.7 2.8e-40 162.2
Cone10ag0770 . 5 107 CCAAT-HAP3 Transcription Factor Family AT1G09030 73.8 1.5e-38 156.4
Cone3ag0290 . 1 116 CCAAT-HAP3 Transcription Factor Family AT2G38880 81.0 9.6e-50 193.7
Cone10ag0264 . 1 116 CCAAT-HAP3 Transcription Factor Family AT2G38880 81.0 9.6e-50 193.7
Cone19ag1279 . 1 116 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.3 1.4e-48 189.9
Cone5ag0323 . 1 117 CCAAT-HAP3 Transcription Factor Family AT2G38880 78.6 2.0e-47 186.0
Cone13ag1293 . 1 116 CCAAT-HAP3 Transcription Factor Family AT2G38880 77.6 9.9e-47 183.7
Cone1ag1336 . 1 117 CCAAT-HAP3 Transcription Factor Family AT2G38880 76.9 1.6e-44 176.4
Cone15ag1238 . 1 114 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.8 2.5e-42 169.1
Cone12ag1312 . 1 109 CCAAT-HAP3 Transcription Factor Family AT2G38880 71.2 7.4e-42 167.5
Cone14ag1217 . 1 114 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.8 7.4e-42 167.5
Cone8ag1366 . 1 109 CCAAT-HAP3 Transcription Factor Family AT2G38880 71.2 1.3e-41 166.8
Cone12ag0762 . 8 117 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.9 4.8e-41 164.9
Cone8ag0794 . 8 117 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.9 8.1e-41 164.1
Cone17ag0499 . 45 146 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.5 5.8e-39 157.9
Cone20ag0927 . 39 144 CCAAT-HAP3 Transcription Factor Family AT2G38880 68.9 2.2e-38 156.0
Cone20ag0927 . 49 147 CCAAT-HAP3 Transcription Factor Family AT2G47810 82.8 1.8e-43 172.9
Cone17ag0499 . 52 149 CCAAT-HAP3 Transcription Factor Family AT2G47810 82.7 2.4e-43 172.6
Cone14ag0770 . 18 116 CCAAT-HAP3 Transcription Factor Family AT2G47810 75.8 2.7e-39 159.1
Cone15ag1238 . 19 118 CCAAT-HAP3 Transcription Factor Family AT2G47810 72.0 2.7e-39 159.1
Cone14ag1217 . 23 118 CCAAT-HAP3 Transcription Factor Family AT2G47810 75.0 1.4e-38 156.8
Cone12ag0762 . 27 122 CCAAT-HAP3 Transcription Factor Family AT2G47810 75.0 5.2e-38 154.8
Cone8ag0794 . 27 122 CCAAT-HAP3 Transcription Factor Family AT2G47810 74.0 1.5e-37 153.3
Cone8ag1366 . 18 124 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.6 2.0e-37 152.9
Cone12ag1312 . 18 124 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.6 2.0e-37 152.9
Cone5ag0323 . 26 132 CCAAT-HAP3 Transcription Factor Family AT2G47810 64.5 3.3e-37 152.1
Cone3ag0290 . 24 131 CCAAT-HAP3 Transcription Factor Family AT2G47810 66.1 4.4e-37 151.8
Cone10ag0264 . 24 131 CCAAT-HAP3 Transcription Factor Family AT2G47810 66.1 4.4e-37 151.8
Cone10ag0770 . 5 106 CCAAT-HAP3 Transcription Factor Family AT2G47810 66.7 9.7e-37 150.6
Cone10ag0264 . 1 170 CCAAT-HAP3 Transcription Factor Family AT2G37060 74.3 9.4e-62 233.8
Cone3ag0290 . 1 151 CCAAT-HAP3 Transcription Factor Family AT2G37060 78.8 8.8e-60 227.3
Cone19ag1279 . 7 173 CCAAT-HAP3 Transcription Factor Family AT2G37060 72.3 4.4e-59 224.9
Cone5ag0323 . 1 167 CCAAT-HAP3 Transcription Factor Family AT2G37060 67.8 1.3e-55 213.4
Cone13ag1293 . 1 128 CCAAT-HAP3 Transcription Factor Family AT2G37060 79.5 3.7e-50 195.3
Cone1ag1336 . 1 133 CCAAT-HAP3 Transcription Factor Family AT2G37060 72.5 3.2e-49 192.2
Cone14ag1217 . 1 117 CCAAT-HAP3 Transcription Factor Family AT2G37060 72.4 6.8e-44 174.5
Cone15ag1238 . 1 117 CCAAT-HAP3 Transcription Factor Family AT2G37060 72.4 8.9e-44 174.1
Cone12ag1312 . 1 121 CCAAT-HAP3 Transcription Factor Family AT2G37060 65.2 4.4e-43 171.8
Cone8ag1366 . 1 121 CCAAT-HAP3 Transcription Factor Family AT2G37060 65.2 5.8e-43 171.4
Cone12ag0762 . 27 119 CCAAT-HAP3 Transcription Factor Family AT2G37060 80.6 6.0e-40 161.4
Cone8ag0794 . 27 119 CCAAT-HAP3 Transcription Factor Family AT2G37060 79.6 1.7e-39 159.8
Cone20ag0927 . 38 151 CCAAT-HAP3 Transcription Factor Family AT2G37060 63.2 4.3e-38 155.2
Cone17ag0499 . 40 153 CCAAT-HAP3 Transcription Factor Family AT2G37060 63.2 5.6e-38 154.8
Cone5ag1798 . 45 148 CCAAT-HAP3 Transcription Factor Family AT2G37060 67.3 9.5e-38 154.1
Cone1ag0062 . 30 148 CCAAT-HAP3 Transcription Factor Family AT2G37060 59.2 4.7e-37 151.8
Cone8ag0794 . 14 122 CCAAT-HAP3 Transcription Factor Family AT2G13570 80.9 1.5e-45 180.3
Cone12ag0762 . 14 122 CCAAT-HAP3 Transcription Factor Family AT2G13570 80.9 2.0e-45 179.9
Cone3ag0290 . 4 125 CCAAT-HAP3 Transcription Factor Family AT2G13570 67.2 5.5e-43 171.8
Cone10ag0264 . 4 125 CCAAT-HAP3 Transcription Factor Family AT2G13570 67.2 5.5e-43 171.8
Cone19ag1279 . 7 125 CCAAT-HAP3 Transcription Factor Family AT2G13570 66.9 7.1e-43 171.4
Cone14ag1217 . 23 118 CCAAT-HAP3 Transcription Factor Family AT2G13570 82.3 3.5e-42 169.1
Cone8ag1366 . 18 119 CCAAT-HAP3 Transcription Factor Family AT2G13570 76.5 6.1e-42 168.3
Cone12ag1312 . 18 119 CCAAT-HAP3 Transcription Factor Family AT2G13570 76.5 6.1e-42 168.3
Cone15ag1238 . 23 118 CCAAT-HAP3 Transcription Factor Family AT2G13570 82.3 6.1e-42 168.3
Cone9ag1230 . 1 162 CCAAT-HAP3 Transcription Factor Family AT2G13570 59.1 8.7e-41 164.5
Cone13ag1293 . 7 119 CCAAT-HAP3 Transcription Factor Family AT2G13570 66.9 4.3e-40 162.2
Cone5ag0323 . 26 120 CCAAT-HAP3 Transcription Factor Family AT2G13570 76.8 5.7e-40 161.8
Cone17ag0499 . 55 149 CCAAT-HAP3 Transcription Factor Family AT2G13570 73.7 6.9e-38 154.8
Cone20ag0927 . 53 151 CCAAT-HAP3 Transcription Factor Family AT2G13570 72.7 6.9e-38 154.8
Cone1ag1336 . 26 124 CCAAT-HAP3 Transcription Factor Family AT2G13570 71.7 1.2e-37 154.1
Cone14ag0770 . 8 119 CCAAT-HAP3 Transcription Factor Family AT2G13570 64.3 2.0e-37 153.3
Cone14ag1217 . 1 137 CCAAT-HAP3 Transcription Factor Family AT5G47640 72.4 2.4e-50 196.1
Cone15ag1238 . 1 121 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.6 1.2e-49 193.7
Cone8ag1366 . 1 134 CCAAT-HAP3 Transcription Factor Family AT5G47640 69.0 1.0e-48 190.7
Cone12ag1312 . 1 134 CCAAT-HAP3 Transcription Factor Family AT5G47640 68.3 5.0e-48 188.3
Cone3ag0290 . 11 135 CCAAT-HAP3 Transcription Factor Family AT5G47640 69.8 1.2e-44 177.2
Cone10ag0264 . 11 129 CCAAT-HAP3 Transcription Factor Family AT5G47640 71.3 1.5e-44 176.8
Cone12ag0762 . 22 129 CCAAT-HAP3 Transcription Factor Family AT5G47640 79.6 1.5e-44 176.8
Cone19ag1279 . 25 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 82.7 3.4e-44 175.6
Cone8ag0794 . 22 129 CCAAT-HAP3 Transcription Factor Family AT5G47640 78.7 4.4e-44 175.3
Cone5ag0323 . 26 139 CCAAT-HAP3 Transcription Factor Family AT5G47640 72.3 9.8e-44 174.1
Cone13ag1293 . 19 125 CCAAT-HAP3 Transcription Factor Family AT5G47640 76.6 8.3e-43 171.0
Cone1ag1336 . 26 136 CCAAT-HAP3 Transcription Factor Family AT5G47640 71.8 5.4e-42 168.3
Cone17ag0499 . 55 149 CCAAT-HAP3 Transcription Factor Family AT5G47640 78.9 1.5e-39 160.2
Cone20ag0927 . 48 147 CCAAT-HAP3 Transcription Factor Family AT5G47640 76.0 1.9e-39 159.8
Cone5ag1798 . 37 158 CCAAT-HAP3 Transcription Factor Family AT5G47640 60.0 5.5e-39 158.3
Cone1ag0062 . 46 149 CCAAT-HAP3 Transcription Factor Family AT5G47640 68.3 1.4e-37 153.7
Cone3ag0290 . 12 161 CCAAT-HAP3 Transcription Factor Family AT3G53340 81.0 2.8e-61 232.3
Cone10ag0264 . 12 161 CCAAT-HAP3 Transcription Factor Family AT3G53340 81.0 3.7e-61 231.9
Cone19ag1279 . 12 173 CCAAT-HAP3 Transcription Factor Family AT3G53340 73.7 5.8e-59 224.6
Cone5ag0323 . 1 166 CCAAT-HAP3 Transcription Factor Family AT3G53340 66.7 3.9e-55 211.8
Cone13ag1293 . 12 130 CCAAT-HAP3 Transcription Factor Family AT3G53340 84.3 4.5e-51 198.4
Cone1ag1336 . 12 133 CCAAT-HAP3 Transcription Factor Family AT3G53340 75.2 4.6e-48 188.3
Cone8ag1366 . 6 124 CCAAT-HAP3 Transcription Factor Family AT3G53340 69.4 1.4e-44 176.8
Cone12ag1312 . 6 124 CCAAT-HAP3 Transcription Factor Family AT3G53340 69.4 1.4e-44 176.8
Cone14ag1217 . 6 117 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.1 2.6e-43 172.6
Cone15ag1238 . 6 117 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.1 3.4e-43 172.2
Cone12ag0762 . 7 119 CCAAT-HAP3 Transcription Factor Family AT3G53340 69.8 1.6e-40 163.3
Cone8ag0794 . 27 119 CCAAT-HAP3 Transcription Factor Family AT3G53340 79.6 1.4e-39 160.2
Cone20ag0927 . 38 151 CCAAT-HAP3 Transcription Factor Family AT3G53340 65.8 2.3e-39 159.5
Cone17ag0499 . 40 153 CCAAT-HAP3 Transcription Factor Family AT3G53340 64.0 2.0e-38 156.4
Cone5ag1798 . 45 148 CCAAT-HAP3 Transcription Factor Family AT3G53340 68.3 1.3e-37 153.7
Cone1ag0062 . 45 148 CCAAT-HAP3 Transcription Factor Family AT3G53340 67.3 8.2e-37 151.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0019385 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 4
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46876 PF01652 IF4E 3.20E-53 CL0625 Cone TF