Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag1263 ATGAAGCCCCACCTGAAAACCTTCTCAAACTTCTCTCTCATCCTCCACTTTCTCTCTCTTGCTCTGTTCTTCTTCCATGCTTCCCCCTCACCTTCCCCATCTTCTACTTCCCATGATACACAGAAGCTACTTACCTTCCTAAACTCTCTTCCCAACCCTAACCTCCTCAAAACATGGATGCCCAACCAAAACCCATGCTCATTTGCCGGCATTTCCTGTAAAGAAAACAGAGTATCCGCCATAGACCTAACCTCCATCTCCTTAAGCTCAAACTTCAACCTCATCACTTCCACTCTCTTAACCCTTGAAAAACTCGAAACTCTCTCTCTAAAATCCACTAACCTCACCGGCTCCATCTCACTCTCTGGATCCAAGTGCAGCTCCCTCTTAACCGCCATAGATCTCTCTCTAAACTCTCTCTCCGGTCCTCTCTCCGACCTCTCCAACTTCGCTTCCTGTTCGGGCCTAAAATATCTAAACCTCTCCTCAAACTTCCTCGATTTCTCGGTCAAGGACTCTTCTACTGGATTGAAGCTGAACTTACAGGTCCTAGATCTTTCTTACAACAGGATTGTGGGAACGAATGTCGTCCCTTGGGTCTTATCCAACGGCTGCAATGAAATTCAATATTTGTCGCTAAAGGGTAACAAAGTCGCTGGCGAAATGGTGAACTTCTCCGCATGCGTTAATCTCGAGTTTCTCGACCTTTCCGGAAACAACTTCTCCCTACGCAGCTTCCCTTCTTTCGGCGACTGTTCGAGTTTAAACTCTCTCGATATCTCCGCTAATAAATTTTCCGGTGATATCTCACGTTCCGTTGCTAATTGTCAGAAGCTCACTTTTCTCAACCTCTCAAGCAACCAATTTTCCGGCCAAATCCCATCTTCTTTCCCGTCCAAAAGTTTGCAGAATCTCTATCTTGCGAATAATGATTTTCAGGGTGTTATTCCTTCAAGGCTTGCCGATTTATGTTCGAGTCTGATCGAGCTGGATCTTTCCTCGAACAATCTATCCGGTGGGGTTCCAGATTCTTTAAGCTCTTGCTCTCTGCTTCAATCTTTGGTCATTTCGGGAAATAATTTATCTGGCCAGTTGCCCGTTTCGGTTTTTACGAAAATGAGCAATTTGAAGACACTCTCTGCTTCTCACAACAAGTTTTCCGGTTACTTGCCTGATTCCTTTTCCCTGCTCGAGAATTTGAAGTATTTGGATCTGAGCTCGAATAATTTTTCTGGGTCGATTCCAGCTGAGCTTTGTCAGAACTCTAAGAAGAGAAATTTGAAAGAACTTTTTCTTCAGAACAATTTCTTCACAGGATCTATCCCGCCTTCTCTTAGCAACTGTTCCGAGCTTGTTTTCTTGGATTTGAGCTTCAATTTCTTGACCGGAACGATACCGTCAAGCTTAGGATCACTTACCAAGCTTAGAAATTTGATAATCTGGTTGAATCAAATCACGGGTGAAATCCCACAAGAGCTAATGTACATTCAATCGCTTGAGAATCTCATTCTGGATTTCAACGAGCTTACTGGACCGATACCTTCGGGCCTAAGCAACTGCACAAACTTGAACTGGATCTCATTATCTAACAATAGGCTGACCGGAGAGATACCAAGCTGGATTGGGCGTTTCTCAAGCCTTGCTATTCTCAAGCTGAGTAACAACTCCTTTTACGGCCAGGTCCCGCCTGAGTTAGGAGATTGTCGGAGCTTGATATGGTTGGATCTTAACACAAACTTTTTGAATGGATCAATCCCGCCTGAGCTATTCAAGCAATCCGGAAATATTGCGGTTAATTTCATTTCGGGAAAGACCTATGCTTATATTAAGAACGATGGGAGTGAAGCATGTCATGGAGCGGGAAATTTGCTTGAATTTTCCGGGATTAGGCAAGAGCAACTGGGTCGGATTTCGACGAGGAGCCCGTGCAATTTCACCCGGGTTTATCGAGGTATGACTCAGCCGACATTTAACCATAATGGCTCAATGATTTTTCTTGATATTTCTCACAATTTGTTGTCCGGGCCCATCCCGAAAGAGATTAGCTCTGCAAATTATCTCTACATCTTGAATTTGGACCATAACAACATTTCTGGAAAAATCCCAGAAGAGCTCGGCAATCTTCGGAACCTCAACATTCTTGATCTTTCAAGCAACCGGCTTGATGGGCCAATCCCGAATTCCTTGGCGAGCCTTTCTTTGCTAACTGAAATCAATCTTTCCAACAATCTTCTCAATGGGCCCATTCCTGAATTGGGGCAGTTCGAAACTTTCCCAGCAGCTGGGTTTTCTTACAATTCTGGGCTCTGTGGGTACCCGCTTCCAAAATGTGGGTCCGATTCAGGATCAGTCGTATCTCAGCACCAGAAGTCTCATAGGAGACAAGCTTCGCTTGCTGGTAGTGTAGCAATGGGGTTACTATTCTCCCTCTTTTGCATATTTGGTTTGATTATTGTCGCCATAGAGACAAAGAAGAGGCGGAAAAAGAAAGAATCGGCCTTAGAAGCTTATATCGAAAACCACTCCCATTCCGGCACCAACAATAACGGGAGCTGGAAGCTAACTAGTGCTCGAGAAGCACTAAGCATAAACCTAGCCACATTTGAAAAGCCGCTCCAGAAGCTCACCTTTGCAGACCTTCTAGAAGCTACAAATGGGTTCCATAACGACAGCCTGGTGGGGTCCGGTGGTTTCGGAGATGTTTACAAGGCCCAACTGAAAGACGGAAATGTTGTGGCAATAAAGAAACTCATTCACATAAGTGGTCAAGGGGATAGAGAATTTACGGCCGAAATGGAAACAATTGGAAAAATCAAGCACCGTAACCTAGTCCCTCTACTCGGGTATTGCAAAGTAGGTGAGGAACGGCTTTTAGTCTATGAGTACATGAAATTCGGAAGCTTAGAAGACGTATTACATGACCCAAAGAAAGCTGGGATAAAATTAAATTGGTCAGCCCGAAGAAAGATTGCTATAGGTGCGGCCAGAGGGTTAGCCTTCCTTCACCATAATTGCATTCCCCATATAATCCATCGCGATATGAAATCGAGCAATGTGTTGCTCGATGAGAATTTAGAAGCTAGGGTTTCAGATTTCGGAATGGCGAGGCTAATGAGTGCAATGGACACTCATTTGAGTGTAAGCACCTTAGCGGGTACTCCGGGGTATGTCCCACCGGAATATTACCAAAGTTTCCGATGTTCAACAAGAGGAGATGTTTATAGTTATGGGGTGGTTTTGCTTGAGCTTTTGACAGGGAGGCGGCCCACGGATTCGGCTGATTTCGGGGATAATAATCTAGTGGGATGGGTGAAGCAACATGCTAAGTTGAATATAAGTGATGTTTTTGATAAGGAGCTTATGAAGGAGGAGGATTCAACGCTTGAGATTGAGCTATTGCAGCATTTAGAGGTGGCTTGTGCTTGCTTGGATGATAGGCCGTGGAGGCGACCCACCATGATTCAAGTCATGGCAATGTTTAAGGGGATCCAAGCGGGGTCTGGGATTGATTCACAATCTACAATTGCTACAAGCGATGGAGGGTTTAGTACTCTGGAGGAAGTGGAGATGAGTGTTAAGGAAGTTCCGGAACCGGTTAAGCAATAG 3606 44.76 MKPHLKTFSNFSLILHFLSLALFFFHASPSPSPSSTSHDTQKLLTFLNSLPNPNLLKTWMPNQNPCSFAGISCKENRVSAIDLTSISLSSNFNLITSTLLTLEKLETLSLKSTNLTGSISLSGSKCSSLLTAIDLSLNSLSGPLSDLSNFASCSGLKYLNLSSNFLDFSVKDSSTGLKLNLQVLDLSYNRIVGTNVVPWVLSNGCNEIQYLSLKGNKVAGEMVNFSACVNLEFLDLSGNNFSLRSFPSFGDCSSLNSLDISANKFSGDISRSVANCQKLTFLNLSSNQFSGQIPSSFPSKSLQNLYLANNDFQGVIPSRLADLCSSLIELDLSSNNLSGGVPDSLSSCSLLQSLVISGNNLSGQLPVSVFTKMSNLKTLSASHNKFSGYLPDSFSLLENLKYLDLSSNNFSGSIPAELCQNSKKRNLKELFLQNNFFTGSIPPSLSNCSELVFLDLSFNFLTGTIPSSLGSLTKLRNLIIWLNQITGEIPQELMYIQSLENLILDFNELTGPIPSGLSNCTNLNWISLSNNRLTGEIPSWIGRFSSLAILKLSNNSFYGQVPPELGDCRSLIWLDLNTNFLNGSIPPELFKQSGNIAVNFISGKTYAYIKNDGSEACHGAGNLLEFSGIRQEQLGRISTRSPCNFTRVYRGMTQPTFNHNGSMIFLDISHNLLSGPIPKEISSANYLYILNLDHNNISGKIPEELGNLRNLNILDLSSNRLDGPIPNSLASLSLLTEINLSNNLLNGPIPELGQFETFPAAGFSYNSGLCGYPLPKCGSDSGSVVSQHQKSHRRQASLAGSVAMGLLFSLFCIFGLIIVAIETKKRRKKKESALEAYIENHSHSGTNNNGSWKLTSAREALSINLATFEKPLQKLTFADLLEATNGFHNDSLVGSGGFGDVYKAQLKDGNVVAIKKLIHISGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMKFGSLEDVLHDPKKAGIKLNWSARRKIAIGAARGLAFLHHNCIPHIIHRDMKSSNVLLDENLEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTRGDVYSYGVVLLELLTGRRPTDSADFGDNNLVGWVKQHAKLNISDVFDKELMKEEDSTLEIELLQHLEVACACLDDRPWRRPTMIQVMAMFKGIQAGSGIDSQSTIATSDGGFSTLEEVEMSVKEVPEPVKQ 1201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9346800 9350831 + Conep09aG0130100.1 Cone9ag1263 445426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag1263 1201 FunFam Brassinosteroid LRR receptor kinase 963 1165 - -
Cone9ag1263 1201 Pfam Leucine rich repeat N-terminal domain 38 73 IPR013210 -
Cone9ag1263 1201 Pfam Brassinosteroid receptor island domain 594 658 IPR045381 -
Cone9ag1263 1201 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1009 1021 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone9ag1263 1201 Gene3D Transferase(Phosphotransferase) domain 1 963 1165 - -
Cone9ag1263 1201 FunFam Serine/threonine-protein kinase BRI1-like 1 601 658 - -
Cone9ag1263 1201 Pfam Protein kinase domain 888 1158 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag1263 1201 Gene3D Phosphorylase Kinase; domain 1 847 962 - -
Cone9ag1263 1201 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 422 604 - -
Cone9ag1263 1201 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 370 1163 IPR050647 -
Cone9ag1263 1201 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 180 421 - -
Cone9ag1263 1201 Pfam Leucine rich repeat 301 361 IPR001611 GO:0005515(InterPro)
Cone9ag1263 1201 Pfam Leucine rich repeat 365 410 IPR001611 GO:0005515(InterPro)
Cone9ag1263 1201 Pfam Leucine rich repeat 498 556 IPR001611 GO:0005515(InterPro)
Cone9ag1263 1201 Pfam Leucine rich repeat 687 745 IPR001611 GO:0005515(InterPro)
Cone9ag1263 1201 ProSiteProfiles Leucine-rich repeat profile. 399 421 IPR001611 GO:0005515(InterPro)
Cone9ag1263 1201 ProSitePatterns Protein kinases ATP-binding region signature. 893 916 IPR017441 GO:0005524(InterPro)
Cone9ag1263 1201 SMART LRR_typ_2 496 520 IPR003591 -
Cone9ag1263 1201 SMART LRR_typ_2 373 396 IPR003591 -
Cone9ag1263 1201 SMART LRR_typ_2 708 732 IPR003591 -
Cone9ag1263 1201 SMART LRR_typ_2 397 421 IPR003591 -
Cone9ag1263 1201 SMART LRR_typ_2 324 348 IPR003591 -
Cone9ag1263 1201 SMART LRR_typ_2 544 568 IPR003591 -
Cone9ag1263 1201 PRINTS Leucine-rich repeat signature 400 413 - -
Cone9ag1263 1201 PRINTS Leucine-rich repeat signature 708 721 - -
Cone9ag1263 1201 SUPERFAMILY L domain-like 45 297 - -
Cone9ag1263 1201 CDD STKc_IRAK 893 1163 - -
Cone9ag1263 1201 SMART serkin_6 887 1160 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag1263 1201 SUPERFAMILY RNI-like 269 588 - -
Cone9ag1263 1201 SUPERFAMILY L domain-like 655 774 - -
Cone9ag1263 1201 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 655 777 - -
Cone9ag1263 1201 Pfam Leucine Rich Repeat 426 448 IPR001611 GO:0005515(InterPro)
Cone9ag1263 1201 Pfam Leucine Rich Repeat 180 196 IPR001611 GO:0005515(InterPro)
Cone9ag1263 1201 Pfam Leucine Rich Repeat 230 252 IPR001611 GO:0005515(InterPro)
Cone9ag1263 1201 Pfam Leucine Rich Repeat 451 472 IPR001611 GO:0005515(InterPro)
Cone9ag1263 1201 Pfam Leucine Rich Repeat 278 298 IPR001611 GO:0005515(InterPro)
Cone9ag1263 1201 Gene3D - 599 659 - -
Cone9ag1263 1201 Gene3D Ribonuclease Inhibitor 43 777 IPR032675 -
Cone9ag1263 1201 SUPERFAMILY Protein kinase-like (PK-like) 873 1165 IPR011009 -
Cone9ag1263 1201 ProSiteProfiles Protein kinase domain profile. 887 1163 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag1263 1201 FunFam serine/threonine-protein kinase BRI1-like 2 848 962 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone9ag0181 Cone-Chr9:798380 Cone9ag1263 Cone-Chr9:9346800 2.56E-74 dispersed
Cone9ag0368 Cone-Chr9:1634768 Cone9ag1263 Cone-Chr9:9346800 2.25E-160 dispersed
Cone9ag1263 Cone-Chr9:9346800 Cone15ag1009 Cone-Chr15:8168530 1.07E-73 dispersed
Cone6ag1315 Cone-Chr6:10561015 Cone9ag1263 Cone-Chr9:9346800 0 wgd
Cone8ag0040 Cone-Chr8:229688 Cone9ag1263 Cone-Chr9:9346800 5.60E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83207 PF00069 Pkinase 1.20E-74 CL0016 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag1263 K13415 - csv:101209118 1723.37