Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1239 ATGAGGTCAAGGAGTCCGGGTCCTGGATCGAGAGGGGGGCCCACAAGCCCGACATTGCCACTTCATCAACGGTTGTGTGGCTTTAGCTTAGATTCACCAGATGGAAAGAGTCAATGTCATAAGCTTCCTCTTCCTCCAGGTTCTCCTACTAGCCCTAATTCTCCCCTGATTAATGTAAAGTCGATCCCAGCTGGTGAAAACTTTCATACTCAGTCAAAATGGAAGAAAGGAAAGCTTTTAGGAAGGGGCACTTTCGGACATGTTTACCTTGGATTCAATAGTATAAGTGGGCAAATGTGTGCGATAAAAGAAATACAGGTTGTAAGTGATGATAACCCATCAAAAGAATGTCTTCGGCAACTGAACCAATTGAACCAGGAGATAAATTTGCTTAGTCAGCTTTCACATCCAAATATTGTTCAATACTATGGCAGTGAAATGGGTGATGAAGCACTCTCAGTCTATTTAGAATACATCTCAGGTGGCTCGATCCACAAATTAGTTCAAGAATATGGGCCTCTTAAGGAGCCTGTTATACAAAATTACACCCGAAAGATTGTTTCTGGGCTTGCCTATCTACATGGAAGAAATACAGTGCACAGGGACATCAAGGGGGCAAACATATTAGTCGATCCGAACGGGGAGATCAAGTTGGCGGATTTTGGCATGGCTAGACATATAACTAATTGTTCATCAATGCTTTCTTTCAAAGGAAGTCCTTACTGGATGGCACCTGAGGTTGTTATGAATGCAAATGGATACAGTCTTGCAGTAGATATATGGAGCTTGGGTTGCACGGTTCTCGAAATGGCAACTTCAAAACCGCCTTGGTGCAAATATGAAGGGGTAGCTGCTATATTCAAGATTGGAAACAGCAAAGAGATTCCCGAAATTCCGAATCATCTATCTAATGATGCAAAAAGTTTTGTGAAACTCTGCTTGCAGCGGAACGTGGAGGCCCGGCCCACCGCGTCACAACTGTTAGACCACCCTTTTCTGCGAGATCAATCGCCAAATAGAGTTGCTAATCTAAGTCCTCTTAATTTCTCAATGGATGCCTTTTTCCACTCGCTTGATGGAAGCCAAACTCCGCAAATGTTAGATCATCGCCCCAACAGAAAAAGTACAAGTACATGTGATAGAGAATGCTCGACAAGTCCGCTAGGCATGACTTCCCGAGCATTCATAAGCTCAAGAGAAAACATAAGAACAATCACGTCTCTGCATGTATCTCCATGTTCGAGCCCCTTAAGGAATCGCGGACCCACATACAACAACTGTTTTGTCTCTCATTCTTATACATTGACAGGGGAAAGTAGGTACAATTTAAATGACTTCTCATCGTATATGACGAGACCTAACATGGCGACATTCGATCTCGACCCTTGGATTGAGTCATCTGTATTAAAAGTCCAAACACCCAGTGGGTCCCCCAGAGGAAGACTCATTTGA 1452 43.53 MRSRSPGPGSRGGPTSPTLPLHQRLCGFSLDSPDGKSQCHKLPLPPGSPTSPNSPLINVKSIPAGENFHTQSKWKKGKLLGRGTFGHVYLGFNSISGQMCAIKEIQVVSDDNPSKECLRQLNQLNQEINLLSQLSHPNIVQYYGSEMGDEALSVYLEYISGGSIHKLVQEYGPLKEPVIQNYTRKIVSGLAYLHGRNTVHRDIKGANILVDPNGEIKLADFGMARHITNCSSMLSFKGSPYWMAPEVVMNANGYSLAVDIWSLGCTVLEMATSKPPWCKYEGVAAIFKIGNSKEIPEIPNHLSNDAKSFVKLCLQRNVEARPTASQLLDHPFLRDQSPNRVANLSPLNFSMDAFFHSLDGSQTPQMLDHRPNRKSTSTCDRECSTSPLGMTSRAFISSRENIRTITSLHVSPCSSPLRNRGPTYNNCFVSHSYTLTGESRYNLNDFSSYMTRPNMATFDLDPWIESSVLKVQTPSGSPRGRLI 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9076150 9080626 - Conep09aG0127300.1 Cone9ag1239 445402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1239 483 Coils Coil 114 134 - -
Cone9ag1239 483 Pfam Protein kinase domain 75 333 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag1239 483 MobiDBLite consensus disorder prediction 1 54 - -
Cone9ag1239 483 CDD STKc_MEKK1_plant 73 333 - -
Cone9ag1239 483 ProSitePatterns Protein kinases ATP-binding region signature. 80 103 IPR017441 GO:0005524(InterPro)
Cone9ag1239 483 ProSiteProfiles Protein kinase domain profile. 74 333 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag1239 483 Gene3D Transferase(Phosphotransferase) domain 1 70 359 - -
Cone9ag1239 483 FunFam Mitogen-activated protein kinase kinase kinase 72 356 - -
Cone9ag1239 483 SUPERFAMILY Protein kinase-like (PK-like) 72 417 IPR011009 -
Cone9ag1239 483 SMART serkin_6 74 333 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag1239 483 MobiDBLite consensus disorder prediction 362 383 - -
Cone9ag1239 483 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 55 338 IPR050538 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag0976 Cone-Chr8:9169745 Cone9ag1239 Cone-Chr9:9076150 4.03E-75 dispersed
Cone9ag0187 Cone-Chr9:814399 Cone9ag1239 Cone-Chr9:9076150 4.12E-51 dispersed
Cone9ag1239 Cone-Chr9:9076150 Cone9ag1329 Cone-Chr9:9976718 6.36E-41 dispersed
Cone12ag0023 Cone-Chr12:182913 Cone9ag1239 Cone-Chr9:9076150 8.27E-235 wgd
Cone20ag0386 Cone-Chr20:1812146 Cone9ag1239 Cone-Chr9:9076150 2.93E-27 wgd
Cone6ag1281 Cone-Chr6:10240385 Cone9ag1239 Cone-Chr9:9076150 1.24E-254 wgd
Cone6ag1401 Cone-Chr6:11268172 Cone9ag1239 Cone-Chr9:9076150 9.51E-44 wgd
Cone8ag0019 Cone-Chr8:140232 Cone9ag1239 Cone-Chr9:9076150 1.72E-232 wgd
Cone8ag0112 Cone-Chr8:570627 Cone9ag1239 Cone-Chr9:9076150 8.78E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83205 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1239 K04421 - cit:102607672 640.188