Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1255 ATGGATACTCAAGGTAGACTCGTTGCTGGTTCTCACAATCGGAACGAGTTTGTTCTCATAAATGCAGATGAAAATGGCCGGATCAAATCAGTGAAGGAATTGAGTGGCCAAATATGTCAGATTTGTGGGGATGAGATAGAGATAGCAGTAGAAGGGGAGCTCTTTGTTGCTTGCAATGAATGTGCTTTTCCTGTTTGTAGACCTTGTTATGAGTATGAGAGAAGAGAAGGCAATCAAGCTTGTCCTCAGTGTAAAACCAGATACAAGCGCCTCAAAGGTAGTCCTAGAGTTGAAGGTGATGAAGAAGAGGATGATATTGATGATTTGGACAACGAGTTTGACTATGGCTATGCTGATGACATGGATGGCATGGGATCTCATCAAGCTGCTGAGGCAATGCTCTTGGCTCGCCTCAATACCGGCCGTGGGTCCCACATGAATGGCTCTGGAATCCCAATGTACTCAAGCCATCAGTCCGCTGCTCCTCTTGGTTCTGAGATCCCTCTTCTTACTTATGGCGAGGAGGAGTCAGAGATTTCGTTCGATAAACATGCTCTCATCATGCCTCCAGTTATGGGCCATGGAAACAGAGTCCATCCTATGCCTTTTCCCGATCCATCAGTTCCCCTGCAACCAAGAGCAATGGTTCCTAAGAAAGATATAGCCGTGTATGGGTACGGAAGTGTGGCATGGAAGGATCGAATGGAAGACTGGAAGAAGCGGCAGAATGACAAGCTTCAAGTGGTAAAGCACCAAGGAGGAAATAATGGTGAAAACTTTGATGGGGATGGAGATGATCCCAATTTGCCAGTGATGGATGAAGGGCGGCAACCACTTTCACGGAAACTACCAGTCCCTTCAAGCAAGATAAATCCATATAGATTGATCATTATTCTTCGGCTTGTTATTTTGGGTGTCTTCTTCCATTATAGAATTTGTCATCCGGTTAAGGATGCCTATGGTTTGTGGTTAACTTCTGTGATATGTGAGATATGGTTTGGCGTATCCTGGATTCTGGATCAGTTCCCTAAATGGTACCCAATTCGACGAGAAACATATCTTGATCGGCTTTCATTAAGGTATGAAAAAGAAGGGAAGCCTTCTGGCTTAGCCAATGTAGACATCTTTGTAAGTACGGTTGATCCGTTAAAAGAACCTCCATTGATCACGGCAAACACGGTTCTTTCAATCCTGGCCGTTGATTATCCAGTCGATAAAGTCTCTTGCTATGTCTCCGATGATGGTGCAGCGATGTTAACATTTGAAGCACTTTCCGAGACATCTGAATTTGCTAGGAAATGGACCCCTTTTTGTAAAAAATATAATATCGAACCGCGGGCCCCGGAATGGTACTTCTGTCAGAAAATCGACTATTTGAAGAACAAAGTTCACCCGGCCTTTGTCAGGGAAAGACGAGCAATGAAGAGAGAATATGAAGAGTTTAAAGTGAGGATAAATGGGTTGGTATCCATGGCGCAGAAGGTTCCAGAAGATGGCTGGACAATGCAAGATGGGACCCCGTGGCCCGGAAACGATGTGCGGGACCACCCTGGCATGATTCAGGTCTTCCTTGGCCAAAGTGGTGTTAGAGATGTAGAAGGTAATGAGCTACCTCGTCTTGTTTATGTTTCTCGTGAAAAGCGGCCCGGATTTGAACATCACAAGAAAGCTGGTGCCATGAATGCTCTGGTGCGAGTTTCAGCTATTCTCTCAAACGCTCCTTATCTTTTGAACGTGGACTGTGATCACTATATTAACAACAGCAAGGCTCTACGAGAGGCCATGTGTTTCATGATGGACCCCACATCAGGGAAGAAAGTTTGCTACGTGCAATTCCCTCAAAGATTTGATGGGATCGATTGGCACGATAGATACTCAAACCGGAATGTTGTATTCTTCGATATCAATATGAAAGGATTGGATGGAATACAAGGACCGATATATGTTGGAACAGGTTGTGTCTTTAGAAGGCAAGCACTATATGGGTTTGATGCACCGGTTAAGAAGAAGCCACCCACTAAAACATGTAACTGTTTTCCGAAATGGTGCTGTCTTTGCTGTGGTTTGAGAAAGGCCAAGAAAGGAAAAGCAAATAATGAAAAGAAGAAGAAAGCGAAGAACAGGGAAGCATCAAAACAAATTCATGCACTTGAGAATATGGGAGATGAACTGCACTCACAGAAATCAGCAAATATGTCCCAACAAATAAAACTAGAGAAAAAGTTCGGGCAATCTCCTGTATTTGTTTTCTCCACGTTACTTGAAGATGGTGGGGTCCCACAAGAAGTGAGTGCAGCCTCACTCCTTAGAGAGGCCATCCAGGTCATTAGTTGTGGCTATGAGGATAAAACGGAATGGGGAAAAGAGGTTGGCTGGATTTACGGATCGGTGACTGAAGATATCTTGACTGGGTTTAAGATGCACTGTCATGGATGGAGATCGGTTTATTGTATACCAAAGAGGCCGGCATTTAAAGGGTCCGCTCCTATCAATCTTTCGGATCGGTTACACCAGGTGTTAAGGTGGGCCCTTGGATCAGTTGAGATATTCTTGAGTAGACATTGTCCCATATGGTATGGTTATGGAGGTGGACTGAACTGGTTGGAACGGTTTTCGTATATAAACTCAGTTGTTTATCCATGGACCTCTATTCCTTTGGTCGTTTATTGCAGCTTACCTGCTATTTGTCTTCTTACTGGGAAATTTATTGTCCCTGAGATAAGCAACTATGCCAGTCTAGTGTTCATCGCCCTCTTCATATCCATAGCAGCAACAGGTATTCTCGAGATGCAATGGGGTGGGGTCGGGATTGATGATTGGTGGAGAAATGAGCAGTTTTGGGTAATAGGAGGTGTCTCTTCTCATCTATTTGCTCTAATCCAAGGTCTGCTCAAAGTATTGGGTGGAGTAAGCACAAATTTTACTGTCACTTCAAAAGCAGCAGATGATGGAGAATTTTCCGAGCTCTATATCTTCAAGTGGACTTCATTGTTAATACCTCCCACCACTCTACTGATCATAAATATCGTGGGGGTAGTCGTGGGCATCTCGGATGCTATCAATAACGGGTACGATTCATGGGGCCCGCTCTTCGGGAGGCTGTTTTTCTCCTTGTGGGTCATTCTCCATCTATATCCTTTCCTCAAGGGGCTGCTTGGTAAACAAGATAGGTTACCAACCATTATTATCGTTTGGTCGATTCTCTTAGCCTCGATCTTGACTCTTTTGTGGGTTAGGATCAACCCGTTCGTTTCGAGAGATGGGCCGGTTTTGGAAGTTTGTGGGTTGAATTGTGAAGATTAG 3303 44.35 MDTQGRLVAGSHNRNEFVLINADENGRIKSVKELSGQICQICGDEIEIAVEGELFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSPRVEGDEEEDDIDDLDNEFDYGYADDMDGMGSHQAAEAMLLARLNTGRGSHMNGSGIPMYSSHQSAAPLGSEIPLLTYGEEESEISFDKHALIMPPVMGHGNRVHPMPFPDPSVPLQPRAMVPKKDIAVYGYGSVAWKDRMEDWKKRQNDKLQVVKHQGGNNGENFDGDGDDPNLPVMDEGRQPLSRKLPVPSSKINPYRLIIILRLVILGVFFHYRICHPVKDAYGLWLTSVICEIWFGVSWILDQFPKWYPIRRETYLDRLSLRYEKEGKPSGLANVDIFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWTPFCKKYNIEPRAPEWYFCQKIDYLKNKVHPAFVRERRAMKREYEEFKVRINGLVSMAQKVPEDGWTMQDGTPWPGNDVRDHPGMIQVFLGQSGVRDVEGNELPRLVYVSREKRPGFEHHKKAGAMNALVRVSAILSNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKVCYVQFPQRFDGIDWHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGFDAPVKKKPPTKTCNCFPKWCCLCCGLRKAKKGKANNEKKKKAKNREASKQIHALENMGDELHSQKSANMSQQIKLEKKFGQSPVFVFSTLLEDGGVPQEVSAASLLREAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLNWLERFSYINSVVYPWTSIPLVVYCSLPAICLLTGKFIVPEISNYASLVFIALFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGVSSHLFALIQGLLKVLGGVSTNFTVTSKAADDGEFSELYIFKWTSLLIPPTTLLIINIVGVVVGISDAINNGYDSWGPLFGRLFFSLWVILHLYPFLKGLLGKQDRLPTIIIVWSILLASILTLLWVRINPFVSRDGPVLEVCGLNCED 1100
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9240088 9246460 + Conep09aG0129000.1 Cone9ag1255 445418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1255 1100 Pfam Zinc-binding RING-finger 29 105 IPR027934 -
Cone9ag1255 1100 CDD mRING-HC-C4C4_CesA 37 87 - -
Cone9ag1255 1100 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 112 IPR013083 -
Cone9ag1255 1100 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 293 1068 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Cone9ag1255 1100 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Cone9ag1255 1100 Coils Coil 700 720 - -
Cone9ag1255 1100 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 524 665 IPR029044 -
Cone9ag1255 1100 FunFam Cellulose synthase 21 112 - -
Cone9ag1255 1100 SUPERFAMILY Nucleotide-diphospho-sugar transferases 387 918 IPR029044 -
Cone9ag1255 1100 FunFam Cellulose synthase 490 664 - -
Cone9ag1255 1100 Pfam Cellulose synthase 373 1087 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Cone9ag1255 1100 SUPERFAMILY RING/U-box 24 111 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0802 Cone-Chr11:6510662 Cone9ag1255 Cone-Chr9:9240088 1.24E-29 dispersed
Cone4ag1486 Cone-Chr4:11633123 Cone9ag1255 Cone-Chr9:9240088 0 dispersed
Cone7ag1458 Cone-Chr7:10292094 Cone9ag1255 Cone-Chr9:9240088 0 dispersed
Cone7ag1708 Cone-Chr7:11366195 Cone9ag1255 Cone-Chr9:9240088 0 dispersed
Cone8ag1006 Cone-Chr8:9388833 Cone9ag1255 Cone-Chr9:9240088 2.74E-289 dispersed
Cone9ag0873 Cone-Chr9:4242036 Cone9ag1255 Cone-Chr9:9240088 5.63E-61 dispersed
Cone9ag0874 Cone-Chr9:4246718 Cone9ag1255 Cone-Chr9:9240088 1.44E-107 dispersed
Cone14ag0847 Cone-Chr14:5369830 Cone9ag1255 Cone-Chr9:9240088 0 transposed
Cone6ag1303 Cone-Chr6:10472077 Cone9ag1255 Cone-Chr9:9240088 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1255 K10999 - rcu:8273696 1975.67