Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1248 ATGGTGAGGGACGATTTGTGTATTACTGTTCCGAGCTTTTTCAAGTGTCCGATCTCGCTGGACGTGATGAAATCACCTGTAAGCCTGTGTACGGGAGTGACCTACGATCGTTCCAGCATCCAACGGTGGCTAGACAACGGTAACAACACTTGTCCTGCGACGATGCAGATGCTTCAGAGCAAGGAGATTGTTCCTAACCGCAATCTACAGCGGCTCATCCAGATCTGGTTGGAATCAGTCCGCCACCGTGTCGACTCGGATGAATCGCTACACTCACGTTCCGTCCCCTCCGAGGATCAGGTATCGGATTTCATCAAGCAAATGGAGAGTAATATGAGCCGGAGTAACTGCTTCGATTGCCTAATGAAGCTCGTCTGCTTCGCCGGAGAATCAGAGGAGAACCGGAAGTTTCTCGCGAAGTTCGACGGATTCGTGCAAATCCTCGTCGATCTTCTCTGCAATGTAGATGACGAAGATTCCGGAAACCTTGACTTGATTGAACTAACCGTCCGTCTTCTAGATTTTATCCGCGACAAAATTGAAGATAAAGAACAATTGATGTACTCGACGTTGAAGAGCGATCGGAATTGCTTGAACTCACTTCTTCTCGTGCTTCGACAAGGTAAACTAGAATCTCAAATCGGATCGGCTCGTATTTTGGAATCCATTGCCATAGACGCAGAATCAAAGCTCGCAATTGCCGAAAAAGACGGACTCCTGACCGAATTGATAAAAACAATTACTCCAGACAAGGATCCAAGCCTAATCGAATCGGTATTATCATGCCTAATTTCAGTTTCCATGACGAAACGCGTAAAAGCCAAACTAATCCATCTTGGAGCGATCAAATCGTTGACGAAGCTCCTCTCGGAGCCGAATTGGAACCCAAGCGTTACGATGACCGAGAAGATTCTGAAACTTCTGGAAACGACGTCGTCAGTTAAGGAAGGGCGTTCGGAGATATGCCAAGAGTCGACGTGTTTAGCGGCGATTGTACAGAAGATGTTAAAAGTGTCGAATTCTGCGACGGAACATGCAGTGATGATCTTGTGGAGCGTTTGCTATCTGTTTAGAGATGAGAGGGCTCAAGAGATCGTGACTAAGGCCAATGGATTGACGAAGATTTTGCTCCTGATGCAGAGCAATTGCTCACCTTCGATCAGACATATGGCGACGGATTTGCTCAAAATCTTTCGGGTTCATTCCAAATCTTGTCTCTCTAGTTATGATACTAAGACTGCTCACATAATGCCTTGGTAG 1260 46.51 MVRDDLCITVPSFFKCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQMLQSKEIVPNRNLQRLIQIWLESVRHRVDSDESLHSRSVPSEDQVSDFIKQMESNMSRSNCFDCLMKLVCFAGESEENRKFLAKFDGFVQILVDLLCNVDDEDSGNLDLIELTVRLLDFIRDKIEDKEQLMYSTLKSDRNCLNSLLLVLRQGKLESQIGSARILESIAIDAESKLAIAEKDGLLTELIKTITPDKDPSLIESVLSCLISVSMTKRVKAKLIHLGAIKSLTKLLSEPNWNPSVTMTEKILKLLETTSSVKEGRSEICQESTCLAAIVQKMLKVSNSATEHAVMILWSVCYLFRDERAQEIVTKANGLTKILLLMQSNCSPSIRHMATDLLKIFRVHSKSCLSSYDTKTAHIMPW 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9156608 9158142 - Conep09aG0128200.1 Cone9ag1248 445411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1248 419 CDD RING-Ubox_PUB 11 62 IPR045210 -
Cone9ag1248 419 SUPERFAMILY RING/U-box 6 81 - -
Cone9ag1248 419 Gene3D - 90 296 IPR011989 -
Cone9ag1248 419 Pfam U-box domain 10 79 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone9ag1248 419 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Cone9ag1248 419 SUPERFAMILY ARM repeat 195 403 IPR016024 -
Cone9ag1248 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 89 IPR013083 -
Cone9ag1248 419 SMART Ubox_2 13 76 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone9ag1248 419 Gene3D - 297 398 IPR011989 -
Cone9ag1248 419 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone9ag1248 419 PANTHER WDSAM1 PROTEIN 7 408 IPR045185 GO:0061630(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag1127 Cone-Chr8:9943296 Cone9ag1248 Cone-Chr9:9156608 7.94E-32 dispersed
Cone9ag1248 Cone-Chr9:9156608 Cone11ag1246 Cone-Chr11:9316383 1.16E-15 dispersed
Cone12ag0032 Cone-Chr12:228996 Cone9ag1248 Cone-Chr9:9156608 3.19E-178 wgd
Cone5ag0357 Cone-Chr5:1515471 Cone9ag1248 Cone-Chr9:9156608 1.23E-17 wgd
Cone6ag1295 Cone-Chr6:10383394 Cone9ag1248 Cone-Chr9:9156608 1.24E-278 wgd
Cone8ag0034 Cone-Chr8:211847 Cone9ag1248 Cone-Chr9:9156608 9.81E-178 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1248 - - - 0.0