Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1230 ATGAAGAAGGTGATCCCAGTGAATGGTAAAATCTCGAAGGATGCCAAAGAGACCGTTCAAGAATGTGTCTCGGAATTCATCAGCTTTGTTACTGGTGAAGCTTCGGATAAATGCCAAAGAGAAAAAAGAAAGACCATTAATGGTGATGATATTATGGGGGCTATAACTACATTAGGGTTTGAAGATTACGTGCAACCGCTTAAGGTTTACCTCAGTAAGTATAAAGAGATTGAAGGGGAGAAGGTTCATATGCCAAAACAACTAAAATCTTCTTCGCAACAAGTAGGGCAAGTACAAGATGAACATCTTGAACAAGAACAAAAATTAGGGTTTTCAGATCATCATCTATATTCTCCGACGAATATTCTGTCTCATGCTGCTTCGTTCTTGCCTACGGATCATCATCACCAAGTGCCGTTTTTGTTGCCCGATTTCTCACCAAACGATACATTACAAAAGCAAATATTACCGCATCCACAAGATCATCAGGTTATGCAGTCATGGGGCGATGGTAGGGAGTTTAAAAAGATGAAAGGATTTACAATTAATTGA 552 39.13 MKKVIPVNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIMGAITTLGFEDYVQPLKVYLSKYKEIEGEKVHMPKQLKSSSQQVGQVQDEHLEQEQKLGFSDHHLYSPTNILSHAASFLPTDHHHQVPFLLPDFSPNDTLQKQILPHPQDHQVMQSWGDGREFKKMKGFTIN 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8978709 8979260 + Conep09aG0126400.1 Cone9ag1230 445393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1230 183 ProSitePatterns NF-YB/HAP3 subunit signature. 22 38 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone9ag1230 183 SUPERFAMILY Histone-fold 1 114 IPR009072 GO:0046982(InterPro)
Cone9ag1230 183 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 1 54 IPR003958 -
Cone9ag1230 183 PRINTS CCAAT-binding transcription factor subunit A signature 38 56 - -
Cone9ag1230 183 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Cone9ag1230 183 PRINTS CCAAT-binding transcription factor subunit A signature 19 37 - -
Cone9ag1230 183 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 101 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
Cone9ag1230 183 Gene3D Histone, subunit A 1 115 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone9ag1230 Cone-Chr9:8978709 Cone8ag1366 Cone-Chr8:10907603 6.88E-42 transposed
Cone9ag1230 Cone-Chr9:8978709 Cone12ag1312 Cone-Chr12:9924263 3.44E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46876 PF01652 IF4E 3.20E-53 CL0625 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1230 K08065 - cit:102611608 201.06