Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone9ag1250 | ATGGCAGATGGTGAGGATATCCAGCCCCTTGTTTGTGACAATGGAACTGGAATGGTGAAGGCTGGATTTGCTGGGGATGATGCTCCTAGGGCAGTTTTTCCCAGTATCGTAGGTAGACCCAGACACACTGGTGTCATGGTTGGGATGGGCCAGAAAGATGCTTATGTCGGCGATGAAGCCCAATCCAAAAGGGGTATCCTTACCTTGAAATATCCTATTGAGCATGGCATAGTCAGCAACTGGGATGACATGGAAAAGATCTGGCATCACACGTTCTACAATGAGCTTCGTGTTGCCCCTGAAGAACACCCAGTTCTTCTGACTGAGGCTCCACTCAACCCCAAGGCTAACAGAGAAAAGATGACCCAGATCATGTTTGAAACATTTAACGTGCCTGCCATGTACGTTGCAATCCAGGCCGTTCTATCTCTCTATGCCAGTGGTCGTACAACTGGTATTGTGCTCGATTCTGGTGATGGTGTCAGTCACACTGTGCCCATTTACGAGGGATATGCTCTTCCTCATGCTATCCTCCGTTTGGATCTTGCTGGACGTGATCTAACTGATGCTTTGATGAAGATTCTTACTGAAAGAGGTTACATGTTCACCACCACTGCAGAACGGGAAATTGTCCGTGACATGAAGGAAAAACTTGCGTATGTTGCTCTTGACTATGAGCAAGAACTTGAAACCGCAAAGAGCAGCTCCTCAGTTGAAAAGAACTATGAGTTGCCCGATGGACAAGTCATTACAATTGGAGCCGAGAGATTCCGTTGCCCAGAGGTCCTTTTCCAGCCATCTCTAATCGGAATGGAAGCTGCTGGAATCCACGAGACTACCTACAACTCCATTATGAAGTGTGATGTAGATATCAGAAAGGATCTGTACGGAAACATTGTTCTTAGTGGTGGTTCTACCATGTTCCCCGGCATTGCTGACAGGATGAGCAAGGAGATCACTGCCCTTGCGCCTAGCAGCATGAAGATTAAGGTTGTGGCTCCACCAGAAAGGAAATACAGTGTCTGGATTGGAGGGTCTATCCTTGCATCCCTCAGCACCTTCCAGCAGATGTGGATCTCAAAGGGCGAGTATGATGAGTCAGGTCCGTCCATTGTCCACAGGAAGTGCTTCTAA | 1134 | 47.8 | MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF | 377 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 9202192 | 9205031 | + | Conep09aG0128400.1 | Cone9ag1250 | 445413 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone9ag1250 | 377 | Pfam | Actin | 5 | 377 | IPR004000 | - | |
| Cone9ag1250 | 377 | Gene3D | Actin; Chain A, domain 4 | 182 | 273 | - | - | |
| Cone9ag1250 | 377 | Gene3D | - | 10 | 371 | - | - | |
| Cone9ag1250 | 377 | SMART | actin_3 | 7 | 377 | IPR004000 | - | |
| Cone9ag1250 | 377 | ProSitePatterns | Actins and actin-related proteins signature. | 106 | 118 | IPR020902 | - | |
| Cone9ag1250 | 377 | Gene3D | - | 140 | 340 | - | - | |
| Cone9ag1250 | 377 | CDD | NBD_sugar-kinase_HSP70_actin | 10 | 183 | - | - | |
| Cone9ag1250 | 377 | PANTHER | ACTIN | 8 | 369 | IPR004000 | - | |
| Cone9ag1250 | 377 | FunFam | Major actin | 261 | 340 | - | - | |
| Cone9ag1250 | 377 | FunFam | Actin, alpha skeletal muscle | 3 | 179 | - | - | |
| Cone9ag1250 | 377 | ProSitePatterns | Actins signature 1. | 55 | 65 | IPR004001 | - | |
| Cone9ag1250 | 377 | FunFam | Putative actin-related protein 5 | 341 | 369 | - | - | |
| Cone9ag1250 | 377 | FunFam | Actin, muscle | 182 | 273 | - | - | |
| Cone9ag1250 | 377 | SUPERFAMILY | Actin-like ATPase domain | 6 | 155 | IPR043129 | - | |
| Cone9ag1250 | 377 | SUPERFAMILY | Actin-like ATPase domain | 149 | 377 | IPR043129 | - | |
| Cone9ag1250 | 377 | FunFam | Actin, alpha skeletal muscle | 36 | 73 | - | - | |
| Cone9ag1250 | 377 | PRINTS | Actin signature | 238 | 254 | IPR004000 | - | |
| Cone9ag1250 | 377 | PRINTS | Actin signature | 51 | 62 | IPR004000 | - | |
| Cone9ag1250 | 377 | PRINTS | Actin signature | 63 | 85 | IPR004000 | - | |
| Cone9ag1250 | 377 | PRINTS | Actin signature | 142 | 161 | IPR004000 | - | |
| Cone9ag1250 | 377 | PRINTS | Actin signature | 28 | 37 | IPR004000 | - | |
| Cone9ag1250 | 377 | PRINTS | Actin signature | 117 | 130 | IPR004000 | - | |
| Cone9ag1250 | 377 | ProSitePatterns | Actins signature 2. | 358 | 366 | IPR004001 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone15ag1295 | Cone-Chr15:10138307 | Cone9ag1250 | Cone-Chr9:9202192 | 8.58E-32 | dispersed | |
| Cone17ag0348 | Cone-Chr17:1634388 | Cone9ag1250 | Cone-Chr9:9202192 | 9.16E-67 | dispersed | |
| Cone20ag1066 | Cone-Chr20:7435738 | Cone9ag1250 | Cone-Chr9:9202192 | 1.17E-67 | dispersed | |
| Cone5ag0269 | Cone-Chr5:1138546 | Cone9ag1250 | Cone-Chr9:9202192 | 1.33E-270 | dispersed | |
| Cone5ag1152 | Cone-Chr5:5192143 | Cone9ag1250 | Cone-Chr9:9202192 | 7.24E-171 | dispersed | |
| Cone6ag1317 | Cone-Chr6:10591365 | Cone9ag1250 | Cone-Chr9:9202192 | 3.86E-231 | dispersed | |
| Cone8ag0044 | Cone-Chr8:248787 | Cone9ag1250 | Cone-Chr9:9202192 | 7.46E-277 | dispersed | |
| Cone8ag0048 | Cone-Chr8:258605 | Cone9ag1250 | Cone-Chr9:9202192 | 7.46E-277 | dispersed | |
| Cone8ag0709 | Cone-Chr8:7113469 | Cone9ag1250 | Cone-Chr9:9202192 | 2.00E-65 | dispersed | |
| Cone9ag1250 | Cone-Chr9:9202192 | Cone9ag1264 | Cone-Chr9:9364250 | 9.93E-234 | dispersed | |
| Cone18ag1443 | Cone-Chr18:9708772 | Cone9ag1250 | Cone-Chr9:9202192 | 1.13E-118 | transposed | |
| Cone10ag0079 | Cone-Chr10:448303 | Cone9ag1250 | Cone-Chr9:9202192 | 2.17E-66 | transposed | |
| Cone12ag0933 | Cone-Chr12:8147612 | Cone9ag1250 | Cone-Chr9:9202192 | 3.37E-34 | transposed | |
| Cone12ag0043 | Cone-Chr12:262455 | Cone9ag1250 | Cone-Chr9:9202192 | 1.57E-278 | wgd | |
| Cone3ag0336 | Cone-Chr3:1708645 | Cone9ag1250 | Cone-Chr9:9202192 | 1.61E-271 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone9ag1250 | K10355 | - | mdm:139196475 | 757.673 |