Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone9ag1230 | ATGAAGAAGGTGATCCCAGTGAATGGTAAAATCTCGAAGGATGCCAAAGAGACCGTTCAAGAATGTGTCTCGGAATTCATCAGCTTTGTTACTGGTGAAGCTTCGGATAAATGCCAAAGAGAAAAAAGAAAGACCATTAATGGTGATGATATTATGGGGGCTATAACTACATTAGGGTTTGAAGATTACGTGCAACCGCTTAAGGTTTACCTCAGTAAGTATAAAGAGATTGAAGGGGAGAAGGTTCATATGCCAAAACAACTAAAATCTTCTTCGCAACAAGTAGGGCAAGTACAAGATGAACATCTTGAACAAGAACAAAAATTAGGGTTTTCAGATCATCATCTATATTCTCCGACGAATATTCTGTCTCATGCTGCTTCGTTCTTGCCTACGGATCATCATCACCAAGTGCCGTTTTTGTTGCCCGATTTCTCACCAAACGATACATTACAAAAGCAAATATTACCGCATCCACAAGATCATCAGGTTATGCAGTCATGGGGCGATGGTAGGGAGTTTAAAAAGATGAAAGGATTTACAATTAATTGA | 552 | 39.13 | MKKVIPVNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIMGAITTLGFEDYVQPLKVYLSKYKEIEGEKVHMPKQLKSSSQQVGQVQDEHLEQEQKLGFSDHHLYSPTNILSHAASFLPTDHHHQVPFLLPDFSPNDTLQKQILPHPQDHQVMQSWGDGREFKKMKGFTIN | 183 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 8978709 | 8979260 | + | Conep09aG0126400.1 | Cone9ag1230 | 445393 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone9ag1230 | 183 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 22 | 38 | IPR003956 | GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone9ag1230 | 183 | SUPERFAMILY | Histone-fold | 1 | 114 | IPR009072 | GO:0046982(InterPro) | |
Cone9ag1230 | 183 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 1 | 54 | IPR003958 | - | |
Cone9ag1230 | 183 | PRINTS | CCAAT-binding transcription factor subunit A signature | 38 | 56 | - | - | |
Cone9ag1230 | 183 | PRINTS | CCAAT-binding transcription factor subunit A signature | 57 | 75 | - | - | |
Cone9ag1230 | 183 | PRINTS | CCAAT-binding transcription factor subunit A signature | 19 | 37 | - | - | |
Cone9ag1230 | 183 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 1 | 101 | IPR027113 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER) | |
Cone9ag1230 | 183 | Gene3D | Histone, subunit A | 1 | 115 | IPR009072 | GO:0046982(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone9ag1230 | Cone-Chr9:8978709 | Cone8ag1366 | Cone-Chr8:10907603 | 6.88E-42 | transposed | |
Cone9ag1230 | Cone-Chr9:8978709 | Cone12ag1312 | Cone-Chr12:9924263 | 3.44E-42 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
46876 | PF01652 | IF4E | 3.20E-53 | CL0625 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone9ag1230 | K08065 | - | cit:102611608 | 201.06 |